data_6YYJ
#
_model_server_result.job_id            mJh-d87fxU4eq6X-KsFfdA 
_model_server_result.datetime_utc      '2024-11-14 21:05:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yyj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":203}' 
#
_entry.id    6YYJ 
#
_exptl.entry_id    6YYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.237 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YYJ 
_cell.length_a            118.363 
_cell.length_b            98.231 
_cell.length_c            104.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 N N N 
? 5 R N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 84 A CYS 84 1_555 G CAC PXQ . A PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 B SG CYS 82 B CYS 82 1_555 I CAC PXQ . B PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale5 B SG CYS 153 B CYS 153 1_555 J CAC PXQ . B PXQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? 
covale ? covale6 C SG CYS 84 C CYS 84 1_555 L CAC PXQ . C PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale7 D C GLY 71 D GLY 71 1_555 D N MEN 72 D MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale8 D C MEN 72 D MEN 72 1_555 D N ALA 73 D ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale9 D SG CYS 82 D CYS 82 1_555 P CAC PXQ . D PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale10 D SG CYS 153 D CYS 153 1_555 Q CAC PXQ . D PXQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale11 E SG CYS 84 E CYS 84 1_555 S CAC PXQ . E PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale12 F C GLY 71 F GLY 71 1_555 F N MEN 72 F MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale13 F C MEN 72 F MEN 72 1_555 F N ALA 73 F ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale14 F SG CYS 82 F CYS 82 1_555 W CAC PXQ . F PXQ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? 
covale ? covale15 F SG CYS 153 F CYS 153 1_555 X CAC PXQ . F PXQ 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
#
_chem_comp.formula           'C6 H13 N O4 S' 
_chem_comp.formula_weight    195.237 
_chem_comp.id                MES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 MES sing 237 n n 
O1 C6 MES sing 238 n n 
C2 C3 MES sing 239 n n 
C2 H21 MES sing 240 n n 
C2 H22 MES sing 241 n n 
C3 N4 MES sing 242 n n 
C3 H31 MES sing 243 n n 
C3 H32 MES sing 244 n n 
N4 C5 MES sing 245 n n 
N4 C7 MES sing 246 n n 
N4 HN4 MES sing 247 n n 
C5 C6 MES sing 248 n n 
C5 H51 MES sing 249 n n 
C5 H52 MES sing 250 n n 
C6 H61 MES sing 251 n n 
C6 H62 MES sing 252 n n 
C7 C8 MES sing 253 n n 
C7 H71 MES sing 254 n n 
C7 H72 MES sing 255 n n 
C8 S MES sing 256 n n 
C8 H81 MES sing 257 n n 
C8 H82 MES sing 258 n n 
S O1S MES doub 259 n n 
S O2S MES doub 260 n n 
S O3S MES sing 261 n n 
#
_atom_sites.entry_id                     6YYJ 
_atom_sites.fract_transf_matrix[1][1]    0.008449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 PXQ A 1 201 489 PXQ CYC . 
H 4 PGE A 1 202 501 PGE PGE . 
I 3 PXQ B 1 201 500 PXQ CYC . 
J 3 PXQ B 1 202 501 PXQ CYC . 
K 5 MES B 1 203 701 MES MES . 
L 3 PXQ C 1 201 489 PXQ CYC . 
M 4 PGE C 1 202 601 PGE PGE . 
N 5 MES C 1 203 701 MES MES . 
O 4 PGE C 1 204 801 PGE PGE . 
P 3 PXQ D 1 201 500 PXQ CYC . 
Q 3 PXQ D 1 202 501 PXQ CYC . 
R 5 MES D 1 203 701 MES MES . 
S 3 PXQ E 1 201 489 PXQ CYC . 
T 4 PGE E 1 202 501 PGE PGE . 
U 4 PGE E 1 203 601 PGE PGE . 
V 5 MES E 1 204 701 MES MES . 
W 3 PXQ F 1 500 500 PXQ CYC . 
X 3 PXQ F 1 501 501 PXQ CYC . 
Y 6 HOH A 1 301 12 HOH HOH . 
Y 6 HOH A 2 302 50 HOH HOH . 
Y 6 HOH A 3 303 1 HOH HOH . 
Y 6 HOH A 4 304 126 HOH HOH . 
Y 6 HOH A 5 305 9 HOH HOH . 
Y 6 HOH A 6 306 77 HOH HOH . 
Y 6 HOH A 7 307 3 HOH HOH . 
Y 6 HOH A 8 308 80 HOH HOH . 
Y 6 HOH A 9 309 15 HOH HOH . 
Y 6 HOH A 10 310 165 HOH HOH . 
Y 6 HOH A 11 311 129 HOH HOH . 
Y 6 HOH A 12 312 79 HOH HOH . 
Y 6 HOH A 13 313 32 HOH HOH . 
Y 6 HOH A 14 314 166 HOH HOH . 
Y 6 HOH A 15 315 23 HOH HOH . 
Y 6 HOH A 16 316 19 HOH HOH . 
Y 6 HOH A 17 317 95 HOH HOH . 
Y 6 HOH A 18 318 55 HOH HOH . 
Y 6 HOH A 19 319 127 HOH HOH . 
Y 6 HOH A 20 320 81 HOH HOH . 
Y 6 HOH A 21 321 78 HOH HOH . 
Y 6 HOH A 22 322 10 HOH HOH . 
Y 6 HOH A 23 323 82 HOH HOH . 
Y 6 HOH A 24 324 163 HOH HOH . 
Z 6 HOH B 1 301 70 HOH HOH . 
Z 6 HOH B 2 302 149 HOH HOH . 
Z 6 HOH B 3 303 29 HOH HOH . 
Z 6 HOH B 4 304 156 HOH HOH . 
Z 6 HOH B 5 305 139 HOH HOH . 
Z 6 HOH B 6 306 65 HOH HOH . 
Z 6 HOH B 7 307 145 HOH HOH . 
Z 6 HOH B 8 308 43 HOH HOH . 
Z 6 HOH B 9 309 140 HOH HOH . 
Z 6 HOH B 10 310 161 HOH HOH . 
Z 6 HOH B 11 311 107 HOH HOH . 
Z 6 HOH B 12 312 5 HOH HOH . 
Z 6 HOH B 13 313 110 HOH HOH . 
Z 6 HOH B 14 314 41 HOH HOH . 
Z 6 HOH B 15 315 167 HOH HOH . 
Z 6 HOH B 16 316 124 HOH HOH . 
Z 6 HOH B 17 317 106 HOH HOH . 
Z 6 HOH B 18 318 54 HOH HOH . 
Z 6 HOH B 19 319 160 HOH HOH . 
Z 6 HOH B 20 320 136 HOH HOH . 
Z 6 HOH B 21 321 162 HOH HOH . 
Z 6 HOH B 22 322 42 HOH HOH . 
Z 6 HOH B 23 323 73 HOH HOH . 
Z 6 HOH B 24 324 68 HOH HOH . 
Z 6 HOH B 25 325 158 HOH HOH . 
Z 6 HOH B 26 326 157 HOH HOH . 
Z 6 HOH B 27 327 108 HOH HOH . 
Z 6 HOH B 28 328 40 HOH HOH . 
Z 6 HOH B 29 329 109 HOH HOH . 
AA 6 HOH C 1 301 168 HOH HOH . 
AA 6 HOH C 2 302 4 HOH HOH . 
AA 6 HOH C 3 303 71 HOH HOH . 
AA 6 HOH C 4 304 72 HOH HOH . 
AA 6 HOH C 5 305 141 HOH HOH . 
AA 6 HOH C 6 306 11 HOH HOH . 
AA 6 HOH C 7 307 148 HOH HOH . 
AA 6 HOH C 8 308 150 HOH HOH . 
AA 6 HOH C 9 309 48 HOH HOH . 
AA 6 HOH C 10 310 117 HOH HOH . 
AA 6 HOH C 11 311 144 HOH HOH . 
AA 6 HOH C 12 312 31 HOH HOH . 
AA 6 HOH C 13 313 51 HOH HOH . 
AA 6 HOH C 14 314 45 HOH HOH . 
AA 6 HOH C 15 315 122 HOH HOH . 
AA 6 HOH C 16 316 171 HOH HOH . 
AA 6 HOH C 17 317 30 HOH HOH . 
AA 6 HOH C 18 318 143 HOH HOH . 
AA 6 HOH C 19 319 84 HOH HOH . 
AA 6 HOH C 20 320 118 HOH HOH . 
AA 6 HOH C 21 321 83 HOH HOH . 
AA 6 HOH C 22 322 119 HOH HOH . 
AA 6 HOH C 23 323 155 HOH HOH . 
AA 6 HOH C 24 324 87 HOH HOH . 
AA 6 HOH C 25 325 120 HOH HOH . 
AA 6 HOH C 26 326 75 HOH HOH . 
AA 6 HOH C 27 327 86 HOH HOH . 
AA 6 HOH C 28 328 153 HOH HOH . 
AA 6 HOH C 29 329 151 HOH HOH . 
AA 6 HOH C 30 330 154 HOH HOH . 
BA 6 HOH D 1 301 13 HOH HOH . 
BA 6 HOH D 2 302 52 HOH HOH . 
BA 6 HOH D 3 303 21 HOH HOH . 
BA 6 HOH D 4 304 147 HOH HOH . 
BA 6 HOH D 5 305 67 HOH HOH . 
BA 6 HOH D 6 306 2 HOH HOH . 
BA 6 HOH D 7 307 16 HOH HOH . 
BA 6 HOH D 8 308 37 HOH HOH . 
BA 6 HOH D 9 309 123 HOH HOH . 
BA 6 HOH D 10 310 170 HOH HOH . 
BA 6 HOH D 11 311 113 HOH HOH . 
BA 6 HOH D 12 312 57 HOH HOH . 
BA 6 HOH D 13 313 56 HOH HOH . 
BA 6 HOH D 14 314 39 HOH HOH . 
BA 6 HOH D 15 315 59 HOH HOH . 
BA 6 HOH D 16 316 53 HOH HOH . 
BA 6 HOH D 17 317 131 HOH HOH . 
BA 6 HOH D 18 318 47 HOH HOH . 
BA 6 HOH D 19 319 14 HOH HOH . 
BA 6 HOH D 20 320 46 HOH HOH . 
BA 6 HOH D 21 321 114 HOH HOH . 
BA 6 HOH D 22 322 146 HOH HOH . 
BA 6 HOH D 23 323 38 HOH HOH . 
BA 6 HOH D 24 324 36 HOH HOH . 
BA 6 HOH D 25 325 76 HOH HOH . 
BA 6 HOH D 26 326 116 HOH HOH . 
BA 6 HOH D 27 327 35 HOH HOH . 
BA 6 HOH D 28 328 132 HOH HOH . 
BA 6 HOH D 29 329 115 HOH HOH . 
BA 6 HOH D 30 330 111 HOH HOH . 
BA 6 HOH D 31 331 112 HOH HOH . 
BA 6 HOH D 32 332 135 HOH HOH . 
BA 6 HOH D 33 333 134 HOH HOH . 
CA 6 HOH E 1 301 64 HOH HOH . 
CA 6 HOH E 2 302 138 HOH HOH . 
CA 6 HOH E 3 303 6 HOH HOH . 
CA 6 HOH E 4 304 60 HOH HOH . 
CA 6 HOH E 5 305 20 HOH HOH . 
CA 6 HOH E 6 306 88 HOH HOH . 
CA 6 HOH E 7 307 94 HOH HOH . 
CA 6 HOH E 8 308 17 HOH HOH . 
CA 6 HOH E 9 309 69 HOH HOH . 
CA 6 HOH E 10 310 105 HOH HOH . 
CA 6 HOH E 11 311 99 HOH HOH . 
CA 6 HOH E 12 312 33 HOH HOH . 
CA 6 HOH E 13 313 8 HOH HOH . 
CA 6 HOH E 14 314 44 HOH HOH . 
CA 6 HOH E 15 315 91 HOH HOH . 
CA 6 HOH E 16 316 96 HOH HOH . 
CA 6 HOH E 17 317 49 HOH HOH . 
CA 6 HOH E 18 318 104 HOH HOH . 
CA 6 HOH E 19 319 34 HOH HOH . 
CA 6 HOH E 20 320 18 HOH HOH . 
CA 6 HOH E 21 321 101 HOH HOH . 
CA 6 HOH E 22 322 58 HOH HOH . 
CA 6 HOH E 23 323 100 HOH HOH . 
CA 6 HOH E 24 324 125 HOH HOH . 
CA 6 HOH E 25 325 63 HOH HOH . 
CA 6 HOH E 26 326 98 HOH HOH . 
CA 6 HOH E 27 327 133 HOH HOH . 
CA 6 HOH E 28 328 90 HOH HOH . 
CA 6 HOH E 29 329 130 HOH HOH . 
CA 6 HOH E 30 330 26 HOH HOH . 
CA 6 HOH E 31 331 97 HOH HOH . 
CA 6 HOH E 32 332 62 HOH HOH . 
CA 6 HOH E 33 333 74 HOH HOH . 
CA 6 HOH E 34 334 89 HOH HOH . 
CA 6 HOH E 35 335 152 HOH HOH . 
CA 6 HOH E 36 336 61 HOH HOH . 
CA 6 HOH E 37 337 66 HOH HOH . 
DA 6 HOH F 1 601 142 HOH HOH . 
DA 6 HOH F 2 602 7 HOH HOH . 
DA 6 HOH F 3 603 102 HOH HOH . 
DA 6 HOH F 4 604 169 HOH HOH . 
DA 6 HOH F 5 605 128 HOH HOH . 
DA 6 HOH F 6 606 28 HOH HOH . 
DA 6 HOH F 7 607 22 HOH HOH . 
DA 6 HOH F 8 608 103 HOH HOH . 
DA 6 HOH F 9 609 24 HOH HOH . 
DA 6 HOH F 10 610 25 HOH HOH . 
DA 6 HOH F 11 611 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MES . . . K 5 21.709 3.377 32.384 1 113.76 ? O1 MES 203 B 1 
HETATM 2 C C2 MES . . . K 5 22.879 3.995 31.85 1 142.1 ? C2 MES 203 B 1 
HETATM 3 C C3 MES . . . K 5 24.012 4.08 32.862 1 143.93 ? C3 MES 203 B 1 
HETATM 4 N N4 MES . . . K 5 24.146 2.758 33.451 1 145.58 ? N4 MES 203 B 1 
HETATM 5 C C5 MES . . . K 5 22.986 2.239 34.139 1 130.48 ? C5 MES 203 B 1 
HETATM 6 C C6 MES . . . K 5 21.918 2.136 33.063 1 123.12 ? C6 MES 203 B 1 
HETATM 7 C C7 MES . . . K 5 25.425 2.465 34.063 1 200.39 ? C7 MES 203 B 1 
HETATM 8 C C8 MES . . . K 5 26.333 3.578 33.561 1 203.64 ? C8 MES 203 B 1 
HETATM 9 S S MES . . . K 5 27.288 2.954 32.354 1 130.94 ? S MES 203 B 1 
HETATM 10 O O1S MES . . . K 5 26.432 2.496 31.233 1 141.25 ? O1S MES 203 B 1 
HETATM 11 O O2S MES . . . K 5 28.24 3.984 31.887 1 112.7 ? O2S MES 203 B 1 
HETATM 12 O O3S MES . . . K 5 28.065 1.824 32.905 1 121.61 ? O3S MES 203 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           12 
#