data_6YZ4 # _model_server_result.job_id qMpQNMzRe2wjUEVFARrEGg _model_server_result.datetime_utc '2024-11-24 06:44:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6YZ4 # _exptl.entry_id 6YZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YZ4 _cell.length_a 53.51 _cell.length_b 74.67 _cell.length_c 87.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 153 n n C1 C2 EDO sing 154 n n C1 H11 EDO sing 155 n n C1 H12 EDO sing 156 n n O1 HO1 EDO sing 157 n n C2 O2 EDO sing 158 n n C2 H21 EDO sing 159 n n C2 H22 EDO sing 160 n n O2 HO2 EDO sing 161 n n # _atom_sites.entry_id 6YZ4 _atom_sites.fract_transf_matrix[1][1] 0.018688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 401 EDO EDO . C 2 EDO A 1 502 403 EDO EDO . D 2 EDO A 1 503 405 EDO EDO . E 2 EDO A 1 504 406 EDO EDO . F 2 EDO A 1 505 407 EDO EDO . G 2 EDO A 1 506 410 EDO EDO . H 2 EDO A 1 507 411 EDO EDO . I 2 EDO A 1 508 412 EDO EDO . J 2 EDO A 1 509 413 EDO EDO . K 3 DMS A 1 510 420 DMS DMS . L 3 DMS A 1 511 421 DMS DMS . M 3 DMS A 1 512 422 DMS DMS . N 3 DMS A 1 513 423 DMS DMS . O 4 1E8 A 1 514 1 1E8 RRR . P 5 HOH A 1 601 282 HOH HOH . P 5 HOH A 2 602 297 HOH HOH . P 5 HOH A 3 603 311 HOH HOH . P 5 HOH A 4 604 219 HOH HOH . P 5 HOH A 5 605 169 HOH HOH . P 5 HOH A 6 606 310 HOH HOH . P 5 HOH A 7 607 277 HOH HOH . P 5 HOH A 8 608 350 HOH HOH . P 5 HOH A 9 609 330 HOH HOH . P 5 HOH A 10 610 267 HOH HOH . P 5 HOH A 11 611 290 HOH HOH . P 5 HOH A 12 612 158 HOH HOH . P 5 HOH A 13 613 84 HOH HOH . P 5 HOH A 14 614 154 HOH HOH . P 5 HOH A 15 615 184 HOH HOH . P 5 HOH A 16 616 315 HOH HOH . P 5 HOH A 17 617 271 HOH HOH . P 5 HOH A 18 618 145 HOH HOH . P 5 HOH A 19 619 123 HOH HOH . P 5 HOH A 20 620 31 HOH HOH . P 5 HOH A 21 621 336 HOH HOH . P 5 HOH A 22 622 43 HOH HOH . P 5 HOH A 23 623 96 HOH HOH . P 5 HOH A 24 624 318 HOH HOH . P 5 HOH A 25 625 116 HOH HOH . P 5 HOH A 26 626 93 HOH HOH . P 5 HOH A 27 627 108 HOH HOH . P 5 HOH A 28 628 198 HOH HOH . P 5 HOH A 29 629 160 HOH HOH . P 5 HOH A 30 630 231 HOH HOH . P 5 HOH A 31 631 115 HOH HOH . P 5 HOH A 32 632 307 HOH HOH . P 5 HOH A 33 633 16 HOH HOH . P 5 HOH A 34 634 313 HOH HOH . P 5 HOH A 35 635 202 HOH HOH . P 5 HOH A 36 636 140 HOH HOH . P 5 HOH A 37 637 147 HOH HOH . P 5 HOH A 38 638 341 HOH HOH . P 5 HOH A 39 639 57 HOH HOH . P 5 HOH A 40 640 321 HOH HOH . P 5 HOH A 41 641 34 HOH HOH . P 5 HOH A 42 642 133 HOH HOH . P 5 HOH A 43 643 33 HOH HOH . P 5 HOH A 44 644 89 HOH HOH . P 5 HOH A 45 645 281 HOH HOH . P 5 HOH A 46 646 106 HOH HOH . P 5 HOH A 47 647 132 HOH HOH . P 5 HOH A 48 648 210 HOH HOH . P 5 HOH A 49 649 67 HOH HOH . P 5 HOH A 50 650 232 HOH HOH . P 5 HOH A 51 651 63 HOH HOH . P 5 HOH A 52 652 170 HOH HOH . P 5 HOH A 53 653 201 HOH HOH . P 5 HOH A 54 654 118 HOH HOH . P 5 HOH A 55 655 130 HOH HOH . P 5 HOH A 56 656 6 HOH HOH . P 5 HOH A 57 657 216 HOH HOH . P 5 HOH A 58 658 47 HOH HOH . P 5 HOH A 59 659 32 HOH HOH . P 5 HOH A 60 660 87 HOH HOH . P 5 HOH A 61 661 42 HOH HOH . P 5 HOH A 62 662 37 HOH HOH . P 5 HOH A 63 663 13 HOH HOH . P 5 HOH A 64 664 209 HOH HOH . P 5 HOH A 65 665 10 HOH HOH . P 5 HOH A 66 666 135 HOH HOH . P 5 HOH A 67 667 273 HOH HOH . P 5 HOH A 68 668 208 HOH HOH . P 5 HOH A 69 669 122 HOH HOH . P 5 HOH A 70 670 46 HOH HOH . P 5 HOH A 71 671 120 HOH HOH . P 5 HOH A 72 672 258 HOH HOH . P 5 HOH A 73 673 167 HOH HOH . P 5 HOH A 74 674 39 HOH HOH . P 5 HOH A 75 675 12 HOH HOH . P 5 HOH A 76 676 161 HOH HOH . P 5 HOH A 77 677 28 HOH HOH . P 5 HOH A 78 678 91 HOH HOH . P 5 HOH A 79 679 71 HOH HOH . P 5 HOH A 80 680 18 HOH HOH . P 5 HOH A 81 681 78 HOH HOH . P 5 HOH A 82 682 263 HOH HOH . P 5 HOH A 83 683 322 HOH HOH . P 5 HOH A 84 684 25 HOH HOH . P 5 HOH A 85 685 29 HOH HOH . P 5 HOH A 86 686 176 HOH HOH . P 5 HOH A 87 687 35 HOH HOH . P 5 HOH A 88 688 119 HOH HOH . P 5 HOH A 89 689 207 HOH HOH . P 5 HOH A 90 690 127 HOH HOH . P 5 HOH A 91 691 64 HOH HOH . P 5 HOH A 92 692 61 HOH HOH . P 5 HOH A 93 693 139 HOH HOH . P 5 HOH A 94 694 112 HOH HOH . P 5 HOH A 95 695 266 HOH HOH . P 5 HOH A 96 696 53 HOH HOH . P 5 HOH A 97 697 163 HOH HOH . P 5 HOH A 98 698 205 HOH HOH . P 5 HOH A 99 699 107 HOH HOH . P 5 HOH A 100 700 66 HOH HOH . P 5 HOH A 101 701 129 HOH HOH . P 5 HOH A 102 702 56 HOH HOH . P 5 HOH A 103 703 41 HOH HOH . P 5 HOH A 104 704 150 HOH HOH . P 5 HOH A 105 705 262 HOH HOH . P 5 HOH A 106 706 148 HOH HOH . P 5 HOH A 107 707 138 HOH HOH . P 5 HOH A 108 708 85 HOH HOH . P 5 HOH A 109 709 214 HOH HOH . P 5 HOH A 110 710 261 HOH HOH . P 5 HOH A 111 711 157 HOH HOH . P 5 HOH A 112 712 30 HOH HOH . P 5 HOH A 113 713 24 HOH HOH . P 5 HOH A 114 714 26 HOH HOH . P 5 HOH A 115 715 17 HOH HOH . P 5 HOH A 116 716 62 HOH HOH . P 5 HOH A 117 717 90 HOH HOH . P 5 HOH A 118 718 166 HOH HOH . P 5 HOH A 119 719 183 HOH HOH . P 5 HOH A 120 720 105 HOH HOH . P 5 HOH A 121 721 278 HOH HOH . P 5 HOH A 122 722 230 HOH HOH . P 5 HOH A 123 723 86 HOH HOH . P 5 HOH A 124 724 265 HOH HOH . P 5 HOH A 125 725 59 HOH HOH . P 5 HOH A 126 726 285 HOH HOH . P 5 HOH A 127 727 186 HOH HOH . P 5 HOH A 128 728 48 HOH HOH . P 5 HOH A 129 729 325 HOH HOH . P 5 HOH A 130 730 110 HOH HOH . P 5 HOH A 131 731 88 HOH HOH . P 5 HOH A 132 732 185 HOH HOH . P 5 HOH A 133 733 109 HOH HOH . P 5 HOH A 134 734 5 HOH HOH . P 5 HOH A 135 735 344 HOH HOH . P 5 HOH A 136 736 226 HOH HOH . P 5 HOH A 137 737 177 HOH HOH . P 5 HOH A 138 738 20 HOH HOH . P 5 HOH A 139 739 358 HOH HOH . P 5 HOH A 140 740 51 HOH HOH . P 5 HOH A 141 741 194 HOH HOH . P 5 HOH A 142 742 131 HOH HOH . P 5 HOH A 143 743 49 HOH HOH . P 5 HOH A 144 744 220 HOH HOH . P 5 HOH A 145 745 11 HOH HOH . P 5 HOH A 146 746 4 HOH HOH . P 5 HOH A 147 747 44 HOH HOH . P 5 HOH A 148 748 38 HOH HOH . P 5 HOH A 149 749 104 HOH HOH . P 5 HOH A 150 750 159 HOH HOH . P 5 HOH A 151 751 334 HOH HOH . P 5 HOH A 152 752 9 HOH HOH . P 5 HOH A 153 753 355 HOH HOH . P 5 HOH A 154 754 79 HOH HOH . P 5 HOH A 155 755 134 HOH HOH . P 5 HOH A 156 756 302 HOH HOH . P 5 HOH A 157 757 15 HOH HOH . P 5 HOH A 158 758 72 HOH HOH . P 5 HOH A 159 759 359 HOH HOH . P 5 HOH A 160 760 270 HOH HOH . P 5 HOH A 161 761 324 HOH HOH . P 5 HOH A 162 762 146 HOH HOH . P 5 HOH A 163 763 181 HOH HOH . P 5 HOH A 164 764 117 HOH HOH . P 5 HOH A 165 765 332 HOH HOH . P 5 HOH A 166 766 52 HOH HOH . P 5 HOH A 167 767 68 HOH HOH . P 5 HOH A 168 768 239 HOH HOH . P 5 HOH A 169 769 164 HOH HOH . P 5 HOH A 170 770 73 HOH HOH . P 5 HOH A 171 771 188 HOH HOH . P 5 HOH A 172 772 346 HOH HOH . P 5 HOH A 173 773 40 HOH HOH . P 5 HOH A 174 774 296 HOH HOH . P 5 HOH A 175 775 357 HOH HOH . P 5 HOH A 176 776 326 HOH HOH . P 5 HOH A 177 777 149 HOH HOH . P 5 HOH A 178 778 347 HOH HOH . P 5 HOH A 179 779 351 HOH HOH . P 5 HOH A 180 780 82 HOH HOH . P 5 HOH A 181 781 156 HOH HOH . P 5 HOH A 182 782 121 HOH HOH . P 5 HOH A 183 783 80 HOH HOH . P 5 HOH A 184 784 102 HOH HOH . P 5 HOH A 185 785 60 HOH HOH . P 5 HOH A 186 786 300 HOH HOH . P 5 HOH A 187 787 331 HOH HOH . P 5 HOH A 188 788 74 HOH HOH . P 5 HOH A 189 789 27 HOH HOH . P 5 HOH A 190 790 360 HOH HOH . P 5 HOH A 191 791 274 HOH HOH . P 5 HOH A 192 792 97 HOH HOH . P 5 HOH A 193 793 317 HOH HOH . P 5 HOH A 194 794 8 HOH HOH . P 5 HOH A 195 795 36 HOH HOH . P 5 HOH A 196 796 348 HOH HOH . P 5 HOH A 197 797 128 HOH HOH . P 5 HOH A 198 798 312 HOH HOH . P 5 HOH A 199 799 2 HOH HOH . P 5 HOH A 200 800 125 HOH HOH . P 5 HOH A 201 801 193 HOH HOH . P 5 HOH A 202 802 76 HOH HOH . P 5 HOH A 203 803 200 HOH HOH . P 5 HOH A 204 804 165 HOH HOH . P 5 HOH A 205 805 95 HOH HOH . P 5 HOH A 206 806 259 HOH HOH . P 5 HOH A 207 807 58 HOH HOH . P 5 HOH A 208 808 136 HOH HOH . P 5 HOH A 209 809 22 HOH HOH . P 5 HOH A 210 810 253 HOH HOH . P 5 HOH A 211 811 229 HOH HOH . P 5 HOH A 212 812 287 HOH HOH . P 5 HOH A 213 813 283 HOH HOH . P 5 HOH A 214 814 94 HOH HOH . P 5 HOH A 215 815 101 HOH HOH . P 5 HOH A 216 816 153 HOH HOH . P 5 HOH A 217 817 114 HOH HOH . P 5 HOH A 218 818 349 HOH HOH . P 5 HOH A 219 819 111 HOH HOH . P 5 HOH A 220 820 151 HOH HOH . P 5 HOH A 221 821 299 HOH HOH . P 5 HOH A 222 822 268 HOH HOH . P 5 HOH A 223 823 279 HOH HOH . P 5 HOH A 224 824 245 HOH HOH . P 5 HOH A 225 825 142 HOH HOH . P 5 HOH A 226 826 329 HOH HOH . P 5 HOH A 227 827 284 HOH HOH . P 5 HOH A 228 828 211 HOH HOH . P 5 HOH A 229 829 339 HOH HOH . P 5 HOH A 230 830 1 HOH HOH . P 5 HOH A 231 831 144 HOH HOH . P 5 HOH A 232 832 337 HOH HOH . P 5 HOH A 233 833 323 HOH HOH . P 5 HOH A 234 834 75 HOH HOH . P 5 HOH A 235 835 335 HOH HOH . P 5 HOH A 236 836 55 HOH HOH . P 5 HOH A 237 837 340 HOH HOH . P 5 HOH A 238 838 199 HOH HOH . P 5 HOH A 239 839 203 HOH HOH . P 5 HOH A 240 840 314 HOH HOH . P 5 HOH A 241 841 291 HOH HOH . P 5 HOH A 242 842 354 HOH HOH . P 5 HOH A 243 843 305 HOH HOH . P 5 HOH A 244 844 303 HOH HOH . P 5 HOH A 245 845 309 HOH HOH . P 5 HOH A 246 846 162 HOH HOH . P 5 HOH A 247 847 280 HOH HOH . P 5 HOH A 248 848 338 HOH HOH . P 5 HOH A 249 849 103 HOH HOH . P 5 HOH A 250 850 272 HOH HOH . P 5 HOH A 251 851 83 HOH HOH . P 5 HOH A 252 852 295 HOH HOH . P 5 HOH A 253 853 70 HOH HOH . P 5 HOH A 254 854 174 HOH HOH . P 5 HOH A 255 855 217 HOH HOH . P 5 HOH A 256 856 342 HOH HOH . P 5 HOH A 257 857 308 HOH HOH . P 5 HOH A 258 858 292 HOH HOH . P 5 HOH A 259 859 356 HOH HOH . P 5 HOH A 260 860 98 HOH HOH . P 5 HOH A 261 861 190 HOH HOH . P 5 HOH A 262 862 288 HOH HOH . P 5 HOH A 263 863 249 HOH HOH . P 5 HOH A 264 864 240 HOH HOH . P 5 HOH A 265 865 152 HOH HOH . P 5 HOH A 266 866 294 HOH HOH . P 5 HOH A 267 867 289 HOH HOH . P 5 HOH A 268 868 316 HOH HOH . P 5 HOH A 269 869 237 HOH HOH . P 5 HOH A 270 870 242 HOH HOH . P 5 HOH A 271 871 100 HOH HOH . P 5 HOH A 272 872 275 HOH HOH . P 5 HOH A 273 873 235 HOH HOH . P 5 HOH A 274 874 254 HOH HOH . P 5 HOH A 275 875 65 HOH HOH . P 5 HOH A 276 876 345 HOH HOH . P 5 HOH A 277 877 137 HOH HOH . P 5 HOH A 278 878 260 HOH HOH . P 5 HOH A 279 879 353 HOH HOH . P 5 HOH A 280 880 328 HOH HOH . P 5 HOH A 281 881 187 HOH HOH . P 5 HOH A 282 882 182 HOH HOH . P 5 HOH A 283 883 81 HOH HOH . P 5 HOH A 284 884 124 HOH HOH . P 5 HOH A 285 885 306 HOH HOH . P 5 HOH A 286 886 195 HOH HOH . P 5 HOH A 287 887 212 HOH HOH . P 5 HOH A 288 888 276 HOH HOH . P 5 HOH A 289 889 14 HOH HOH . P 5 HOH A 290 890 223 HOH HOH . P 5 HOH A 291 891 298 HOH HOH . P 5 HOH A 292 892 320 HOH HOH . P 5 HOH A 293 893 69 HOH HOH . P 5 HOH A 294 894 172 HOH HOH . P 5 HOH A 295 895 77 HOH HOH . P 5 HOH A 296 896 141 HOH HOH . P 5 HOH A 297 897 293 HOH HOH . P 5 HOH A 298 898 236 HOH HOH . P 5 HOH A 299 899 343 HOH HOH . P 5 HOH A 300 900 192 HOH HOH . P 5 HOH A 301 901 225 HOH HOH . P 5 HOH A 302 902 269 HOH HOH . P 5 HOH A 303 903 243 HOH HOH . P 5 HOH A 304 904 241 HOH HOH . P 5 HOH A 305 905 247 HOH HOH . P 5 HOH A 306 906 54 HOH HOH . P 5 HOH A 307 907 250 HOH HOH . P 5 HOH A 308 908 99 HOH HOH . P 5 HOH A 309 909 246 HOH HOH . P 5 HOH A 310 910 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 29.988 15.22 8.828 1 38.43 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 2 28.788 16.001 8.907 1 29.1 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 2 30.516 15.007 10.24 1 40.31 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 2 31.136 16.201 10.799 1 45.61 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #