data_6YYU
#
_model_server_result.job_id            xzOrJbOU7NMePf04hEZ-DQ 
_model_server_result.datetime_utc      '2024-11-22 19:45:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    6YYU 
#
_exptl.entry_id    6YYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YYU 
_cell.length_a            48.791 
_cell.length_b            70.003 
_cell.length_c            170.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 B MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc3 B MN MN . A MN 801 1_555 C O5 AKG . A AKG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc4 B MN MN . A MN 801 1_555 D O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc5 B MN MN . A MN 801 1_555 D O HOH . A HOH 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     6YYU 
_atom_sites.fract_transf_matrix[1][1]    0.020496 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 801 801 MN MN . 
C 3 AKG A 1 802 1 AKG AKG . 
D 4 HOH A 1 901 5 HOH HOH . 
D 4 HOH A 2 902 52 HOH HOH . 
D 4 HOH A 3 903 10 HOH HOH . 
D 4 HOH A 4 904 19 HOH HOH . 
D 4 HOH A 5 905 1 HOH HOH . 
D 4 HOH A 6 906 7 HOH HOH . 
D 4 HOH A 7 907 64 HOH HOH . 
D 4 HOH A 8 908 2 HOH HOH . 
D 4 HOH A 9 909 9 HOH HOH . 
D 4 HOH A 10 910 113 HOH HOH . 
D 4 HOH A 11 911 48 HOH HOH . 
D 4 HOH A 12 912 13 HOH HOH . 
D 4 HOH A 13 913 18 HOH HOH . 
D 4 HOH A 14 914 41 HOH HOH . 
D 4 HOH A 15 915 14 HOH HOH . 
D 4 HOH A 16 916 3 HOH HOH . 
D 4 HOH A 17 917 81 HOH HOH . 
D 4 HOH A 18 918 121 HOH HOH . 
D 4 HOH A 19 919 60 HOH HOH . 
D 4 HOH A 20 920 115 HOH HOH . 
D 4 HOH A 21 921 105 HOH HOH . 
D 4 HOH A 22 922 56 HOH HOH . 
D 4 HOH A 23 923 25 HOH HOH . 
D 4 HOH A 24 924 85 HOH HOH . 
D 4 HOH A 25 925 11 HOH HOH . 
D 4 HOH A 26 926 32 HOH HOH . 
D 4 HOH A 27 927 58 HOH HOH . 
D 4 HOH A 28 928 111 HOH HOH . 
D 4 HOH A 29 929 96 HOH HOH . 
D 4 HOH A 30 930 21 HOH HOH . 
D 4 HOH A 31 931 4 HOH HOH . 
D 4 HOH A 32 932 80 HOH HOH . 
D 4 HOH A 33 933 22 HOH HOH . 
D 4 HOH A 34 934 35 HOH HOH . 
D 4 HOH A 35 935 68 HOH HOH . 
D 4 HOH A 36 936 114 HOH HOH . 
D 4 HOH A 37 937 8 HOH HOH . 
D 4 HOH A 38 938 106 HOH HOH . 
D 4 HOH A 39 939 116 HOH HOH . 
D 4 HOH A 40 940 42 HOH HOH . 
D 4 HOH A 41 941 103 HOH HOH . 
D 4 HOH A 42 942 93 HOH HOH . 
D 4 HOH A 43 943 6 HOH HOH . 
D 4 HOH A 44 944 59 HOH HOH . 
D 4 HOH A 45 945 94 HOH HOH . 
D 4 HOH A 46 946 89 HOH HOH . 
D 4 HOH A 47 947 20 HOH HOH . 
D 4 HOH A 48 948 112 HOH HOH . 
D 4 HOH A 49 949 24 HOH HOH . 
D 4 HOH A 50 950 40 HOH HOH . 
D 4 HOH A 51 951 30 HOH HOH . 
D 4 HOH A 52 952 72 HOH HOH . 
D 4 HOH A 53 953 119 HOH HOH . 
D 4 HOH A 54 954 108 HOH HOH . 
D 4 HOH A 55 955 95 HOH HOH . 
D 4 HOH A 56 956 86 HOH HOH . 
D 4 HOH A 57 957 71 HOH HOH . 
D 4 HOH A 58 958 88 HOH HOH . 
D 4 HOH A 59 959 66 HOH HOH . 
D 4 HOH A 60 960 46 HOH HOH . 
D 4 HOH A 61 961 91 HOH HOH . 
D 4 HOH A 62 962 47 HOH HOH . 
D 4 HOH A 63 963 77 HOH HOH . 
D 4 HOH A 64 964 90 HOH HOH . 
D 4 HOH A 65 965 49 HOH HOH . 
D 4 HOH A 66 966 43 HOH HOH . 
D 4 HOH A 67 967 97 HOH HOH . 
D 4 HOH A 68 968 31 HOH HOH . 
D 4 HOH A 69 969 110 HOH HOH . 
D 4 HOH A 70 970 57 HOH HOH . 
D 4 HOH A 71 971 73 HOH HOH . 
D 4 HOH A 72 972 74 HOH HOH . 
D 4 HOH A 73 973 84 HOH HOH . 
D 4 HOH A 74 974 117 HOH HOH . 
D 4 HOH A 75 975 83 HOH HOH . 
D 4 HOH A 76 976 50 HOH HOH . 
D 4 HOH A 77 977 109 HOH HOH . 
D 4 HOH A 78 978 37 HOH HOH . 
D 4 HOH A 79 979 44 HOH HOH . 
D 4 HOH A 80 980 39 HOH HOH . 
D 4 HOH A 81 981 79 HOH HOH . 
D 4 HOH A 82 982 100 HOH HOH . 
D 4 HOH A 83 983 54 HOH HOH . 
D 4 HOH A 84 984 36 HOH HOH . 
D 4 HOH A 85 985 62 HOH HOH . 
D 4 HOH A 86 986 118 HOH HOH . 
D 4 HOH A 87 987 67 HOH HOH . 
D 4 HOH A 88 988 61 HOH HOH . 
D 4 HOH A 89 989 45 HOH HOH . 
D 4 HOH A 90 990 120 HOH HOH . 
D 4 HOH A 91 991 33 HOH HOH . 
D 4 HOH A 92 992 53 HOH HOH . 
D 4 HOH A 93 993 104 HOH HOH . 
D 4 HOH A 94 994 99 HOH HOH . 
D 4 HOH A 95 995 78 HOH HOH . 
D 4 HOH A 96 996 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . C 3 -9.064 7.695 -15.284 1 66.69 ? C1 AKG 802 A 1 
HETATM 2 O O1 AKG . . . C 3 -8.927 7.455 -16.5 1 72.02 ? O1 AKG 802 A 1 
HETATM 3 O O2 AKG . . . C 3 -8.171 8.304 -14.714 1 28.4 ? O2 AKG 802 A 1 
HETATM 4 C C2 AKG . . . C 3 -10.138 7.347 -14.329 1 57.57 ? C2 AKG 802 A 1 
HETATM 5 O O5 AKG . . . C 3 -11.012 6.659 -14.642 1 70.21 ? O5 AKG 802 A 1 
HETATM 6 C C3 AKG . . . C 3 -9.861 7.97 -12.968 1 52.59 ? C3 AKG 802 A 1 
HETATM 7 C C4 AKG . . . C 3 -11.098 8.019 -12.101 1 53.71 ? C4 AKG 802 A 1 
HETATM 8 C C5 AKG . . . C 3 -10.906 8.825 -10.814 1 38.37 ? C5 AKG 802 A 1 
HETATM 9 O O3 AKG . . . C 3 -11.042 10.085 -10.818 1 41.28 ? O3 AKG 802 A 1 
HETATM 10 O O4 AKG . . . C 3 -10.719 8.199 -9.731 1 34.4 ? O4 AKG 802 A 1 
HETATM 11 H H31 AKG . . . C 3 -9.102 7.381 -12.462 1 63.21 ? H31 AKG 802 A 1 
HETATM 12 H H32 AKG . . . C 3 -9.496 8.981 -13.114 1 63.21 ? H32 AKG 802 A 1 
HETATM 13 H H41 AKG . . . C 3 -11.371 7.004 -11.833 1 64.55 ? H41 AKG 802 A 1 
HETATM 14 H H42 AKG . . . C 3 -11.901 8.471 -12.673 1 64.55 ? H42 AKG 802 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#