data_6YYU # _model_server_result.job_id HoviYukWCJ5pg7DZ2o3GXw _model_server_result.datetime_utc '2024-11-08 22:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6YYU # _exptl.entry_id 6YYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YYU _cell.length_a 48.791 _cell.length_b 70.003 _cell.length_c 170.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 B MN MN . A MN 801 1_555 C O5 AKG . A AKG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc4 B MN MN . A MN 801 1_555 D O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 B MN MN . A MN 801 1_555 D O HOH . A HOH 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YYU _atom_sites.fract_transf_matrix[1][1] 0.020496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 801 801 MN MN . C 3 AKG A 1 802 1 AKG AKG . D 4 HOH A 1 901 5 HOH HOH . D 4 HOH A 2 902 52 HOH HOH . D 4 HOH A 3 903 10 HOH HOH . D 4 HOH A 4 904 19 HOH HOH . D 4 HOH A 5 905 1 HOH HOH . D 4 HOH A 6 906 7 HOH HOH . D 4 HOH A 7 907 64 HOH HOH . D 4 HOH A 8 908 2 HOH HOH . D 4 HOH A 9 909 9 HOH HOH . D 4 HOH A 10 910 113 HOH HOH . D 4 HOH A 11 911 48 HOH HOH . D 4 HOH A 12 912 13 HOH HOH . D 4 HOH A 13 913 18 HOH HOH . D 4 HOH A 14 914 41 HOH HOH . D 4 HOH A 15 915 14 HOH HOH . D 4 HOH A 16 916 3 HOH HOH . D 4 HOH A 17 917 81 HOH HOH . D 4 HOH A 18 918 121 HOH HOH . D 4 HOH A 19 919 60 HOH HOH . D 4 HOH A 20 920 115 HOH HOH . D 4 HOH A 21 921 105 HOH HOH . D 4 HOH A 22 922 56 HOH HOH . D 4 HOH A 23 923 25 HOH HOH . D 4 HOH A 24 924 85 HOH HOH . D 4 HOH A 25 925 11 HOH HOH . D 4 HOH A 26 926 32 HOH HOH . D 4 HOH A 27 927 58 HOH HOH . D 4 HOH A 28 928 111 HOH HOH . D 4 HOH A 29 929 96 HOH HOH . D 4 HOH A 30 930 21 HOH HOH . D 4 HOH A 31 931 4 HOH HOH . D 4 HOH A 32 932 80 HOH HOH . D 4 HOH A 33 933 22 HOH HOH . D 4 HOH A 34 934 35 HOH HOH . D 4 HOH A 35 935 68 HOH HOH . D 4 HOH A 36 936 114 HOH HOH . D 4 HOH A 37 937 8 HOH HOH . D 4 HOH A 38 938 106 HOH HOH . D 4 HOH A 39 939 116 HOH HOH . D 4 HOH A 40 940 42 HOH HOH . D 4 HOH A 41 941 103 HOH HOH . D 4 HOH A 42 942 93 HOH HOH . D 4 HOH A 43 943 6 HOH HOH . D 4 HOH A 44 944 59 HOH HOH . D 4 HOH A 45 945 94 HOH HOH . D 4 HOH A 46 946 89 HOH HOH . D 4 HOH A 47 947 20 HOH HOH . D 4 HOH A 48 948 112 HOH HOH . D 4 HOH A 49 949 24 HOH HOH . D 4 HOH A 50 950 40 HOH HOH . D 4 HOH A 51 951 30 HOH HOH . D 4 HOH A 52 952 72 HOH HOH . D 4 HOH A 53 953 119 HOH HOH . D 4 HOH A 54 954 108 HOH HOH . D 4 HOH A 55 955 95 HOH HOH . D 4 HOH A 56 956 86 HOH HOH . D 4 HOH A 57 957 71 HOH HOH . D 4 HOH A 58 958 88 HOH HOH . D 4 HOH A 59 959 66 HOH HOH . D 4 HOH A 60 960 46 HOH HOH . D 4 HOH A 61 961 91 HOH HOH . D 4 HOH A 62 962 47 HOH HOH . D 4 HOH A 63 963 77 HOH HOH . D 4 HOH A 64 964 90 HOH HOH . D 4 HOH A 65 965 49 HOH HOH . D 4 HOH A 66 966 43 HOH HOH . D 4 HOH A 67 967 97 HOH HOH . D 4 HOH A 68 968 31 HOH HOH . D 4 HOH A 69 969 110 HOH HOH . D 4 HOH A 70 970 57 HOH HOH . D 4 HOH A 71 971 73 HOH HOH . D 4 HOH A 72 972 74 HOH HOH . D 4 HOH A 73 973 84 HOH HOH . D 4 HOH A 74 974 117 HOH HOH . D 4 HOH A 75 975 83 HOH HOH . D 4 HOH A 76 976 50 HOH HOH . D 4 HOH A 77 977 109 HOH HOH . D 4 HOH A 78 978 37 HOH HOH . D 4 HOH A 79 979 44 HOH HOH . D 4 HOH A 80 980 39 HOH HOH . D 4 HOH A 81 981 79 HOH HOH . D 4 HOH A 82 982 100 HOH HOH . D 4 HOH A 83 983 54 HOH HOH . D 4 HOH A 84 984 36 HOH HOH . D 4 HOH A 85 985 62 HOH HOH . D 4 HOH A 86 986 118 HOH HOH . D 4 HOH A 87 987 67 HOH HOH . D 4 HOH A 88 988 61 HOH HOH . D 4 HOH A 89 989 45 HOH HOH . D 4 HOH A 90 990 120 HOH HOH . D 4 HOH A 91 991 33 HOH HOH . D 4 HOH A 92 992 53 HOH HOH . D 4 HOH A 93 993 104 HOH HOH . D 4 HOH A 94 994 99 HOH HOH . D 4 HOH A 95 995 78 HOH HOH . D 4 HOH A 96 996 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.287 _atom_site.Cartn_y 6.752 _atom_site.Cartn_z -17.042 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 78 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #