data_6YYD
#
_model_server_result.job_id            XvTDC89UzJln37SBJt_EVw 
_model_server_result.datetime_utc      '2024-11-14 07:05:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6YYD 
#
_exptl.entry_id    6YYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.82 
_cell.angle_gamma         90 
_cell.entry_id            6YYD 
_cell.length_a            47.708 
_cell.length_b            64.471 
_cell.length_c            48.372 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6YYD 
_atom_sites.fract_transf_matrix[1][1]    0.020961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00797 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Q0H A 1 301 1 Q0H LIG . 
C 3 SO4 A 1 302 1 SO4 SO4 . 
D 4 EDO A 1 303 1 EDO EDO . 
E 5 HOH A 1 401 288 HOH HOH . 
E 5 HOH A 2 402 239 HOH HOH . 
E 5 HOH A 3 403 293 HOH HOH . 
E 5 HOH A 4 404 50 HOH HOH . 
E 5 HOH A 5 405 224 HOH HOH . 
E 5 HOH A 6 406 79 HOH HOH . 
E 5 HOH A 7 407 186 HOH HOH . 
E 5 HOH A 8 408 94 HOH HOH . 
E 5 HOH A 9 409 86 HOH HOH . 
E 5 HOH A 10 410 68 HOH HOH . 
E 5 HOH A 11 411 122 HOH HOH . 
E 5 HOH A 12 412 246 HOH HOH . 
E 5 HOH A 13 413 139 HOH HOH . 
E 5 HOH A 14 414 27 HOH HOH . 
E 5 HOH A 15 415 88 HOH HOH . 
E 5 HOH A 16 416 156 HOH HOH . 
E 5 HOH A 17 417 208 HOH HOH . 
E 5 HOH A 18 418 97 HOH HOH . 
E 5 HOH A 19 419 145 HOH HOH . 
E 5 HOH A 20 420 128 HOH HOH . 
E 5 HOH A 21 421 93 HOH HOH . 
E 5 HOH A 22 422 167 HOH HOH . 
E 5 HOH A 23 423 102 HOH HOH . 
E 5 HOH A 24 424 159 HOH HOH . 
E 5 HOH A 25 425 173 HOH HOH . 
E 5 HOH A 26 426 40 HOH HOH . 
E 5 HOH A 27 427 67 HOH HOH . 
E 5 HOH A 28 428 172 HOH HOH . 
E 5 HOH A 29 429 166 HOH HOH . 
E 5 HOH A 30 430 195 HOH HOH . 
E 5 HOH A 31 431 83 HOH HOH . 
E 5 HOH A 32 432 205 HOH HOH . 
E 5 HOH A 33 433 247 HOH HOH . 
E 5 HOH A 34 434 287 HOH HOH . 
E 5 HOH A 35 435 207 HOH HOH . 
E 5 HOH A 36 436 158 HOH HOH . 
E 5 HOH A 37 437 133 HOH HOH . 
E 5 HOH A 38 438 17 HOH HOH . 
E 5 HOH A 39 439 13 HOH HOH . 
E 5 HOH A 40 440 206 HOH HOH . 
E 5 HOH A 41 441 6 HOH HOH . 
E 5 HOH A 42 442 182 HOH HOH . 
E 5 HOH A 43 443 241 HOH HOH . 
E 5 HOH A 44 444 146 HOH HOH . 
E 5 HOH A 45 445 12 HOH HOH . 
E 5 HOH A 46 446 25 HOH HOH . 
E 5 HOH A 47 447 283 HOH HOH . 
E 5 HOH A 48 448 20 HOH HOH . 
E 5 HOH A 49 449 49 HOH HOH . 
E 5 HOH A 50 450 229 HOH HOH . 
E 5 HOH A 51 451 110 HOH HOH . 
E 5 HOH A 52 452 72 HOH HOH . 
E 5 HOH A 53 453 36 HOH HOH . 
E 5 HOH A 54 454 57 HOH HOH . 
E 5 HOH A 55 455 23 HOH HOH . 
E 5 HOH A 56 456 85 HOH HOH . 
E 5 HOH A 57 457 1 HOH HOH . 
E 5 HOH A 58 458 185 HOH HOH . 
E 5 HOH A 59 459 39 HOH HOH . 
E 5 HOH A 60 460 26 HOH HOH . 
E 5 HOH A 61 461 154 HOH HOH . 
E 5 HOH A 62 462 51 HOH HOH . 
E 5 HOH A 63 463 47 HOH HOH . 
E 5 HOH A 64 464 37 HOH HOH . 
E 5 HOH A 65 465 74 HOH HOH . 
E 5 HOH A 66 466 104 HOH HOH . 
E 5 HOH A 67 467 144 HOH HOH . 
E 5 HOH A 68 468 127 HOH HOH . 
E 5 HOH A 69 469 191 HOH HOH . 
E 5 HOH A 70 470 155 HOH HOH . 
E 5 HOH A 71 471 279 HOH HOH . 
E 5 HOH A 72 472 10 HOH HOH . 
E 5 HOH A 73 473 11 HOH HOH . 
E 5 HOH A 74 474 210 HOH HOH . 
E 5 HOH A 75 475 30 HOH HOH . 
E 5 HOH A 76 476 2 HOH HOH . 
E 5 HOH A 77 477 91 HOH HOH . 
E 5 HOH A 78 478 64 HOH HOH . 
E 5 HOH A 79 479 16 HOH HOH . 
E 5 HOH A 80 480 134 HOH HOH . 
E 5 HOH A 81 481 290 HOH HOH . 
E 5 HOH A 82 482 164 HOH HOH . 
E 5 HOH A 83 483 112 HOH HOH . 
E 5 HOH A 84 484 45 HOH HOH . 
E 5 HOH A 85 485 143 HOH HOH . 
E 5 HOH A 86 486 204 HOH HOH . 
E 5 HOH A 87 487 38 HOH HOH . 
E 5 HOH A 88 488 84 HOH HOH . 
E 5 HOH A 89 489 5 HOH HOH . 
E 5 HOH A 90 490 234 HOH HOH . 
E 5 HOH A 91 491 77 HOH HOH . 
E 5 HOH A 92 492 21 HOH HOH . 
E 5 HOH A 93 493 119 HOH HOH . 
E 5 HOH A 94 494 237 HOH HOH . 
E 5 HOH A 95 495 22 HOH HOH . 
E 5 HOH A 96 496 92 HOH HOH . 
E 5 HOH A 97 497 136 HOH HOH . 
E 5 HOH A 98 498 7 HOH HOH . 
E 5 HOH A 99 499 218 HOH HOH . 
E 5 HOH A 100 500 230 HOH HOH . 
E 5 HOH A 101 501 257 HOH HOH . 
E 5 HOH A 102 502 35 HOH HOH . 
E 5 HOH A 103 503 60 HOH HOH . 
E 5 HOH A 104 504 130 HOH HOH . 
E 5 HOH A 105 505 118 HOH HOH . 
E 5 HOH A 106 506 275 HOH HOH . 
E 5 HOH A 107 507 99 HOH HOH . 
E 5 HOH A 108 508 80 HOH HOH . 
E 5 HOH A 109 509 151 HOH HOH . 
E 5 HOH A 110 510 176 HOH HOH . 
E 5 HOH A 111 511 189 HOH HOH . 
E 5 HOH A 112 512 78 HOH HOH . 
E 5 HOH A 113 513 214 HOH HOH . 
E 5 HOH A 114 514 52 HOH HOH . 
E 5 HOH A 115 515 54 HOH HOH . 
E 5 HOH A 116 516 31 HOH HOH . 
E 5 HOH A 117 517 175 HOH HOH . 
E 5 HOH A 118 518 265 HOH HOH . 
E 5 HOH A 119 519 95 HOH HOH . 
E 5 HOH A 120 520 216 HOH HOH . 
E 5 HOH A 121 521 109 HOH HOH . 
E 5 HOH A 122 522 169 HOH HOH . 
E 5 HOH A 123 523 282 HOH HOH . 
E 5 HOH A 124 524 4 HOH HOH . 
E 5 HOH A 125 525 28 HOH HOH . 
E 5 HOH A 126 526 48 HOH HOH . 
E 5 HOH A 127 527 14 HOH HOH . 
E 5 HOH A 128 528 90 HOH HOH . 
E 5 HOH A 129 529 184 HOH HOH . 
E 5 HOH A 130 530 76 HOH HOH . 
E 5 HOH A 131 531 89 HOH HOH . 
E 5 HOH A 132 532 62 HOH HOH . 
E 5 HOH A 133 533 3 HOH HOH . 
E 5 HOH A 134 534 44 HOH HOH . 
E 5 HOH A 135 535 273 HOH HOH . 
E 5 HOH A 136 536 212 HOH HOH . 
E 5 HOH A 137 537 19 HOH HOH . 
E 5 HOH A 138 538 58 HOH HOH . 
E 5 HOH A 139 539 294 HOH HOH . 
E 5 HOH A 140 540 81 HOH HOH . 
E 5 HOH A 141 541 190 HOH HOH . 
E 5 HOH A 142 542 138 HOH HOH . 
E 5 HOH A 143 543 258 HOH HOH . 
E 5 HOH A 144 544 243 HOH HOH . 
E 5 HOH A 145 545 9 HOH HOH . 
E 5 HOH A 146 546 168 HOH HOH . 
E 5 HOH A 147 547 59 HOH HOH . 
E 5 HOH A 148 548 75 HOH HOH . 
E 5 HOH A 149 549 124 HOH HOH . 
E 5 HOH A 150 550 291 HOH HOH . 
E 5 HOH A 151 551 161 HOH HOH . 
E 5 HOH A 152 552 114 HOH HOH . 
E 5 HOH A 153 553 271 HOH HOH . 
E 5 HOH A 154 554 222 HOH HOH . 
E 5 HOH A 155 555 177 HOH HOH . 
E 5 HOH A 156 556 24 HOH HOH . 
E 5 HOH A 157 557 259 HOH HOH . 
E 5 HOH A 158 558 107 HOH HOH . 
E 5 HOH A 159 559 70 HOH HOH . 
E 5 HOH A 160 560 132 HOH HOH . 
E 5 HOH A 161 561 157 HOH HOH . 
E 5 HOH A 162 562 255 HOH HOH . 
E 5 HOH A 163 563 42 HOH HOH . 
E 5 HOH A 164 564 285 HOH HOH . 
E 5 HOH A 165 565 142 HOH HOH . 
E 5 HOH A 166 566 148 HOH HOH . 
E 5 HOH A 167 567 240 HOH HOH . 
E 5 HOH A 168 568 33 HOH HOH . 
E 5 HOH A 169 569 53 HOH HOH . 
E 5 HOH A 170 570 108 HOH HOH . 
E 5 HOH A 171 571 260 HOH HOH . 
E 5 HOH A 172 572 56 HOH HOH . 
E 5 HOH A 173 573 29 HOH HOH . 
E 5 HOH A 174 574 135 HOH HOH . 
E 5 HOH A 175 575 196 HOH HOH . 
E 5 HOH A 176 576 105 HOH HOH . 
E 5 HOH A 177 577 248 HOH HOH . 
E 5 HOH A 178 578 245 HOH HOH . 
E 5 HOH A 179 579 131 HOH HOH . 
E 5 HOH A 180 580 149 HOH HOH . 
E 5 HOH A 181 581 152 HOH HOH . 
E 5 HOH A 182 582 8 HOH HOH . 
E 5 HOH A 183 583 101 HOH HOH . 
E 5 HOH A 184 584 150 HOH HOH . 
E 5 HOH A 185 585 263 HOH HOH . 
E 5 HOH A 186 586 100 HOH HOH . 
E 5 HOH A 187 587 73 HOH HOH . 
E 5 HOH A 188 588 274 HOH HOH . 
E 5 HOH A 189 589 34 HOH HOH . 
E 5 HOH A 190 590 277 HOH HOH . 
E 5 HOH A 191 591 228 HOH HOH . 
E 5 HOH A 192 592 63 HOH HOH . 
E 5 HOH A 193 593 244 HOH HOH . 
E 5 HOH A 194 594 116 HOH HOH . 
E 5 HOH A 195 595 272 HOH HOH . 
E 5 HOH A 196 596 197 HOH HOH . 
E 5 HOH A 197 597 174 HOH HOH . 
E 5 HOH A 198 598 111 HOH HOH . 
E 5 HOH A 199 599 46 HOH HOH . 
E 5 HOH A 200 600 125 HOH HOH . 
E 5 HOH A 201 601 269 HOH HOH . 
E 5 HOH A 202 602 71 HOH HOH . 
E 5 HOH A 203 603 200 HOH HOH . 
E 5 HOH A 204 604 18 HOH HOH . 
E 5 HOH A 205 605 82 HOH HOH . 
E 5 HOH A 206 606 65 HOH HOH . 
E 5 HOH A 207 607 297 HOH HOH . 
E 5 HOH A 208 608 120 HOH HOH . 
E 5 HOH A 209 609 121 HOH HOH . 
E 5 HOH A 210 610 103 HOH HOH . 
E 5 HOH A 211 611 286 HOH HOH . 
E 5 HOH A 212 612 61 HOH HOH . 
E 5 HOH A 213 613 296 HOH HOH . 
E 5 HOH A 214 614 41 HOH HOH . 
E 5 HOH A 215 615 43 HOH HOH . 
E 5 HOH A 216 616 223 HOH HOH . 
E 5 HOH A 217 617 193 HOH HOH . 
E 5 HOH A 218 618 178 HOH HOH . 
E 5 HOH A 219 619 187 HOH HOH . 
E 5 HOH A 220 620 96 HOH HOH . 
E 5 HOH A 221 621 209 HOH HOH . 
E 5 HOH A 222 622 289 HOH HOH . 
E 5 HOH A 223 623 235 HOH HOH . 
E 5 HOH A 224 624 201 HOH HOH . 
E 5 HOH A 225 625 188 HOH HOH . 
E 5 HOH A 226 626 295 HOH HOH . 
E 5 HOH A 227 627 250 HOH HOH . 
E 5 HOH A 228 628 292 HOH HOH . 
E 5 HOH A 229 629 153 HOH HOH . 
E 5 HOH A 230 630 69 HOH HOH . 
E 5 HOH A 231 631 126 HOH HOH . 
E 5 HOH A 232 632 249 HOH HOH . 
E 5 HOH A 233 633 215 HOH HOH . 
E 5 HOH A 234 634 66 HOH HOH . 
E 5 HOH A 235 635 15 HOH HOH . 
E 5 HOH A 236 636 226 HOH HOH . 
E 5 HOH A 237 637 211 HOH HOH . 
E 5 HOH A 238 638 137 HOH HOH . 
E 5 HOH A 239 639 160 HOH HOH . 
E 5 HOH A 240 640 180 HOH HOH . 
E 5 HOH A 241 641 147 HOH HOH . 
E 5 HOH A 242 642 280 HOH HOH . 
E 5 HOH A 243 643 231 HOH HOH . 
E 5 HOH A 244 644 170 HOH HOH . 
E 5 HOH A 245 645 198 HOH HOH . 
E 5 HOH A 246 646 113 HOH HOH . 
E 5 HOH A 247 647 266 HOH HOH . 
E 5 HOH A 248 648 242 HOH HOH . 
E 5 HOH A 249 649 252 HOH HOH . 
E 5 HOH A 250 650 183 HOH HOH . 
E 5 HOH A 251 651 98 HOH HOH . 
E 5 HOH A 252 652 141 HOH HOH . 
E 5 HOH A 253 653 225 HOH HOH . 
E 5 HOH A 254 654 55 HOH HOH . 
E 5 HOH A 255 655 106 HOH HOH . 
E 5 HOH A 256 656 213 HOH HOH . 
E 5 HOH A 257 657 284 HOH HOH . 
E 5 HOH A 258 658 233 HOH HOH . 
E 5 HOH A 259 659 256 HOH HOH . 
E 5 HOH A 260 660 32 HOH HOH . 
E 5 HOH A 261 661 199 HOH HOH . 
E 5 HOH A 262 662 261 HOH HOH . 
E 5 HOH A 263 663 276 HOH HOH . 
E 5 HOH A 264 664 220 HOH HOH . 
E 5 HOH A 265 665 254 HOH HOH . 
E 5 HOH A 266 666 202 HOH HOH . 
E 5 HOH A 267 667 270 HOH HOH . 
E 5 HOH A 268 668 251 HOH HOH . 
E 5 HOH A 269 669 236 HOH HOH . 
E 5 HOH A 270 670 123 HOH HOH . 
E 5 HOH A 271 671 179 HOH HOH . 
E 5 HOH A 272 672 194 HOH HOH . 
E 5 HOH A 273 673 163 HOH HOH . 
E 5 HOH A 274 674 171 HOH HOH . 
E 5 HOH A 275 675 203 HOH HOH . 
E 5 HOH A 276 676 221 HOH HOH . 
E 5 HOH A 277 677 140 HOH HOH . 
E 5 HOH A 278 678 281 HOH HOH . 
E 5 HOH A 279 679 181 HOH HOH . 
E 5 HOH A 280 680 268 HOH HOH . 
E 5 HOH A 281 681 232 HOH HOH . 
E 5 HOH A 282 682 129 HOH HOH . 
E 5 HOH A 283 683 165 HOH HOH . 
E 5 HOH A 284 684 227 HOH HOH . 
E 5 HOH A 285 685 162 HOH HOH . 
E 5 HOH A 286 686 192 HOH HOH . 
E 5 HOH A 287 687 117 HOH HOH . 
E 5 HOH A 288 688 262 HOH HOH . 
E 5 HOH A 289 689 253 HOH HOH . 
E 5 HOH A 290 690 219 HOH HOH . 
E 5 HOH A 291 691 238 HOH HOH . 
E 5 HOH A 292 692 87 HOH HOH . 
E 5 HOH A 293 693 278 HOH HOH . 
E 5 HOH A 294 694 115 HOH HOH . 
E 5 HOH A 295 695 217 HOH HOH . 
E 5 HOH A 296 696 264 HOH HOH . 
E 5 HOH A 297 697 267 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 16.884 3.401 46.874 1 20.43 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . D 4 17.742 2.654 47.76 1 22.86 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . D 4 15.798 4.103 47.677 1 25.2 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . D 4 16.416 5.053 48.553 1 28.9 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#