data_6YYY
#
_model_server_result.job_id            qS5UGO_EQUsqrUOV4bu_vg 
_model_server_result.datetime_utc      '2024-11-08 19:57:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yyy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6YYY 
#
_exptl.entry_id    6YYY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              174.151 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,2-dimethyl-4-oxidanylidene-pentanedioic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YYY 
_cell.length_a            125.815 
_cell.length_b            50.318 
_cell.length_c            86.603 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YYY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc3 C MN MN . A MN 801 1_555 D O01 Q1W . A Q1W 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc4 C MN MN . A MN 801 1_555 D O02 Q1W . A Q1W 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc5 C MN MN . A MN 801 1_555 E O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
#
_chem_comp.formula           'C7 H10 O5' 
_chem_comp.formula_weight    174.151 
_chem_comp.id                Q1W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,2-dimethyl-4-oxidanylidene-pentanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C04 Q1W sing 277 n n 
O05 C05 Q1W doub 278 n n 
O01 C02 Q1W doub 279 n n 
O02 C01 Q1W doub 280 n n 
C02 C01 Q1W sing 281 n n 
C02 C03 Q1W sing 282 n n 
C05 C04 Q1W sing 283 n n 
C05 O04 Q1W sing 284 n n 
C01 O03 Q1W sing 285 n n 
C04 C03 Q1W sing 286 n n 
C04 C06 Q1W sing 287 n n 
C03 H01 Q1W sing 288 n n 
C03 H02 Q1W sing 289 n n 
C06 H04 Q1W sing 290 n n 
C06 H06 Q1W sing 291 n n 
C06 H05 Q1W sing 292 n n 
C07 H07 Q1W sing 293 n n 
C07 H09 Q1W sing 294 n n 
C07 H08 Q1W sing 295 n n 
O03 H1 Q1W sing 296 n n 
O04 H2 Q1W sing 297 n n 
#
_atom_sites.entry_id                     6YYY 
_atom_sites.fract_transf_matrix[1][1]    0.007948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 801 801 MN MN . 
D 4 Q1W A 1 802 1 Q1W LIG . 
E 5 HOH A 1 901 30 HOH HOH . 
E 5 HOH A 2 902 26 HOH HOH . 
E 5 HOH A 3 903 11 HOH HOH . 
E 5 HOH A 4 904 61 HOH HOH . 
E 5 HOH A 5 905 3 HOH HOH . 
E 5 HOH A 6 906 56 HOH HOH . 
E 5 HOH A 7 907 69 HOH HOH . 
E 5 HOH A 8 908 82 HOH HOH . 
E 5 HOH A 9 909 17 HOH HOH . 
E 5 HOH A 10 910 29 HOH HOH . 
E 5 HOH A 11 911 7 HOH HOH . 
E 5 HOH A 12 912 41 HOH HOH . 
E 5 HOH A 13 913 80 HOH HOH . 
E 5 HOH A 14 914 34 HOH HOH . 
E 5 HOH A 15 915 10 HOH HOH . 
E 5 HOH A 16 916 24 HOH HOH . 
E 5 HOH A 17 917 16 HOH HOH . 
E 5 HOH A 18 918 20 HOH HOH . 
E 5 HOH A 19 919 79 HOH HOH . 
E 5 HOH A 20 920 2 HOH HOH . 
E 5 HOH A 21 921 12 HOH HOH . 
E 5 HOH A 22 922 5 HOH HOH . 
E 5 HOH A 23 923 25 HOH HOH . 
E 5 HOH A 24 924 1 HOH HOH . 
E 5 HOH A 25 925 40 HOH HOH . 
E 5 HOH A 26 926 66 HOH HOH . 
E 5 HOH A 27 927 83 HOH HOH . 
E 5 HOH A 28 928 18 HOH HOH . 
E 5 HOH A 29 929 13 HOH HOH . 
E 5 HOH A 30 930 70 HOH HOH . 
E 5 HOH A 31 931 15 HOH HOH . 
E 5 HOH A 32 932 9 HOH HOH . 
E 5 HOH A 33 933 22 HOH HOH . 
E 5 HOH A 34 934 46 HOH HOH . 
E 5 HOH A 35 935 44 HOH HOH . 
E 5 HOH A 36 936 35 HOH HOH . 
E 5 HOH A 37 937 67 HOH HOH . 
E 5 HOH A 38 938 31 HOH HOH . 
E 5 HOH A 39 939 21 HOH HOH . 
E 5 HOH A 40 940 53 HOH HOH . 
E 5 HOH A 41 941 78 HOH HOH . 
E 5 HOH A 42 942 60 HOH HOH . 
E 5 HOH A 43 943 89 HOH HOH . 
E 5 HOH A 44 944 50 HOH HOH . 
E 5 HOH A 45 945 64 HOH HOH . 
E 5 HOH A 46 946 51 HOH HOH . 
E 5 HOH A 47 947 73 HOH HOH . 
E 5 HOH A 48 948 48 HOH HOH . 
E 5 HOH A 49 949 32 HOH HOH . 
E 5 HOH A 50 950 45 HOH HOH . 
E 5 HOH A 51 951 72 HOH HOH . 
E 5 HOH A 52 952 58 HOH HOH . 
E 5 HOH A 53 953 49 HOH HOH . 
E 5 HOH A 54 954 65 HOH HOH . 
E 5 HOH A 55 955 33 HOH HOH . 
E 5 HOH A 56 956 68 HOH HOH . 
E 5 HOH A 57 957 36 HOH HOH . 
E 5 HOH A 58 958 14 HOH HOH . 
E 5 HOH A 59 959 85 HOH HOH . 
E 5 HOH A 60 960 57 HOH HOH . 
E 5 HOH A 61 961 52 HOH HOH . 
E 5 HOH A 62 962 74 HOH HOH . 
E 5 HOH A 63 963 63 HOH HOH . 
E 5 HOH A 64 964 38 HOH HOH . 
E 5 HOH A 65 965 55 HOH HOH . 
E 5 HOH A 66 966 23 HOH HOH . 
E 5 HOH A 67 967 54 HOH HOH . 
E 5 HOH A 68 968 28 HOH HOH . 
E 5 HOH A 69 969 62 HOH HOH . 
E 5 HOH A 70 970 39 HOH HOH . 
E 5 HOH A 71 971 86 HOH HOH . 
E 5 HOH A 72 972 71 HOH HOH . 
E 5 HOH A 73 973 37 HOH HOH . 
E 5 HOH A 74 974 8 HOH HOH . 
E 5 HOH A 75 975 88 HOH HOH . 
E 5 HOH A 76 976 47 HOH HOH . 
E 5 HOH A 77 977 75 HOH HOH . 
E 5 HOH A 78 978 42 HOH HOH . 
E 5 HOH A 79 979 4 HOH HOH . 
E 5 HOH A 80 980 59 HOH HOH . 
E 5 HOH A 81 981 87 HOH HOH . 
E 5 HOH A 82 982 43 HOH HOH . 
E 5 HOH A 83 983 84 HOH HOH . 
E 5 HOH A 84 984 77 HOH HOH . 
E 5 HOH A 85 985 76 HOH HOH . 
F 5 HOH B 1 201 27 HOH HOH . 
F 5 HOH B 2 202 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 Q1W . . . D 4 46.585 -7.182 -26.916 1 40.86 ? C01 Q1W 802 A 1 
HETATM 2 C C02 Q1W . . . D 4 47.156 -8.373 -27.101 1 46.27 ? C02 Q1W 802 A 1 
HETATM 3 C C03 Q1W . . . D 4 48.55 -8.553 -26.413 1 33.14 ? C03 Q1W 802 A 1 
HETATM 4 C C04 Q1W . . . D 4 49.459 -9.671 -26.906 1 33.31 ? C04 Q1W 802 A 1 
HETATM 5 C C05 Q1W . . . D 4 50.943 -9.352 -26.962 1 38.85 ? C05 Q1W 802 A 1 
HETATM 6 C C06 Q1W . . . D 4 49.427 -10.777 -25.911 1 43.94 ? C06 Q1W 802 A 1 
HETATM 7 C C07 Q1W . . . D 4 48.987 -10.354 -28.186 1 47.98 ? C07 Q1W 802 A 1 
HETATM 8 O O01 Q1W . . . D 4 46.438 -9.159 -27.762 1 34.09 ? O01 Q1W 802 A 1 
HETATM 9 O O02 Q1W . . . D 4 45.485 -6.893 -27.595 1 43.69 -1 O02 Q1W 802 A 1 
HETATM 10 O O03 Q1W . . . D 4 47.006 -6.388 -26.123 1 33.69 ? O03 Q1W 802 A 1 
HETATM 11 O O04 Q1W . . . D 4 51.718 -9.233 -25.843 1 36.05 -1 O04 Q1W 802 A 1 
HETATM 12 O O05 Q1W . . . D 4 51.487 -9.306 -28.05 1 37.5 ? O05 Q1W 802 A 1 
HETATM 13 H H01 Q1W . . . D 4 48.386 -8.711 -25.47 1 39.77 ? H01 Q1W 802 A 1 
HETATM 14 H H02 Q1W . . . D 4 49.034 -7.72 -26.522 1 39.77 ? H02 Q1W 802 A 1 
HETATM 15 H H04 Q1W . . . D 4 50.267 -11.26 -25.937 1 52.72 ? H04 Q1W 802 A 1 
HETATM 16 H H06 Q1W . . . D 4 48.699 -11.382 -26.122 1 52.72 ? H06 Q1W 802 A 1 
HETATM 17 H H05 Q1W . . . D 4 49.294 -10.409 -25.023 1 52.72 ? H05 Q1W 802 A 1 
HETATM 18 H H07 Q1W . . . D 4 48.811 -9.683 -28.865 1 57.58 ? H07 Q1W 802 A 1 
HETATM 19 H H09 Q1W . . . D 4 48.175 -10.853 -28.007 1 57.58 ? H09 Q1W 802 A 1 
HETATM 20 H H08 Q1W . . . D 4 49.676 -10.96 -28.503 1 57.58 ? H08 Q1W 802 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           20 
#