data_6YZC # _model_server_result.job_id iBO_pTWpA0n1PeXAEbCueg _model_server_result.datetime_utc '2024-11-09 02:09:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6YZC # _exptl.entry_id 6YZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.21 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YZC _cell.length_a 54.614 _cell.length_b 54.614 _cell.length_c 107.478 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 B CA CA . A CA 301 1_555 E O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 B CA CA . A CA 301 1_555 E O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C8 H15 N O2' _chem_comp.formula_weight 157.21 _chem_comp.id AMH _chem_comp.mon_nstd_flag . _chem_comp.name 'TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AMH sing 13 n n C1 C6 AMH sing 14 n n C1 C8 AMH sing 15 n n C1 H1 AMH sing 16 n n C2 C3 AMH sing 17 n n C2 H21 AMH sing 18 n n C2 H22 AMH sing 19 n n C3 C4 AMH sing 20 n n C3 H31 AMH sing 21 n n C3 H32 AMH sing 22 n n C4 C5 AMH sing 23 n n C4 C7 AMH sing 24 n n C4 H4 AMH sing 25 n n C5 C6 AMH sing 26 n n C5 H51 AMH sing 27 n n C5 H52 AMH sing 28 n n C6 H61 AMH sing 29 n n C6 H62 AMH sing 30 n n C7 N AMH sing 31 n n C7 H71 AMH sing 32 n n C7 H72 AMH sing 33 n n C8 O1 AMH doub 34 n n C8 O2 AMH sing 35 n n N HN1 AMH sing 36 n n N HN2 AMH sing 37 n n O2 HO2 AMH sing 38 n n # _atom_sites.entry_id 6YZC _atom_sites.fract_transf_matrix[1][1] 0.01831 _atom_sites.fract_transf_matrix[1][2] 0.010571 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 AMH A 1 302 1 AMH J86 . D 4 EDO A 1 303 1 EDO EDO . E 5 HOH A 1 401 28 HOH HOH . E 5 HOH A 2 402 107 HOH HOH . E 5 HOH A 3 403 26 HOH HOH . E 5 HOH A 4 404 168 HOH HOH . E 5 HOH A 5 405 173 HOH HOH . E 5 HOH A 6 406 127 HOH HOH . E 5 HOH A 7 407 77 HOH HOH . E 5 HOH A 8 408 58 HOH HOH . E 5 HOH A 9 409 142 HOH HOH . E 5 HOH A 10 410 151 HOH HOH . E 5 HOH A 11 411 133 HOH HOH . E 5 HOH A 12 412 158 HOH HOH . E 5 HOH A 13 413 99 HOH HOH . E 5 HOH A 14 414 80 HOH HOH . E 5 HOH A 15 415 75 HOH HOH . E 5 HOH A 16 416 1 HOH HOH . E 5 HOH A 17 417 6 HOH HOH . E 5 HOH A 18 418 53 HOH HOH . E 5 HOH A 19 419 115 HOH HOH . E 5 HOH A 20 420 36 HOH HOH . E 5 HOH A 21 421 59 HOH HOH . E 5 HOH A 22 422 141 HOH HOH . E 5 HOH A 23 423 136 HOH HOH . E 5 HOH A 24 424 161 HOH HOH . E 5 HOH A 25 425 104 HOH HOH . E 5 HOH A 26 426 89 HOH HOH . E 5 HOH A 27 427 69 HOH HOH . E 5 HOH A 28 428 114 HOH HOH . E 5 HOH A 29 429 113 HOH HOH . E 5 HOH A 30 430 14 HOH HOH . E 5 HOH A 31 431 153 HOH HOH . E 5 HOH A 32 432 64 HOH HOH . E 5 HOH A 33 433 84 HOH HOH . E 5 HOH A 34 434 105 HOH HOH . E 5 HOH A 35 435 16 HOH HOH . E 5 HOH A 36 436 56 HOH HOH . E 5 HOH A 37 437 15 HOH HOH . E 5 HOH A 38 438 34 HOH HOH . E 5 HOH A 39 439 132 HOH HOH . E 5 HOH A 40 440 164 HOH HOH . E 5 HOH A 41 441 112 HOH HOH . E 5 HOH A 42 442 35 HOH HOH . E 5 HOH A 43 443 88 HOH HOH . E 5 HOH A 44 444 30 HOH HOH . E 5 HOH A 45 445 62 HOH HOH . E 5 HOH A 46 446 2 HOH HOH . E 5 HOH A 47 447 4 HOH HOH . E 5 HOH A 48 448 27 HOH HOH . E 5 HOH A 49 449 9 HOH HOH . E 5 HOH A 50 450 5 HOH HOH . E 5 HOH A 51 451 11 HOH HOH . E 5 HOH A 52 452 74 HOH HOH . E 5 HOH A 53 453 24 HOH HOH . E 5 HOH A 54 454 178 HOH HOH . E 5 HOH A 55 455 49 HOH HOH . E 5 HOH A 56 456 3 HOH HOH . E 5 HOH A 57 457 109 HOH HOH . E 5 HOH A 58 458 76 HOH HOH . E 5 HOH A 59 459 70 HOH HOH . E 5 HOH A 60 460 54 HOH HOH . E 5 HOH A 61 461 118 HOH HOH . E 5 HOH A 62 462 17 HOH HOH . E 5 HOH A 63 463 152 HOH HOH . E 5 HOH A 64 464 171 HOH HOH . E 5 HOH A 65 465 33 HOH HOH . E 5 HOH A 66 466 39 HOH HOH . E 5 HOH A 67 467 23 HOH HOH . E 5 HOH A 68 468 121 HOH HOH . E 5 HOH A 69 469 55 HOH HOH . E 5 HOH A 70 470 38 HOH HOH . E 5 HOH A 71 471 87 HOH HOH . E 5 HOH A 72 472 139 HOH HOH . E 5 HOH A 73 473 18 HOH HOH . E 5 HOH A 74 474 163 HOH HOH . E 5 HOH A 75 475 182 HOH HOH . E 5 HOH A 76 476 145 HOH HOH . E 5 HOH A 77 477 131 HOH HOH . E 5 HOH A 78 478 42 HOH HOH . E 5 HOH A 79 479 19 HOH HOH . E 5 HOH A 80 480 192 HOH HOH . E 5 HOH A 81 481 7 HOH HOH . E 5 HOH A 82 482 116 HOH HOH . E 5 HOH A 83 483 129 HOH HOH . E 5 HOH A 84 484 47 HOH HOH . E 5 HOH A 85 485 29 HOH HOH . E 5 HOH A 86 486 108 HOH HOH . E 5 HOH A 87 487 21 HOH HOH . E 5 HOH A 88 488 48 HOH HOH . E 5 HOH A 89 489 110 HOH HOH . E 5 HOH A 90 490 79 HOH HOH . E 5 HOH A 91 491 41 HOH HOH . E 5 HOH A 92 492 166 HOH HOH . E 5 HOH A 93 493 134 HOH HOH . E 5 HOH A 94 494 73 HOH HOH . E 5 HOH A 95 495 43 HOH HOH . E 5 HOH A 96 496 120 HOH HOH . E 5 HOH A 97 497 85 HOH HOH . E 5 HOH A 98 498 13 HOH HOH . E 5 HOH A 99 499 144 HOH HOH . E 5 HOH A 100 500 52 HOH HOH . E 5 HOH A 101 501 20 HOH HOH . E 5 HOH A 102 502 157 HOH HOH . E 5 HOH A 103 503 169 HOH HOH . E 5 HOH A 104 504 46 HOH HOH . E 5 HOH A 105 505 45 HOH HOH . E 5 HOH A 106 506 82 HOH HOH . E 5 HOH A 107 507 44 HOH HOH . E 5 HOH A 108 508 40 HOH HOH . E 5 HOH A 109 509 66 HOH HOH . E 5 HOH A 110 510 172 HOH HOH . E 5 HOH A 111 511 86 HOH HOH . E 5 HOH A 112 512 37 HOH HOH . E 5 HOH A 113 513 61 HOH HOH . E 5 HOH A 114 514 22 HOH HOH . E 5 HOH A 115 515 160 HOH HOH . E 5 HOH A 116 516 106 HOH HOH . E 5 HOH A 117 517 60 HOH HOH . E 5 HOH A 118 518 65 HOH HOH . E 5 HOH A 119 519 31 HOH HOH . E 5 HOH A 120 520 83 HOH HOH . E 5 HOH A 121 521 96 HOH HOH . E 5 HOH A 122 522 119 HOH HOH . E 5 HOH A 123 523 78 HOH HOH . E 5 HOH A 124 524 94 HOH HOH . E 5 HOH A 125 525 93 HOH HOH . E 5 HOH A 126 526 81 HOH HOH . E 5 HOH A 127 527 102 HOH HOH . E 5 HOH A 128 528 51 HOH HOH . E 5 HOH A 129 529 12 HOH HOH . E 5 HOH A 130 530 159 HOH HOH . E 5 HOH A 131 531 167 HOH HOH . E 5 HOH A 132 532 90 HOH HOH . E 5 HOH A 133 533 181 HOH HOH . E 5 HOH A 134 534 67 HOH HOH . E 5 HOH A 135 535 180 HOH HOH . E 5 HOH A 136 536 135 HOH HOH . E 5 HOH A 137 537 177 HOH HOH . E 5 HOH A 138 538 57 HOH HOH . E 5 HOH A 139 539 68 HOH HOH . E 5 HOH A 140 540 100 HOH HOH . E 5 HOH A 141 541 154 HOH HOH . E 5 HOH A 142 542 117 HOH HOH . E 5 HOH A 143 543 25 HOH HOH . E 5 HOH A 144 544 92 HOH HOH . E 5 HOH A 145 545 97 HOH HOH . E 5 HOH A 146 546 186 HOH HOH . E 5 HOH A 147 547 170 HOH HOH . E 5 HOH A 148 548 71 HOH HOH . E 5 HOH A 149 549 130 HOH HOH . E 5 HOH A 150 550 50 HOH HOH . E 5 HOH A 151 551 125 HOH HOH . E 5 HOH A 152 552 187 HOH HOH . E 5 HOH A 153 553 98 HOH HOH . E 5 HOH A 154 554 185 HOH HOH . E 5 HOH A 155 555 184 HOH HOH . E 5 HOH A 156 556 32 HOH HOH . E 5 HOH A 157 557 148 HOH HOH . E 5 HOH A 158 558 176 HOH HOH . E 5 HOH A 159 559 149 HOH HOH . E 5 HOH A 160 560 150 HOH HOH . E 5 HOH A 161 561 175 HOH HOH . E 5 HOH A 162 562 91 HOH HOH . E 5 HOH A 163 563 179 HOH HOH . E 5 HOH A 164 564 124 HOH HOH . E 5 HOH A 165 565 194 HOH HOH . E 5 HOH A 166 566 189 HOH HOH . E 5 HOH A 167 567 190 HOH HOH . E 5 HOH A 168 568 103 HOH HOH . E 5 HOH A 169 569 156 HOH HOH . E 5 HOH A 170 570 191 HOH HOH . E 5 HOH A 171 571 140 HOH HOH . E 5 HOH A 172 572 162 HOH HOH . E 5 HOH A 173 573 183 HOH HOH . E 5 HOH A 174 574 63 HOH HOH . E 5 HOH A 175 575 188 HOH HOH . E 5 HOH A 176 576 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AMH . A . C 3 23.685 2.209 3.265 0.54 22.88 ? C1 AMH 302 A 1 HETATM 2 C C1 AMH . B . C 3 22.884 2.538 3.738 0.46 19.2 ? C1 AMH 302 A 1 HETATM 3 C C2 AMH . A . C 3 22.616 1.245 3.784 0.54 22.46 ? C2 AMH 302 A 1 HETATM 4 C C2 AMH . B . C 3 21.843 1.471 4.098 0.46 18.04 ? C2 AMH 302 A 1 HETATM 5 C C3 AMH . A . C 3 21.754 0.727 2.639 0.54 20.83 ? C3 AMH 302 A 1 HETATM 6 C C3 AMH . B . C 3 21.256 0.836 2.841 0.46 16 ? C3 AMH 302 A 1 HETATM 7 C C4 AMH . A . C 3 21.081 1.859 1.871 0.54 21.3 ? C4 AMH 302 A 1 HETATM 8 C C4 AMH . B . C 3 20.612 1.874 1.937 0.46 15.17 ? C4 AMH 302 A 1 HETATM 9 C C5 AMH . A . C 3 22.147 2.829 1.374 0.54 22.11 ? C5 AMH 302 A 1 HETATM 10 C C5 AMH . B . C 3 21.662 2.907 1.561 0.46 16.52 ? C5 AMH 302 A 1 HETATM 11 C C6 AMH . A . C 3 23.017 3.363 2.508 0.54 22.5 ? C6 AMH 302 A 1 HETATM 12 C C6 AMH . B . C 3 22.265 3.575 2.791 0.46 17.86 ? C6 AMH 302 A 1 HETATM 13 C C7 AMH . A . C 3 20.243 1.321 0.722 0.54 21.16 ? C7 AMH 302 A 1 HETATM 14 C C7 AMH . B . C 3 19.994 1.236 0.702 0.46 14.97 ? C7 AMH 302 A 1 HETATM 15 C C8 AMH . A . C 3 24.566 2.699 4.391 0.54 23.75 ? C8 AMH 302 A 1 HETATM 16 C C8 AMH . B . C 3 23.416 3.211 4.98 0.46 20.59 ? C8 AMH 302 A 1 HETATM 17 N N AMH . A . C 3 19.538 2.404 0.037 0.54 20.8 ? N AMH 302 A 1 HETATM 18 N N AMH . B . C 3 19.209 2.218 -0.05 0.46 15.5 ? N AMH 302 A 1 HETATM 19 O O1 AMH . A . C 3 25.698 2.311 4.545 0.54 24.53 ? O1 AMH 302 A 1 HETATM 20 O O1 AMH . B . C 3 22.964 2.99 6.088 0.46 22.1 ? O1 AMH 302 A 1 HETATM 21 O O2 AMH . A . C 3 23.98 3.557 5.187 0.54 26.58 ? O2 AMH 302 A 1 HETATM 22 O O2 AMH . B . C 3 24.382 4.075 4.737 0.46 19.21 ? O2 AMH 302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #