data_6YZA # _model_server_result.job_id uozNwkk4eBbxVadmQFXuuA _model_server_result.datetime_utc '2024-11-19 16:49:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6YZA # _exptl.entry_id 6YZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THIOPHENE-3-CARBOXIMIDAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YZA _cell.length_a 54.739 _cell.length_b 54.739 _cell.length_c 107.104 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 B CA CA . A CA 301 1_555 G O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 B CA CA . A CA 301 1_555 G O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'C5 H6 N2 S' _chem_comp.formula_weight 126.18 _chem_comp.id TP5 _chem_comp.mon_nstd_flag . _chem_comp.name THIOPHENE-3-CARBOXIMIDAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 S1 TP5 sing 319 n y C4 C1 TP5 doub 320 n y C4 HC4 TP5 sing 321 n n S1 C5 TP5 sing 322 n y C5 C3 TP5 doub 323 n y C5 HC5 TP5 sing 324 n n C3 C1 TP5 sing 325 n y C3 HC3 TP5 sing 326 n n C1 C2 TP5 sing 327 n n C2 N2 TP5 sing 328 n n C2 N1 TP5 doub 329 e n N2 HN21 TP5 sing 330 n n N2 HN22 TP5 sing 331 n n N1 HN1 TP5 sing 332 n n # _atom_sites.entry_id 6YZA _atom_sites.fract_transf_matrix[1][1] 0.018269 _atom_sites.fract_transf_matrix[1][2] 0.010547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 TP5 A 1 302 1 TP5 XXX . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 EDO A 1 304 1 EDO EDO . F 5 EDO A 1 305 3 EDO EDO . G 6 HOH A 1 401 102 HOH HOH . G 6 HOH A 2 402 163 HOH HOH . G 6 HOH A 3 403 73 HOH HOH . G 6 HOH A 4 404 135 HOH HOH . G 6 HOH A 5 405 122 HOH HOH . G 6 HOH A 6 406 15 HOH HOH . G 6 HOH A 7 407 1 HOH HOH . G 6 HOH A 8 408 60 HOH HOH . G 6 HOH A 9 409 179 HOH HOH . G 6 HOH A 10 410 64 HOH HOH . G 6 HOH A 11 411 105 HOH HOH . G 6 HOH A 12 412 100 HOH HOH . G 6 HOH A 13 413 186 HOH HOH . G 6 HOH A 14 414 5 HOH HOH . G 6 HOH A 15 415 7 HOH HOH . G 6 HOH A 16 416 17 HOH HOH . G 6 HOH A 17 417 48 HOH HOH . G 6 HOH A 18 418 39 HOH HOH . G 6 HOH A 19 419 94 HOH HOH . G 6 HOH A 20 420 67 HOH HOH . G 6 HOH A 21 421 97 HOH HOH . G 6 HOH A 22 422 111 HOH HOH . G 6 HOH A 23 423 132 HOH HOH . G 6 HOH A 24 424 117 HOH HOH . G 6 HOH A 25 425 12 HOH HOH . G 6 HOH A 26 426 109 HOH HOH . G 6 HOH A 27 427 83 HOH HOH . G 6 HOH A 28 428 82 HOH HOH . G 6 HOH A 29 429 45 HOH HOH . G 6 HOH A 30 430 43 HOH HOH . G 6 HOH A 31 431 127 HOH HOH . G 6 HOH A 32 432 123 HOH HOH . G 6 HOH A 33 433 93 HOH HOH . G 6 HOH A 34 434 151 HOH HOH . G 6 HOH A 35 435 46 HOH HOH . G 6 HOH A 36 436 158 HOH HOH . G 6 HOH A 37 437 71 HOH HOH . G 6 HOH A 38 438 52 HOH HOH . G 6 HOH A 39 439 89 HOH HOH . G 6 HOH A 40 440 41 HOH HOH . G 6 HOH A 41 441 162 HOH HOH . G 6 HOH A 42 442 58 HOH HOH . G 6 HOH A 43 443 130 HOH HOH . G 6 HOH A 44 444 30 HOH HOH . G 6 HOH A 45 445 18 HOH HOH . G 6 HOH A 46 446 125 HOH HOH . G 6 HOH A 47 447 13 HOH HOH . G 6 HOH A 48 448 26 HOH HOH . G 6 HOH A 49 449 137 HOH HOH . G 6 HOH A 50 450 4 HOH HOH . G 6 HOH A 51 451 11 HOH HOH . G 6 HOH A 52 452 10 HOH HOH . G 6 HOH A 53 453 120 HOH HOH . G 6 HOH A 54 454 38 HOH HOH . G 6 HOH A 55 455 27 HOH HOH . G 6 HOH A 56 456 29 HOH HOH . G 6 HOH A 57 457 8 HOH HOH . G 6 HOH A 58 458 33 HOH HOH . G 6 HOH A 59 459 65 HOH HOH . G 6 HOH A 60 460 2 HOH HOH . G 6 HOH A 61 461 3 HOH HOH . G 6 HOH A 62 462 32 HOH HOH . G 6 HOH A 63 463 88 HOH HOH . G 6 HOH A 64 464 139 HOH HOH . G 6 HOH A 65 465 81 HOH HOH . G 6 HOH A 66 466 61 HOH HOH . G 6 HOH A 67 467 36 HOH HOH . G 6 HOH A 68 468 69 HOH HOH . G 6 HOH A 69 469 53 HOH HOH . G 6 HOH A 70 470 154 HOH HOH . G 6 HOH A 71 471 74 HOH HOH . G 6 HOH A 72 472 23 HOH HOH . G 6 HOH A 73 473 178 HOH HOH . G 6 HOH A 74 474 103 HOH HOH . G 6 HOH A 75 475 31 HOH HOH . G 6 HOH A 76 476 28 HOH HOH . G 6 HOH A 77 477 182 HOH HOH . G 6 HOH A 78 478 171 HOH HOH . G 6 HOH A 79 479 47 HOH HOH . G 6 HOH A 80 480 187 HOH HOH . G 6 HOH A 81 481 14 HOH HOH . G 6 HOH A 82 482 176 HOH HOH . G 6 HOH A 83 483 19 HOH HOH . G 6 HOH A 84 484 75 HOH HOH . G 6 HOH A 85 485 20 HOH HOH . G 6 HOH A 86 486 121 HOH HOH . G 6 HOH A 87 487 183 HOH HOH . G 6 HOH A 88 488 6 HOH HOH . G 6 HOH A 89 489 174 HOH HOH . G 6 HOH A 90 490 141 HOH HOH . G 6 HOH A 91 491 115 HOH HOH . G 6 HOH A 92 492 134 HOH HOH . G 6 HOH A 93 493 106 HOH HOH . G 6 HOH A 94 494 190 HOH HOH . G 6 HOH A 95 495 70 HOH HOH . G 6 HOH A 96 496 181 HOH HOH . G 6 HOH A 97 497 25 HOH HOH . G 6 HOH A 98 498 51 HOH HOH . G 6 HOH A 99 499 63 HOH HOH . G 6 HOH A 100 500 92 HOH HOH . G 6 HOH A 101 501 56 HOH HOH . G 6 HOH A 102 502 35 HOH HOH . G 6 HOH A 103 503 80 HOH HOH . G 6 HOH A 104 504 161 HOH HOH . G 6 HOH A 105 505 68 HOH HOH . G 6 HOH A 106 506 138 HOH HOH . G 6 HOH A 107 507 112 HOH HOH . G 6 HOH A 108 508 59 HOH HOH . G 6 HOH A 109 509 175 HOH HOH . G 6 HOH A 110 510 49 HOH HOH . G 6 HOH A 111 511 86 HOH HOH . G 6 HOH A 112 512 62 HOH HOH . G 6 HOH A 113 513 50 HOH HOH . G 6 HOH A 114 514 37 HOH HOH . G 6 HOH A 115 515 90 HOH HOH . G 6 HOH A 116 516 40 HOH HOH . G 6 HOH A 117 517 57 HOH HOH . G 6 HOH A 118 518 72 HOH HOH . G 6 HOH A 119 519 157 HOH HOH . G 6 HOH A 120 520 24 HOH HOH . G 6 HOH A 121 521 77 HOH HOH . G 6 HOH A 122 522 76 HOH HOH . G 6 HOH A 123 523 165 HOH HOH . G 6 HOH A 124 524 79 HOH HOH . G 6 HOH A 125 525 169 HOH HOH . G 6 HOH A 126 526 155 HOH HOH . G 6 HOH A 127 527 44 HOH HOH . G 6 HOH A 128 528 168 HOH HOH . G 6 HOH A 129 529 96 HOH HOH . G 6 HOH A 130 530 9 HOH HOH . G 6 HOH A 131 531 128 HOH HOH . G 6 HOH A 132 532 107 HOH HOH . G 6 HOH A 133 533 91 HOH HOH . G 6 HOH A 134 534 87 HOH HOH . G 6 HOH A 135 535 101 HOH HOH . G 6 HOH A 136 536 108 HOH HOH . G 6 HOH A 137 537 177 HOH HOH . G 6 HOH A 138 538 99 HOH HOH . G 6 HOH A 139 539 152 HOH HOH . G 6 HOH A 140 540 118 HOH HOH . G 6 HOH A 141 541 180 HOH HOH . G 6 HOH A 142 542 119 HOH HOH . G 6 HOH A 143 543 114 HOH HOH . G 6 HOH A 144 544 167 HOH HOH . G 6 HOH A 145 545 126 HOH HOH . G 6 HOH A 146 546 170 HOH HOH . G 6 HOH A 147 547 133 HOH HOH . G 6 HOH A 148 548 21 HOH HOH . G 6 HOH A 149 549 156 HOH HOH . G 6 HOH A 150 550 166 HOH HOH . G 6 HOH A 151 551 34 HOH HOH . G 6 HOH A 152 552 173 HOH HOH . G 6 HOH A 153 553 184 HOH HOH . G 6 HOH A 154 554 185 HOH HOH . G 6 HOH A 155 555 78 HOH HOH . G 6 HOH A 156 556 66 HOH HOH . G 6 HOH A 157 557 113 HOH HOH . G 6 HOH A 158 558 159 HOH HOH . G 6 HOH A 159 559 116 HOH HOH . G 6 HOH A 160 560 104 HOH HOH . G 6 HOH A 161 561 140 HOH HOH . G 6 HOH A 162 562 144 HOH HOH . G 6 HOH A 163 563 153 HOH HOH . G 6 HOH A 164 564 54 HOH HOH . G 6 HOH A 165 565 160 HOH HOH . G 6 HOH A 166 566 150 HOH HOH . G 6 HOH A 167 567 147 HOH HOH . G 6 HOH A 168 568 129 HOH HOH . G 6 HOH A 169 569 164 HOH HOH . G 6 HOH A 170 570 143 HOH HOH . G 6 HOH A 171 571 188 HOH HOH . G 6 HOH A 172 572 84 HOH HOH . G 6 HOH A 173 573 110 HOH HOH . G 6 HOH A 174 574 98 HOH HOH . G 6 HOH A 175 575 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TP5 . . . C 3 21.881 2.819 1.62 0.85 20.33 ? C4 TP5 302 A 1 HETATM 2 S S1 TP5 . . . C 3 22.897 2.798 2.967 0.85 22.67 ? S1 TP5 302 A 1 HETATM 3 C C5 TP5 . . . C 3 22.248 1.34 3.614 0.85 20.27 ? C5 TP5 302 A 1 HETATM 4 C C3 TP5 . . . C 3 21.24 0.897 2.765 0.85 17.92 ? C3 TP5 302 A 1 HETATM 5 C C1 TP5 . . . C 3 21.026 1.754 1.609 0.85 17.15 ? C1 TP5 302 A 1 HETATM 6 C C2 TP5 . . . C 3 20.03 1.533 0.593 0.85 16.46 ? C2 TP5 302 A 1 HETATM 7 N N2 TP5 . . . C 3 19.195 0.541 0.715 0.85 17.4 ? N2 TP5 302 A 1 HETATM 8 N N1 TP5 . . . C 3 19.945 2.344 -0.438 0.85 21.52 ? N1 TP5 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #