data_6YZ0 # _model_server_result.job_id qcisyN0CsIGxav2_kshrnw _model_server_result.datetime_utc '2024-10-12 13:20:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6YZ0 # _exptl.entry_id 6YZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YZ0 _cell.length_a 110.328 _cell.length_b 110.328 _cell.length_c 207.876 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 110.328 110.328 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 110.328 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 110.328 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YZ0 _atom_sites.fract_transf_matrix[1][1] 0.009064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 304 2CV 2CV . F 4 12P A 1 305 305 12P 12P . G 5 CD0 A 1 306 401 CD0 DRG . H 6 HOH A 1 401 10 HOH HOH . H 6 HOH A 2 402 66 HOH HOH . H 6 HOH A 3 403 31 HOH HOH . H 6 HOH A 4 404 4 HOH HOH . H 6 HOH A 5 405 3 HOH HOH . H 6 HOH A 6 406 41 HOH HOH . H 6 HOH A 7 407 50 HOH HOH . H 6 HOH A 8 408 7 HOH HOH . H 6 HOH A 9 409 3 HOH HOH . H 6 HOH A 10 410 46 HOH HOH . H 6 HOH A 11 411 4 HOH HOH . H 6 HOH A 12 412 11 HOH HOH . H 6 HOH A 13 413 13 HOH HOH . H 6 HOH A 14 414 8 HOH HOH . H 6 HOH A 15 415 39 HOH HOH . H 6 HOH A 16 416 27 HOH HOH . H 6 HOH A 17 417 65 HOH HOH . H 6 HOH A 18 418 24 HOH HOH . H 6 HOH A 19 419 62 HOH HOH . H 6 HOH A 20 420 2 HOH HOH . H 6 HOH A 21 421 1 HOH HOH . H 6 HOH A 22 422 67 HOH HOH . H 6 HOH A 23 423 30 HOH HOH . H 6 HOH A 24 424 49 HOH HOH . H 6 HOH A 25 425 68 HOH HOH . H 6 HOH A 26 426 1 HOH HOH . H 6 HOH A 27 427 5 HOH HOH . H 6 HOH A 28 428 12 HOH HOH . H 6 HOH A 29 429 48 HOH HOH . H 6 HOH A 30 430 17 HOH HOH . H 6 HOH A 31 431 47 HOH HOH . H 6 HOH A 32 432 19 HOH HOH . H 6 HOH A 33 433 21 HOH HOH . H 6 HOH A 34 434 64 HOH HOH . H 6 HOH A 35 435 28 HOH HOH . H 6 HOH A 36 436 33 HOH HOH . H 6 HOH A 37 437 9 HOH HOH . H 6 HOH A 38 438 54 HOH HOH . H 6 HOH A 39 439 20 HOH HOH . H 6 HOH A 40 440 6 HOH HOH . H 6 HOH A 41 441 2 HOH HOH . H 6 HOH A 42 442 63 HOH HOH . H 6 HOH A 43 443 70 HOH HOH . H 6 HOH A 44 444 35 HOH HOH . H 6 HOH A 45 445 22 HOH HOH . H 6 HOH A 46 446 16 HOH HOH . H 6 HOH A 47 447 69 HOH HOH . H 6 HOH A 48 448 18 HOH HOH . H 6 HOH A 49 449 14 HOH HOH . H 6 HOH A 50 450 58 HOH HOH . H 6 HOH A 51 451 52 HOH HOH . H 6 HOH A 52 452 59 HOH HOH . H 6 HOH A 53 453 6 HOH HOH . H 6 HOH A 54 454 57 HOH HOH . H 6 HOH A 55 455 29 HOH HOH . H 6 HOH A 56 456 61 HOH HOH . H 6 HOH A 57 457 36 HOH HOH . H 6 HOH A 58 458 23 HOH HOH . H 6 HOH A 59 459 43 HOH HOH . H 6 HOH A 60 460 25 HOH HOH . H 6 HOH A 61 461 38 HOH HOH . H 6 HOH A 62 462 44 HOH HOH . H 6 HOH A 63 463 60 HOH HOH . H 6 HOH A 64 464 37 HOH HOH . H 6 HOH A 65 465 42 HOH HOH . H 6 HOH A 66 466 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 55.164 _atom_site.Cartn_y 55.163 _atom_site.Cartn_z 12.713 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 122.35 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #