data_6YYJ # _model_server_result.job_id K87aLIAdL8Jf5J2YwGJF5A _model_server_result.datetime_utc '2024-11-14 20:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":203}' # _entry.id 6YYJ # _exptl.entry_id 6YYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YYJ _cell.length_a 118.363 _cell.length_b 98.231 _cell.length_c 104.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N ? 4 O N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 G CAC PXQ . A PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B SG CYS 82 B CYS 82 1_555 I CAC PXQ . B PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale5 B SG CYS 153 B CYS 153 1_555 J CAC PXQ . B PXQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 C SG CYS 84 C CYS 84 1_555 L CAC PXQ . C PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale7 D C GLY 71 D GLY 71 1_555 D N MEN 72 D MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale8 D C MEN 72 D MEN 72 1_555 D N ALA 73 D ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 D SG CYS 82 D CYS 82 1_555 P CAC PXQ . D PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale10 D SG CYS 153 D CYS 153 1_555 Q CAC PXQ . D PXQ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale11 E SG CYS 84 E CYS 84 1_555 S CAC PXQ . E PXQ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale12 F C GLY 71 F GLY 71 1_555 F N MEN 72 F MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale13 F C MEN 72 F MEN 72 1_555 F N ALA 73 F ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 F SG CYS 82 F CYS 82 1_555 W CAC PXQ . F PXQ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? covale ? covale15 F SG CYS 153 F CYS 153 1_555 X CAC PXQ . F PXQ 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 281 n n C1 C2 PGE sing 282 n n C1 H1 PGE sing 283 n n C1 H12 PGE sing 284 n n O1 HO1 PGE sing 285 n n C2 O2 PGE sing 286 n n C2 H2 PGE sing 287 n n C2 H22 PGE sing 288 n n O2 C3 PGE sing 289 n n C3 C4 PGE sing 290 n n C3 H3 PGE sing 291 n n C3 H32 PGE sing 292 n n C4 O3 PGE sing 293 n n C4 H4 PGE sing 294 n n C4 H42 PGE sing 295 n n O4 C6 PGE sing 296 n n O4 HO4 PGE sing 297 n n C6 C5 PGE sing 298 n n C6 H6 PGE sing 299 n n C6 H62 PGE sing 300 n n C5 O3 PGE sing 301 n n C5 H5 PGE sing 302 n n C5 H52 PGE sing 303 n n # _atom_sites.entry_id 6YYJ _atom_sites.fract_transf_matrix[1][1] 0.008449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 PXQ A 1 201 489 PXQ CYC . H 4 PGE A 1 202 501 PGE PGE . I 3 PXQ B 1 201 500 PXQ CYC . J 3 PXQ B 1 202 501 PXQ CYC . K 5 MES B 1 203 701 MES MES . L 3 PXQ C 1 201 489 PXQ CYC . M 4 PGE C 1 202 601 PGE PGE . N 5 MES C 1 203 701 MES MES . O 4 PGE C 1 204 801 PGE PGE . P 3 PXQ D 1 201 500 PXQ CYC . Q 3 PXQ D 1 202 501 PXQ CYC . R 5 MES D 1 203 701 MES MES . S 3 PXQ E 1 201 489 PXQ CYC . T 4 PGE E 1 202 501 PGE PGE . U 4 PGE E 1 203 601 PGE PGE . V 5 MES E 1 204 701 MES MES . W 3 PXQ F 1 500 500 PXQ CYC . X 3 PXQ F 1 501 501 PXQ CYC . Y 6 HOH A 1 301 12 HOH HOH . Y 6 HOH A 2 302 50 HOH HOH . Y 6 HOH A 3 303 1 HOH HOH . Y 6 HOH A 4 304 126 HOH HOH . Y 6 HOH A 5 305 9 HOH HOH . Y 6 HOH A 6 306 77 HOH HOH . Y 6 HOH A 7 307 3 HOH HOH . Y 6 HOH A 8 308 80 HOH HOH . Y 6 HOH A 9 309 15 HOH HOH . Y 6 HOH A 10 310 165 HOH HOH . Y 6 HOH A 11 311 129 HOH HOH . Y 6 HOH A 12 312 79 HOH HOH . Y 6 HOH A 13 313 32 HOH HOH . Y 6 HOH A 14 314 166 HOH HOH . Y 6 HOH A 15 315 23 HOH HOH . Y 6 HOH A 16 316 19 HOH HOH . Y 6 HOH A 17 317 95 HOH HOH . Y 6 HOH A 18 318 55 HOH HOH . Y 6 HOH A 19 319 127 HOH HOH . Y 6 HOH A 20 320 81 HOH HOH . Y 6 HOH A 21 321 78 HOH HOH . Y 6 HOH A 22 322 10 HOH HOH . Y 6 HOH A 23 323 82 HOH HOH . Y 6 HOH A 24 324 163 HOH HOH . Z 6 HOH B 1 301 70 HOH HOH . Z 6 HOH B 2 302 149 HOH HOH . Z 6 HOH B 3 303 29 HOH HOH . Z 6 HOH B 4 304 156 HOH HOH . Z 6 HOH B 5 305 139 HOH HOH . Z 6 HOH B 6 306 65 HOH HOH . Z 6 HOH B 7 307 145 HOH HOH . Z 6 HOH B 8 308 43 HOH HOH . Z 6 HOH B 9 309 140 HOH HOH . Z 6 HOH B 10 310 161 HOH HOH . Z 6 HOH B 11 311 107 HOH HOH . Z 6 HOH B 12 312 5 HOH HOH . Z 6 HOH B 13 313 110 HOH HOH . Z 6 HOH B 14 314 41 HOH HOH . Z 6 HOH B 15 315 167 HOH HOH . Z 6 HOH B 16 316 124 HOH HOH . Z 6 HOH B 17 317 106 HOH HOH . Z 6 HOH B 18 318 54 HOH HOH . Z 6 HOH B 19 319 160 HOH HOH . Z 6 HOH B 20 320 136 HOH HOH . Z 6 HOH B 21 321 162 HOH HOH . Z 6 HOH B 22 322 42 HOH HOH . Z 6 HOH B 23 323 73 HOH HOH . Z 6 HOH B 24 324 68 HOH HOH . Z 6 HOH B 25 325 158 HOH HOH . Z 6 HOH B 26 326 157 HOH HOH . Z 6 HOH B 27 327 108 HOH HOH . Z 6 HOH B 28 328 40 HOH HOH . Z 6 HOH B 29 329 109 HOH HOH . AA 6 HOH C 1 301 168 HOH HOH . AA 6 HOH C 2 302 4 HOH HOH . AA 6 HOH C 3 303 71 HOH HOH . AA 6 HOH C 4 304 72 HOH HOH . AA 6 HOH C 5 305 141 HOH HOH . AA 6 HOH C 6 306 11 HOH HOH . AA 6 HOH C 7 307 148 HOH HOH . AA 6 HOH C 8 308 150 HOH HOH . AA 6 HOH C 9 309 48 HOH HOH . AA 6 HOH C 10 310 117 HOH HOH . AA 6 HOH C 11 311 144 HOH HOH . AA 6 HOH C 12 312 31 HOH HOH . AA 6 HOH C 13 313 51 HOH HOH . AA 6 HOH C 14 314 45 HOH HOH . AA 6 HOH C 15 315 122 HOH HOH . AA 6 HOH C 16 316 171 HOH HOH . AA 6 HOH C 17 317 30 HOH HOH . AA 6 HOH C 18 318 143 HOH HOH . AA 6 HOH C 19 319 84 HOH HOH . AA 6 HOH C 20 320 118 HOH HOH . AA 6 HOH C 21 321 83 HOH HOH . AA 6 HOH C 22 322 119 HOH HOH . AA 6 HOH C 23 323 155 HOH HOH . AA 6 HOH C 24 324 87 HOH HOH . AA 6 HOH C 25 325 120 HOH HOH . AA 6 HOH C 26 326 75 HOH HOH . AA 6 HOH C 27 327 86 HOH HOH . AA 6 HOH C 28 328 153 HOH HOH . AA 6 HOH C 29 329 151 HOH HOH . AA 6 HOH C 30 330 154 HOH HOH . BA 6 HOH D 1 301 13 HOH HOH . BA 6 HOH D 2 302 52 HOH HOH . BA 6 HOH D 3 303 21 HOH HOH . BA 6 HOH D 4 304 147 HOH HOH . BA 6 HOH D 5 305 67 HOH HOH . BA 6 HOH D 6 306 2 HOH HOH . BA 6 HOH D 7 307 16 HOH HOH . BA 6 HOH D 8 308 37 HOH HOH . BA 6 HOH D 9 309 123 HOH HOH . BA 6 HOH D 10 310 170 HOH HOH . BA 6 HOH D 11 311 113 HOH HOH . BA 6 HOH D 12 312 57 HOH HOH . BA 6 HOH D 13 313 56 HOH HOH . BA 6 HOH D 14 314 39 HOH HOH . BA 6 HOH D 15 315 59 HOH HOH . BA 6 HOH D 16 316 53 HOH HOH . BA 6 HOH D 17 317 131 HOH HOH . BA 6 HOH D 18 318 47 HOH HOH . BA 6 HOH D 19 319 14 HOH HOH . BA 6 HOH D 20 320 46 HOH HOH . BA 6 HOH D 21 321 114 HOH HOH . BA 6 HOH D 22 322 146 HOH HOH . BA 6 HOH D 23 323 38 HOH HOH . BA 6 HOH D 24 324 36 HOH HOH . BA 6 HOH D 25 325 76 HOH HOH . BA 6 HOH D 26 326 116 HOH HOH . BA 6 HOH D 27 327 35 HOH HOH . BA 6 HOH D 28 328 132 HOH HOH . BA 6 HOH D 29 329 115 HOH HOH . BA 6 HOH D 30 330 111 HOH HOH . BA 6 HOH D 31 331 112 HOH HOH . BA 6 HOH D 32 332 135 HOH HOH . BA 6 HOH D 33 333 134 HOH HOH . CA 6 HOH E 1 301 64 HOH HOH . CA 6 HOH E 2 302 138 HOH HOH . CA 6 HOH E 3 303 6 HOH HOH . CA 6 HOH E 4 304 60 HOH HOH . CA 6 HOH E 5 305 20 HOH HOH . CA 6 HOH E 6 306 88 HOH HOH . CA 6 HOH E 7 307 94 HOH HOH . CA 6 HOH E 8 308 17 HOH HOH . CA 6 HOH E 9 309 69 HOH HOH . CA 6 HOH E 10 310 105 HOH HOH . CA 6 HOH E 11 311 99 HOH HOH . CA 6 HOH E 12 312 33 HOH HOH . CA 6 HOH E 13 313 8 HOH HOH . CA 6 HOH E 14 314 44 HOH HOH . CA 6 HOH E 15 315 91 HOH HOH . CA 6 HOH E 16 316 96 HOH HOH . CA 6 HOH E 17 317 49 HOH HOH . CA 6 HOH E 18 318 104 HOH HOH . CA 6 HOH E 19 319 34 HOH HOH . CA 6 HOH E 20 320 18 HOH HOH . CA 6 HOH E 21 321 101 HOH HOH . CA 6 HOH E 22 322 58 HOH HOH . CA 6 HOH E 23 323 100 HOH HOH . CA 6 HOH E 24 324 125 HOH HOH . CA 6 HOH E 25 325 63 HOH HOH . CA 6 HOH E 26 326 98 HOH HOH . CA 6 HOH E 27 327 133 HOH HOH . CA 6 HOH E 28 328 90 HOH HOH . CA 6 HOH E 29 329 130 HOH HOH . CA 6 HOH E 30 330 26 HOH HOH . CA 6 HOH E 31 331 97 HOH HOH . CA 6 HOH E 32 332 62 HOH HOH . CA 6 HOH E 33 333 74 HOH HOH . CA 6 HOH E 34 334 89 HOH HOH . CA 6 HOH E 35 335 152 HOH HOH . CA 6 HOH E 36 336 61 HOH HOH . CA 6 HOH E 37 337 66 HOH HOH . DA 6 HOH F 1 601 142 HOH HOH . DA 6 HOH F 2 602 7 HOH HOH . DA 6 HOH F 3 603 102 HOH HOH . DA 6 HOH F 4 604 169 HOH HOH . DA 6 HOH F 5 605 128 HOH HOH . DA 6 HOH F 6 606 28 HOH HOH . DA 6 HOH F 7 607 22 HOH HOH . DA 6 HOH F 8 608 103 HOH HOH . DA 6 HOH F 9 609 24 HOH HOH . DA 6 HOH F 10 610 25 HOH HOH . DA 6 HOH F 11 611 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . U 4 44.457 23.184 42.914 1 56.74 ? C1 PGE 203 E 1 HETATM 2 O O1 PGE . . . U 4 44.61 21.938 42.213 1 61.07 ? O1 PGE 203 E 1 HETATM 3 C C2 PGE . . . U 4 43.066 23.78 42.72 1 59.23 ? C2 PGE 203 E 1 HETATM 4 O O2 PGE . . . U 4 43.019 24.644 41.585 1 50.66 ? O2 PGE 203 E 1 HETATM 5 C C3 PGE . . . U 4 41.981 25.616 41.578 1 45.06 ? C3 PGE 203 E 1 HETATM 6 C C4 PGE . . . U 4 40.851 25.149 40.665 1 51.28 ? C4 PGE 203 E 1 HETATM 7 O O4 PGE . . . U 4 38.232 22.236 42.31 1 43.59 ? O4 PGE 203 E 1 HETATM 8 C C6 PGE . . . U 4 37.787 23.184 41.343 1 51.55 ? C6 PGE 203 E 1 HETATM 9 C C5 PGE . . . U 4 38.913 23.81 40.528 1 39.46 ? C5 PGE 203 E 1 HETATM 10 O O3 PGE . . . U 4 39.943 24.296 41.367 1 45.43 ? O3 PGE 203 E 1 HETATM 11 H H1 PGE . . . U 4 45.185 23.93 42.56 1 68.15 ? H1 PGE 203 E 1 HETATM 12 H H12 PGE . . . U 4 44.609 23.052 43.995 1 68.15 ? H12 PGE 203 E 1 HETATM 13 H HO1 PGE . . . U 4 45.371 22.008 41.621 1 73.34 ? HO1 PGE 203 E 1 HETATM 14 H H2 PGE . . . U 4 42.791 24.334 43.634 1 71.15 ? H2 PGE 203 E 1 HETATM 15 H H22 PGE . . . U 4 42.344 22.953 42.601 1 71.15 ? H22 PGE 203 E 1 HETATM 16 H H3 PGE . . . U 4 42.356 26.587 41.214 1 54.13 ? H3 PGE 203 E 1 HETATM 17 H H32 PGE . . . U 4 41.58 25.77 42.593 1 54.13 ? H32 PGE 203 E 1 HETATM 18 H H4 PGE . . . U 4 41.291 24.615 39.804 1 61.6 ? H4 PGE 203 E 1 HETATM 19 H H42 PGE . . . U 4 40.322 26.036 40.276 1 61.6 ? H42 PGE 203 E 1 HETATM 20 H HO4 PGE . . . U 4 37.464 21.906 42.793 1 52.37 ? HO4 PGE 203 E 1 HETATM 21 H H6 PGE . . . U 4 37.247 24.011 41.834 1 61.93 ? H6 PGE 203 E 1 HETATM 22 H H62 PGE . . . U 4 37.097 22.708 40.626 1 61.93 ? H62 PGE 203 E 1 HETATM 23 H H5 PGE . . . U 4 38.489 24.627 39.921 1 47.42 ? H5 PGE 203 E 1 HETATM 24 H H52 PGE . . . U 4 39.305 23.047 39.835 1 47.42 ? H52 PGE 203 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 152 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 38 _model_server_stats.element_count 24 #