data_6YZ2 # _model_server_result.job_id IJ7abqyQb8FxCYjopP676Q _model_server_result.datetime_utc '2024-11-25 04:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6YZ2 # _exptl.entry_id 6YZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YZ2 _cell.length_a 108.94 _cell.length_b 108.94 _cell.length_c 209.367 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 108.94 108.94 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 108.94 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 108.94 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YZ2 _atom_sites.fract_transf_matrix[1][1] 0.009179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 601 2CV 2CV . F 4 12P A 1 305 701 12P 12P . G 4 12P A 1 306 1001 12P 12P . H 3 2CV A 1 307 1101 2CV 2CV . I 4 12P A 1 308 1301 12P 12P . J 5 HOH A 1 401 78 HOH HOH . J 5 HOH A 2 402 38 HOH HOH . J 5 HOH A 3 403 96 HOH HOH . J 5 HOH A 4 404 1 HOH HOH . J 5 HOH A 5 405 31 HOH HOH . J 5 HOH A 6 406 43 HOH HOH . J 5 HOH A 7 407 106 HOH HOH . J 5 HOH A 8 408 54 HOH HOH . J 5 HOH A 9 409 62 HOH HOH . J 5 HOH A 10 410 50 HOH HOH . J 5 HOH A 11 411 32 HOH HOH . J 5 HOH A 12 412 51 HOH HOH . J 5 HOH A 13 413 18 HOH HOH . J 5 HOH A 14 414 79 HOH HOH . J 5 HOH A 15 415 44 HOH HOH . J 5 HOH A 16 416 6 HOH HOH . J 5 HOH A 17 417 4 HOH HOH . J 5 HOH A 18 418 77 HOH HOH . J 5 HOH A 19 419 2 HOH HOH . J 5 HOH A 20 420 58 HOH HOH . J 5 HOH A 21 421 13 HOH HOH . J 5 HOH A 22 422 11 HOH HOH . J 5 HOH A 23 423 5 HOH HOH . J 5 HOH A 24 424 3 HOH HOH . J 5 HOH A 25 425 117 HOH HOH . J 5 HOH A 26 426 10 HOH HOH . J 5 HOH A 27 427 15 HOH HOH . J 5 HOH A 28 428 49 HOH HOH . J 5 HOH A 29 429 53 HOH HOH . J 5 HOH A 30 430 99 HOH HOH . J 5 HOH A 31 431 76 HOH HOH . J 5 HOH A 32 432 29 HOH HOH . J 5 HOH A 33 433 75 HOH HOH . J 5 HOH A 34 434 59 HOH HOH . J 5 HOH A 35 435 102 HOH HOH . J 5 HOH A 36 436 70 HOH HOH . J 5 HOH A 37 437 52 HOH HOH . J 5 HOH A 38 438 118 HOH HOH . J 5 HOH A 39 439 39 HOH HOH . J 5 HOH A 40 440 66 HOH HOH . J 5 HOH A 41 441 80 HOH HOH . J 5 HOH A 42 442 22 HOH HOH . J 5 HOH A 43 443 81 HOH HOH . J 5 HOH A 44 444 120 HOH HOH . J 5 HOH A 45 445 110 HOH HOH . J 5 HOH A 46 446 57 HOH HOH . J 5 HOH A 47 447 36 HOH HOH . J 5 HOH A 48 448 101 HOH HOH . J 5 HOH A 49 449 111 HOH HOH . J 5 HOH A 50 450 7 HOH HOH . J 5 HOH A 51 451 87 HOH HOH . J 5 HOH A 52 452 82 HOH HOH . J 5 HOH A 53 453 23 HOH HOH . J 5 HOH A 54 454 112 HOH HOH . J 5 HOH A 55 455 12 HOH HOH . J 5 HOH A 56 456 64 HOH HOH . J 5 HOH A 57 457 71 HOH HOH . J 5 HOH A 58 458 60 HOH HOH . J 5 HOH A 59 459 88 HOH HOH . J 5 HOH A 60 460 74 HOH HOH . J 5 HOH A 61 461 17 HOH HOH . J 5 HOH A 62 462 103 HOH HOH . J 5 HOH A 63 463 98 HOH HOH . J 5 HOH A 64 464 26 HOH HOH . J 5 HOH A 65 465 19 HOH HOH . J 5 HOH A 66 466 90 HOH HOH . J 5 HOH A 67 467 105 HOH HOH . J 5 HOH A 68 468 83 HOH HOH . J 5 HOH A 69 469 34 HOH HOH . J 5 HOH A 70 470 121 HOH HOH . J 5 HOH A 71 471 107 HOH HOH . J 5 HOH A 72 472 95 HOH HOH . J 5 HOH A 73 473 68 HOH HOH . J 5 HOH A 74 474 9 HOH HOH . J 5 HOH A 75 475 28 HOH HOH . J 5 HOH A 76 476 14 HOH HOH . J 5 HOH A 77 477 16 HOH HOH . J 5 HOH A 78 478 93 HOH HOH . J 5 HOH A 79 479 61 HOH HOH . J 5 HOH A 80 480 65 HOH HOH . J 5 HOH A 81 481 92 HOH HOH . J 5 HOH A 82 482 8 HOH HOH . J 5 HOH A 83 483 46 HOH HOH . J 5 HOH A 84 484 30 HOH HOH . J 5 HOH A 85 485 91 HOH HOH . J 5 HOH A 86 486 21 HOH HOH . J 5 HOH A 87 487 94 HOH HOH . J 5 HOH A 88 488 113 HOH HOH . J 5 HOH A 89 489 67 HOH HOH . J 5 HOH A 90 490 108 HOH HOH . J 5 HOH A 91 491 63 HOH HOH . J 5 HOH A 92 492 100 HOH HOH . J 5 HOH A 93 493 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 54.47 _atom_site.Cartn_y 54.471 _atom_site.Cartn_z 9.908 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 76.85 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #