data_6YZ2 # _model_server_result.job_id gub26Jy0kaOpxSGeImKJnQ _model_server_result.datetime_utc '2024-10-12 11:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6YZ2 # _exptl.entry_id 6YZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YZ2 _cell.length_a 108.94 _cell.length_b 108.94 _cell.length_c 209.367 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 108.94 108.94 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 108.94 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 108.94 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 87 n n C9 C1 2CV sing 88 n n C12 C15 2CV sing 89 n n C15 C18 2CV sing 90 n n C18 C21 2CV sing 91 n n C21 C24 2CV sing 92 n n C24 C27 2CV sing 93 n n C27 C30 2CV sing 94 n n C30 N33 2CV sing 95 n n C30 O34 2CV doub 96 n n N33 C35 2CV sing 97 n n N33 C36 2CV sing 98 n n C35 C60 2CV sing 99 n n C36 C37 2CV sing 100 n n C37 C40 2CV sing 101 n n C37 O47 2CV sing 102 n n C40 C41 2CV sing 103 n n C40 O49 2CV sing 104 n n C41 C42 2CV sing 105 n n C41 O51 2CV sing 106 n n C42 C43 2CV sing 107 n n C42 O53 2CV sing 108 n n C43 O44 2CV sing 109 n n C60 O63 2CV sing 110 n n C1 C0 2CV sing 111 n n C9 H91C 2CV sing 112 n n C9 H92C 2CV sing 113 n n C12 H121 2CV sing 114 n n C12 H122 2CV sing 115 n n C1 H11C 2CV sing 116 n n C1 H12C 2CV sing 117 n n C15 H151 2CV sing 118 n n C15 H152 2CV sing 119 n n C18 H181 2CV sing 120 n n C18 H182 2CV sing 121 n n C21 H211 2CV sing 122 n n C21 H212 2CV sing 123 n n C24 H241 2CV sing 124 n n C24 H242 2CV sing 125 n n C27 H271 2CV sing 126 n n C27 H272 2CV sing 127 n n C35 H351 2CV sing 128 n n C35 H352 2CV sing 129 n n C36 H361 2CV sing 130 n n C36 H362 2CV sing 131 n n C60 H601 2CV sing 132 n n C60 H602 2CV sing 133 n n C37 H37 2CV sing 134 n n C40 H40 2CV sing 135 n n O47 H47 2CV sing 136 n n C41 H41 2CV sing 137 n n O49 H49 2CV sing 138 n n C42 H42 2CV sing 139 n n O51 H51 2CV sing 140 n n C43 H431 2CV sing 141 n n C43 H432 2CV sing 142 n n O53 H53 2CV sing 143 n n O44 H44 2CV sing 144 n n O63 H63 2CV sing 145 n n C0 H01C 2CV sing 146 n n C0 H02C 2CV sing 147 n n C0 H03C 2CV sing 148 n n # _atom_sites.entry_id 6YZ2 _atom_sites.fract_transf_matrix[1][1] 0.009179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 601 2CV 2CV . F 4 12P A 1 305 701 12P 12P . G 4 12P A 1 306 1001 12P 12P . H 3 2CV A 1 307 1101 2CV 2CV . I 4 12P A 1 308 1301 12P 12P . J 5 HOH A 1 401 78 HOH HOH . J 5 HOH A 2 402 38 HOH HOH . J 5 HOH A 3 403 96 HOH HOH . J 5 HOH A 4 404 1 HOH HOH . J 5 HOH A 5 405 31 HOH HOH . J 5 HOH A 6 406 43 HOH HOH . J 5 HOH A 7 407 106 HOH HOH . J 5 HOH A 8 408 54 HOH HOH . J 5 HOH A 9 409 62 HOH HOH . J 5 HOH A 10 410 50 HOH HOH . J 5 HOH A 11 411 32 HOH HOH . J 5 HOH A 12 412 51 HOH HOH . J 5 HOH A 13 413 18 HOH HOH . J 5 HOH A 14 414 79 HOH HOH . J 5 HOH A 15 415 44 HOH HOH . J 5 HOH A 16 416 6 HOH HOH . J 5 HOH A 17 417 4 HOH HOH . J 5 HOH A 18 418 77 HOH HOH . J 5 HOH A 19 419 2 HOH HOH . J 5 HOH A 20 420 58 HOH HOH . J 5 HOH A 21 421 13 HOH HOH . J 5 HOH A 22 422 11 HOH HOH . J 5 HOH A 23 423 5 HOH HOH . J 5 HOH A 24 424 3 HOH HOH . J 5 HOH A 25 425 117 HOH HOH . J 5 HOH A 26 426 10 HOH HOH . J 5 HOH A 27 427 15 HOH HOH . J 5 HOH A 28 428 49 HOH HOH . J 5 HOH A 29 429 53 HOH HOH . J 5 HOH A 30 430 99 HOH HOH . J 5 HOH A 31 431 76 HOH HOH . J 5 HOH A 32 432 29 HOH HOH . J 5 HOH A 33 433 75 HOH HOH . J 5 HOH A 34 434 59 HOH HOH . J 5 HOH A 35 435 102 HOH HOH . J 5 HOH A 36 436 70 HOH HOH . J 5 HOH A 37 437 52 HOH HOH . J 5 HOH A 38 438 118 HOH HOH . J 5 HOH A 39 439 39 HOH HOH . J 5 HOH A 40 440 66 HOH HOH . J 5 HOH A 41 441 80 HOH HOH . J 5 HOH A 42 442 22 HOH HOH . J 5 HOH A 43 443 81 HOH HOH . J 5 HOH A 44 444 120 HOH HOH . J 5 HOH A 45 445 110 HOH HOH . J 5 HOH A 46 446 57 HOH HOH . J 5 HOH A 47 447 36 HOH HOH . J 5 HOH A 48 448 101 HOH HOH . J 5 HOH A 49 449 111 HOH HOH . J 5 HOH A 50 450 7 HOH HOH . J 5 HOH A 51 451 87 HOH HOH . J 5 HOH A 52 452 82 HOH HOH . J 5 HOH A 53 453 23 HOH HOH . J 5 HOH A 54 454 112 HOH HOH . J 5 HOH A 55 455 12 HOH HOH . J 5 HOH A 56 456 64 HOH HOH . J 5 HOH A 57 457 71 HOH HOH . J 5 HOH A 58 458 60 HOH HOH . J 5 HOH A 59 459 88 HOH HOH . J 5 HOH A 60 460 74 HOH HOH . J 5 HOH A 61 461 17 HOH HOH . J 5 HOH A 62 462 103 HOH HOH . J 5 HOH A 63 463 98 HOH HOH . J 5 HOH A 64 464 26 HOH HOH . J 5 HOH A 65 465 19 HOH HOH . J 5 HOH A 66 466 90 HOH HOH . J 5 HOH A 67 467 105 HOH HOH . J 5 HOH A 68 468 83 HOH HOH . J 5 HOH A 69 469 34 HOH HOH . J 5 HOH A 70 470 121 HOH HOH . J 5 HOH A 71 471 107 HOH HOH . J 5 HOH A 72 472 95 HOH HOH . J 5 HOH A 73 473 68 HOH HOH . J 5 HOH A 74 474 9 HOH HOH . J 5 HOH A 75 475 28 HOH HOH . J 5 HOH A 76 476 14 HOH HOH . J 5 HOH A 77 477 16 HOH HOH . J 5 HOH A 78 478 93 HOH HOH . J 5 HOH A 79 479 61 HOH HOH . J 5 HOH A 80 480 65 HOH HOH . J 5 HOH A 81 481 92 HOH HOH . J 5 HOH A 82 482 8 HOH HOH . J 5 HOH A 83 483 46 HOH HOH . J 5 HOH A 84 484 30 HOH HOH . J 5 HOH A 85 485 91 HOH HOH . J 5 HOH A 86 486 21 HOH HOH . J 5 HOH A 87 487 94 HOH HOH . J 5 HOH A 88 488 113 HOH HOH . J 5 HOH A 89 489 67 HOH HOH . J 5 HOH A 90 490 108 HOH HOH . J 5 HOH A 91 491 63 HOH HOH . J 5 HOH A 92 492 100 HOH HOH . J 5 HOH A 93 493 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . E 3 72.199 49.14 19.122 1 78.55 ? C9 2CV 304 A 1 HETATM 2 C C12 2CV . . . E 3 71.892 49.87 17.84 1 79.06 ? C12 2CV 304 A 1 HETATM 3 C C15 2CV . . . E 3 73.065 50.116 16.922 1 79.87 ? C15 2CV 304 A 1 HETATM 4 C C18 2CV . . . E 3 73.521 48.891 16.206 1 80.84 ? C18 2CV 304 A 1 HETATM 5 C C21 2CV . . . E 3 74.027 49.127 14.817 1 82 ? C21 2CV 304 A 1 HETATM 6 C C24 2CV . . . E 3 75.355 49.803 14.76 1 83.38 ? C24 2CV 304 A 1 HETATM 7 C C27 2CV . . . E 3 76.17 49.52 13.488 1 84.76 ? C27 2CV 304 A 1 HETATM 8 C C30 2CV . . . E 3 75.56 50.089 12.226 1 86.18 ? C30 2CV 304 A 1 HETATM 9 N N33 2CV . . . E 3 76.304 50.055 11.096 1 87.49 ? N33 2CV 304 A 1 HETATM 10 O O34 2CV . . . E 3 74.445 50.59 12.239 1 86.31 ? O34 2CV 304 A 1 HETATM 11 C C35 2CV . . . E 3 77.699 49.584 11.035 1 88.01 ? C35 2CV 304 A 1 HETATM 12 C C36 2CV . . . E 3 75.735 50.481 9.816 1 87.99 ? C36 2CV 304 A 1 HETATM 13 C C37 2CV . . . E 3 74.84 49.483 9.081 1 88.31 ? C37 2CV 304 A 1 HETATM 14 C C40 2CV . . . E 3 73.369 49.466 9.505 1 87.77 ? C40 2CV 304 A 1 HETATM 15 C C41 2CV . . . E 3 72.407 49.287 8.329 1 87.42 ? C41 2CV 304 A 1 HETATM 16 C C42 2CV . . . E 3 72.831 50.005 7.046 1 86.73 ? C42 2CV 304 A 1 HETATM 17 C C43 2CV . . . E 3 72.623 51.525 7.029 1 86.25 ? C43 2CV 304 A 1 HETATM 18 O O44 2CV . . . E 3 72.789 52.077 5.726 1 85.76 ? O44 2CV 304 A 1 HETATM 19 O O47 2CV . . . E 3 75.41 48.173 9.137 1 88.9 ? O47 2CV 304 A 1 HETATM 20 O O49 2CV . . . E 3 73.013 50.615 10.271 1 87.72 ? O49 2CV 304 A 1 HETATM 21 O O51 2CV . . . E 3 71.094 49.69 8.699 1 87.62 ? O51 2CV 304 A 1 HETATM 22 O O53 2CV . . . E 3 72.096 49.428 5.966 1 86.9 ? O53 2CV 304 A 1 HETATM 23 C C60 2CV . . . E 3 78.676 50.65 10.574 1 88.45 ? C60 2CV 304 A 1 HETATM 24 O O63 2CV . . . E 3 78.885 50.607 9.162 1 88.67 ? O63 2CV 304 A 1 HETATM 25 C C1 2CV . . . E 3 71.054 49.219 20.117 1 78.19 ? C1 2CV 304 A 1 HETATM 26 C C0 2CV . . . E 3 71.239 48.385 21.347 1 78.27 ? C0 2CV 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #