data_6YZ0 # _model_server_result.job_id VmTsLrp0IKiKU7YZ5Q3XcA _model_server_result.datetime_utc '2024-10-12 13:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6YZ0 # _exptl.entry_id 6YZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.478 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-[(1R,2R,5S)-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]-5-pentylbenzene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YZ0 _cell.length_a 110.328 _cell.length_b 110.328 _cell.length_c 207.876 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 110.328 110.328 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 110.328 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 110.328 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H32 O2' _chem_comp.formula_weight 316.478 _chem_comp.id CD0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1R,2R,5S)-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]-5-pentylbenzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C11 CD0 sing 218 n n C16 C11 CD0 doub 219 n y C16 C15 CD0 sing 220 n y C11 C08 CD0 sing 221 n y C06 C09 CD0 sing 222 n n C06 C05 CD0 sing 223 n n C18 C15 CD0 sing 224 n n C18 C20 CD0 sing 225 n n C07 C09 CD0 sing 226 n n C07 C04 CD0 sing 227 n n C09 C13 CD0 sing 228 n n C15 C17 CD0 doub 229 n y C03 C05 CD0 sing 230 n n C03 C04 CD0 sing 231 n n C03 C10 CD0 sing 232 n n C08 C04 CD0 sing 233 n n C08 C12 CD0 doub 234 n y C19 C10 CD0 doub 235 n n C20 C21 CD0 sing 236 n n C10 C14 CD0 sing 237 n n C17 C12 CD0 sing 238 n y C12 O02 CD0 sing 239 n n C21 C22 CD0 sing 240 n n C22 C23 CD0 sing 241 n n C21 H1 CD0 sing 242 n n C21 H2 CD0 sing 243 n n C22 H3 CD0 sing 244 n n C22 H4 CD0 sing 245 n n C03 H5 CD0 sing 246 n n C04 H6 CD0 sing 247 n n C05 H7 CD0 sing 248 n n C05 H8 CD0 sing 249 n n C06 H9 CD0 sing 250 n n C06 H10 CD0 sing 251 n n C07 H11 CD0 sing 252 n n C07 H12 CD0 sing 253 n n C09 H13 CD0 sing 254 n n C13 H14 CD0 sing 255 n n C13 H15 CD0 sing 256 n n C13 H16 CD0 sing 257 n n C14 H17 CD0 sing 258 n n C14 H18 CD0 sing 259 n n C14 H19 CD0 sing 260 n n C16 H20 CD0 sing 261 n n C17 H21 CD0 sing 262 n n C18 H22 CD0 sing 263 n n C18 H23 CD0 sing 264 n n C19 H24 CD0 sing 265 n n C19 H25 CD0 sing 266 n n C20 H26 CD0 sing 267 n n C20 H27 CD0 sing 268 n n C23 H28 CD0 sing 269 n n C23 H29 CD0 sing 270 n n C23 H30 CD0 sing 271 n n O01 H31 CD0 sing 272 n n O02 H32 CD0 sing 273 n n # _atom_sites.entry_id 6YZ0 _atom_sites.fract_transf_matrix[1][1] 0.009064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 304 2CV 2CV . F 4 12P A 1 305 305 12P 12P . G 5 CD0 A 1 306 401 CD0 DRG . H 6 HOH A 1 401 10 HOH HOH . H 6 HOH A 2 402 66 HOH HOH . H 6 HOH A 3 403 31 HOH HOH . H 6 HOH A 4 404 4 HOH HOH . H 6 HOH A 5 405 3 HOH HOH . H 6 HOH A 6 406 41 HOH HOH . H 6 HOH A 7 407 50 HOH HOH . H 6 HOH A 8 408 7 HOH HOH . H 6 HOH A 9 409 3 HOH HOH . H 6 HOH A 10 410 46 HOH HOH . H 6 HOH A 11 411 4 HOH HOH . H 6 HOH A 12 412 11 HOH HOH . H 6 HOH A 13 413 13 HOH HOH . H 6 HOH A 14 414 8 HOH HOH . H 6 HOH A 15 415 39 HOH HOH . H 6 HOH A 16 416 27 HOH HOH . H 6 HOH A 17 417 65 HOH HOH . H 6 HOH A 18 418 24 HOH HOH . H 6 HOH A 19 419 62 HOH HOH . H 6 HOH A 20 420 2 HOH HOH . H 6 HOH A 21 421 1 HOH HOH . H 6 HOH A 22 422 67 HOH HOH . H 6 HOH A 23 423 30 HOH HOH . H 6 HOH A 24 424 49 HOH HOH . H 6 HOH A 25 425 68 HOH HOH . H 6 HOH A 26 426 1 HOH HOH . H 6 HOH A 27 427 5 HOH HOH . H 6 HOH A 28 428 12 HOH HOH . H 6 HOH A 29 429 48 HOH HOH . H 6 HOH A 30 430 17 HOH HOH . H 6 HOH A 31 431 47 HOH HOH . H 6 HOH A 32 432 19 HOH HOH . H 6 HOH A 33 433 21 HOH HOH . H 6 HOH A 34 434 64 HOH HOH . H 6 HOH A 35 435 28 HOH HOH . H 6 HOH A 36 436 33 HOH HOH . H 6 HOH A 37 437 9 HOH HOH . H 6 HOH A 38 438 54 HOH HOH . H 6 HOH A 39 439 20 HOH HOH . H 6 HOH A 40 440 6 HOH HOH . H 6 HOH A 41 441 2 HOH HOH . H 6 HOH A 42 442 63 HOH HOH . H 6 HOH A 43 443 70 HOH HOH . H 6 HOH A 44 444 35 HOH HOH . H 6 HOH A 45 445 22 HOH HOH . H 6 HOH A 46 446 16 HOH HOH . H 6 HOH A 47 447 69 HOH HOH . H 6 HOH A 48 448 18 HOH HOH . H 6 HOH A 49 449 14 HOH HOH . H 6 HOH A 50 450 58 HOH HOH . H 6 HOH A 51 451 52 HOH HOH . H 6 HOH A 52 452 59 HOH HOH . H 6 HOH A 53 453 6 HOH HOH . H 6 HOH A 54 454 57 HOH HOH . H 6 HOH A 55 455 29 HOH HOH . H 6 HOH A 56 456 61 HOH HOH . H 6 HOH A 57 457 36 HOH HOH . H 6 HOH A 58 458 23 HOH HOH . H 6 HOH A 59 459 43 HOH HOH . H 6 HOH A 60 460 25 HOH HOH . H 6 HOH A 61 461 38 HOH HOH . H 6 HOH A 62 462 44 HOH HOH . H 6 HOH A 63 463 60 HOH HOH . H 6 HOH A 64 464 37 HOH HOH . H 6 HOH A 65 465 42 HOH HOH . H 6 HOH A 66 466 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 CD0 . . . G 5 61.03 53.738 25.04 0.75 108.21 ? C11 CD0 306 A 1 HETATM 2 C C12 CD0 . . . G 5 61.399 51.953 23.468 0.75 108.55 ? C12 CD0 306 A 1 HETATM 3 C C21 CD0 . . . G 5 66.928 53.816 24.427 0.75 106.93 ? C21 CD0 306 A 1 HETATM 4 C C22 CD0 . . . G 5 67.792 53.211 25.507 0.75 106.75 ? C22 CD0 306 A 1 HETATM 5 C C03 CD0 . . . G 5 58.071 53.147 24.29 0.75 108.38 ? C03 CD0 306 A 1 HETATM 6 C C04 CD0 . . . G 5 59.139 52.071 24.604 0.75 108.33 ? C04 CD0 306 A 1 HETATM 7 C C05 CD0 . . . G 5 57.059 53.302 25.432 0.75 108.19 ? C05 CD0 306 A 1 HETATM 8 C C06 CD0 . . . G 5 56.57 51.953 25.94 0.75 108.12 ? C06 CD0 306 A 1 HETATM 9 C C07 CD0 . . . G 5 58.913 51.224 25.827 0.75 108.03 ? C07 CD0 306 A 1 HETATM 10 C C08 CD0 . . . G 5 60.571 52.566 24.417 0.75 108.34 ? C08 CD0 306 A 1 HETATM 11 C C09 CD0 . . . G 5 57.68 51.034 26.289 0.75 107.9 ? C09 CD0 306 A 1 HETATM 12 C C10 CD0 . . . G 5 57.441 53.071 22.908 0.75 108.32 ? C10 CD0 306 A 1 HETATM 13 C C13 CD0 . . . G 5 57.324 49.914 27.219 0.75 107.91 ? C13 CD0 306 A 1 HETATM 14 C C14 CD0 . . . G 5 58.35 52.843 21.772 0.75 108.26 ? C14 CD0 306 A 1 HETATM 15 C C15 CD0 . . . G 5 63.102 53.618 23.82 0.75 107.83 ? C15 CD0 306 A 1 HETATM 16 C C16 CD0 . . . G 5 62.298 54.227 24.772 0.75 108.15 ? C16 CD0 306 A 1 HETATM 17 C C17 CD0 . . . G 5 62.659 52.462 23.194 0.75 108.33 ? C17 CD0 306 A 1 HETATM 18 C C18 CD0 . . . G 5 64.511 54.107 23.597 0.75 107.28 ? C18 CD0 306 A 1 HETATM 19 C C19 CD0 . . . G 5 56.133 53.259 22.7 0.75 108.46 ? C19 CD0 306 A 1 HETATM 20 C C20 CD0 . . . G 5 65.47 53.402 24.535 0.75 107.21 ? C20 CD0 306 A 1 HETATM 21 C C23 CD0 . . . G 5 67.901 51.705 25.461 0.75 106.65 ? C23 CD0 306 A 1 HETATM 22 O O01 CD0 . . . G 5 60.302 54.371 26.012 0.75 107.97 ? O01 CD0 306 A 1 HETATM 23 O O02 CD0 . . . G 5 60.977 50.824 22.819 0.75 108.86 ? O02 CD0 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #