data_6YZZ # _model_server_result.job_id rJu8VnyURtndG7dNUHtVBg _model_server_result.datetime_utc '2024-11-13 07:13:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yzz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6YZZ # _exptl.entry_id 6YZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YZZ _cell.length_a 100.164 _cell.length_b 100.164 _cell.length_c 100.164 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6YZZ _atom_sites.fract_transf_matrix[1][1] 0.009984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 201 202 ACO ACO . C 3 HOH A 1 301 85 HOH HOH . C 3 HOH A 2 302 24 HOH HOH . C 3 HOH A 3 303 65 HOH HOH . C 3 HOH A 4 304 67 HOH HOH . C 3 HOH A 5 305 35 HOH HOH . C 3 HOH A 6 306 80 HOH HOH . C 3 HOH A 7 307 31 HOH HOH . C 3 HOH A 8 308 34 HOH HOH . C 3 HOH A 9 309 88 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 3 HOH HOH . C 3 HOH A 12 312 18 HOH HOH . C 3 HOH A 13 313 15 HOH HOH . C 3 HOH A 14 314 17 HOH HOH . C 3 HOH A 15 315 60 HOH HOH . C 3 HOH A 16 316 33 HOH HOH . C 3 HOH A 17 317 21 HOH HOH . C 3 HOH A 18 318 46 HOH HOH . C 3 HOH A 19 319 38 HOH HOH . C 3 HOH A 20 320 4 HOH HOH . C 3 HOH A 21 321 9 HOH HOH . C 3 HOH A 22 322 12 HOH HOH . C 3 HOH A 23 323 54 HOH HOH . C 3 HOH A 24 324 2 HOH HOH . C 3 HOH A 25 325 28 HOH HOH . C 3 HOH A 26 326 16 HOH HOH . C 3 HOH A 27 327 71 HOH HOH . C 3 HOH A 28 328 82 HOH HOH . C 3 HOH A 29 329 40 HOH HOH . C 3 HOH A 30 330 49 HOH HOH . C 3 HOH A 31 331 13 HOH HOH . C 3 HOH A 32 332 75 HOH HOH . C 3 HOH A 33 333 27 HOH HOH . C 3 HOH A 34 334 41 HOH HOH . C 3 HOH A 35 335 83 HOH HOH . C 3 HOH A 36 336 76 HOH HOH . C 3 HOH A 37 337 78 HOH HOH . C 3 HOH A 38 338 20 HOH HOH . C 3 HOH A 39 339 1 HOH HOH . C 3 HOH A 40 340 6 HOH HOH . C 3 HOH A 41 341 29 HOH HOH . C 3 HOH A 42 342 73 HOH HOH . C 3 HOH A 43 343 19 HOH HOH . C 3 HOH A 44 344 74 HOH HOH . C 3 HOH A 45 345 8 HOH HOH . C 3 HOH A 46 346 7 HOH HOH . C 3 HOH A 47 347 59 HOH HOH . C 3 HOH A 48 348 57 HOH HOH . C 3 HOH A 49 349 69 HOH HOH . C 3 HOH A 50 350 23 HOH HOH . C 3 HOH A 51 351 22 HOH HOH . C 3 HOH A 52 352 5 HOH HOH . C 3 HOH A 53 353 32 HOH HOH . C 3 HOH A 54 354 36 HOH HOH . C 3 HOH A 55 355 11 HOH HOH . C 3 HOH A 56 356 39 HOH HOH . C 3 HOH A 57 357 84 HOH HOH . C 3 HOH A 58 358 77 HOH HOH . C 3 HOH A 59 359 30 HOH HOH . C 3 HOH A 60 360 37 HOH HOH . C 3 HOH A 61 361 58 HOH HOH . C 3 HOH A 62 362 68 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 25 HOH HOH . C 3 HOH A 65 365 52 HOH HOH . C 3 HOH A 66 366 61 HOH HOH . C 3 HOH A 67 367 79 HOH HOH . C 3 HOH A 68 368 81 HOH HOH . C 3 HOH A 69 369 64 HOH HOH . C 3 HOH A 70 370 56 HOH HOH . C 3 HOH A 71 371 14 HOH HOH . C 3 HOH A 72 372 66 HOH HOH . C 3 HOH A 73 373 44 HOH HOH . C 3 HOH A 74 374 47 HOH HOH . C 3 HOH A 75 375 62 HOH HOH . C 3 HOH A 76 376 87 HOH HOH . C 3 HOH A 77 377 45 HOH HOH . C 3 HOH A 78 378 43 HOH HOH . C 3 HOH A 79 379 26 HOH HOH . C 3 HOH A 80 380 50 HOH HOH . C 3 HOH A 81 381 51 HOH HOH . C 3 HOH A 82 382 72 HOH HOH . C 3 HOH A 83 383 70 HOH HOH . C 3 HOH A 84 384 53 HOH HOH . C 3 HOH A 85 385 42 HOH HOH . C 3 HOH A 86 386 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 -11.149 41.443 -5.655 1 75.14 ? N1A ACO 201 A 1 HETATM 2 C C2A ACO . . . B 2 -12.259 41.093 -6.401 1 72.25 ? C2A ACO 201 A 1 HETATM 3 N N3A ACO . . . B 2 -13.549 40.961 -6.047 1 72.37 ? N3A ACO 201 A 1 HETATM 4 C C4A ACO . . . B 2 -13.751 41.23 -4.697 1 73.9 ? C4A ACO 201 A 1 HETATM 5 C C5A ACO . . . B 2 -12.709 41.605 -3.786 1 77.47 ? C5A ACO 201 A 1 HETATM 6 C C6A ACO . . . B 2 -11.397 41.7 -4.322 1 77.91 ? C6A ACO 201 A 1 HETATM 7 N N6A ACO . . . B 2 -10.34 42.054 -3.513 1 75.23 ? N6A ACO 201 A 1 HETATM 8 N N7A ACO . . . B 2 -13.224 41.813 -2.488 1 78.03 ? N7A ACO 201 A 1 HETATM 9 C C8A ACO . . . B 2 -14.55 41.568 -2.621 1 76.85 ? C8A ACO 201 A 1 HETATM 10 N N9A ACO . . . B 2 -14.907 41.224 -3.935 1 75.06 ? N9A ACO 201 A 1 HETATM 11 C C1B ACO . . . B 2 -16.236 40.873 -4.449 1 79.56 ? C1B ACO 201 A 1 HETATM 12 C C2B ACO . . . B 2 -16.792 42.021 -5.347 1 83.07 ? C2B ACO 201 A 1 HETATM 13 O O2B ACO . . . B 2 -17.959 42.549 -4.812 1 87.56 ? O2B ACO 201 A 1 HETATM 14 C C3B ACO . . . B 2 -17.109 41.229 -6.678 1 80.95 ? C3B ACO 201 A 1 HETATM 15 O O3B ACO . . . B 2 -18.384 41.424 -7.039 1 89.72 ? O3B ACO 201 A 1 HETATM 16 P P3B ACO . . . B 2 -18.476 42.519 -8.517 1 95.15 ? P3B ACO 201 A 1 HETATM 17 O O7A ACO . . . B 2 -18.567 43.791 -7.72 1 94.34 ? O7A ACO 201 A 1 HETATM 18 O O8A ACO . . . B 2 -17.186 42.241 -9.272 1 94.47 ? O8A ACO 201 A 1 HETATM 19 O O9A ACO . . . B 2 -19.786 42.004 -9.07 1 94.66 ? O9A ACO 201 A 1 HETATM 20 C C4B ACO . . . B 2 -16.92 39.751 -6.286 1 68.76 ? C4B ACO 201 A 1 HETATM 21 O O4B ACO . . . B 2 -16.017 39.718 -5.224 1 72.97 ? O4B ACO 201 A 1 HETATM 22 C C5B ACO . . . B 2 -16.304 38.992 -7.427 1 61.82 ? C5B ACO 201 A 1 HETATM 23 O O5B ACO . . . B 2 -16.96 37.765 -7.512 1 50.56 ? O5B ACO 201 A 1 HETATM 24 P P1A ACO . . . B 2 -15.79 36.644 -7.444 1 41.05 ? P1A ACO 201 A 1 HETATM 25 O O1A ACO . . . B 2 -14.766 36.964 -8.462 1 42.58 ? O1A ACO 201 A 1 HETATM 26 O O2A ACO . . . B 2 -16.448 35.281 -7.449 1 38.74 ? O2A ACO 201 A 1 HETATM 27 O O3A ACO . . . B 2 -15.04 36.854 -5.943 1 44.96 ? O3A ACO 201 A 1 HETATM 28 P P2A ACO . . . B 2 -13.493 36.419 -5.758 1 37.6 ? P2A ACO 201 A 1 HETATM 29 O O4A ACO . . . B 2 -13.11 35.188 -6.463 1 34.36 ? O4A ACO 201 A 1 HETATM 30 O O5A ACO . . . B 2 -12.561 37.602 -5.676 1 41.8 ? O5A ACO 201 A 1 HETATM 31 O O6A ACO . . . B 2 -13.548 35.883 -4.111 1 40.51 ? O6A ACO 201 A 1 HETATM 32 C CBP ACO . . . B 2 -13.434 36.984 -2.068 1 35.3 ? CBP ACO 201 A 1 HETATM 33 C CCP ACO . . . B 2 -14.187 36.861 -3.409 1 31.09 ? CCP ACO 201 A 1 HETATM 34 C CDP ACO . . . B 2 -13.543 35.652 -1.332 1 41.02 ? CDP ACO 201 A 1 HETATM 35 C CEP ACO . . . B 2 -14.059 38.096 -1.239 1 40.59 ? CEP ACO 201 A 1 HETATM 36 C CAP ACO . . . B 2 -11.966 37.309 -2.456 1 43.56 ? CAP ACO 201 A 1 HETATM 37 O OAP ACO . . . B 2 -11.818 38.511 -3.137 1 47.94 ? OAP ACO 201 A 1 HETATM 38 C C9P ACO . . . B 2 -11.08 37.38 -1.204 1 42.25 ? C9P ACO 201 A 1 HETATM 39 O O9P ACO . . . B 2 -10.54 36.38 -0.747 1 37.63 ? O9P ACO 201 A 1 HETATM 40 N N8P ACO . . . B 2 -10.898 38.631 -0.602 1 52.65 ? N8P ACO 201 A 1 HETATM 41 C C7P ACO . . . B 2 -10.053 38.763 0.608 1 63.63 ? C7P ACO 201 A 1 HETATM 42 C C6P ACO . . . B 2 -10.577 37.857 1.773 1 77.45 ? C6P ACO 201 A 1 HETATM 43 C C5P ACO . . . B 2 -11.856 38.447 2.322 1 89.07 ? C5P ACO 201 A 1 HETATM 44 O O5P ACO . . . B 2 -12.156 39.633 2.265 1 93.87 ? O5P ACO 201 A 1 HETATM 45 N N4P ACO . . . B 2 -12.735 37.542 2.93 1 91.49 ? N4P ACO 201 A 1 HETATM 46 C C3P ACO . . . B 2 -14 38.068 3.488 1 94.36 ? C3P ACO 201 A 1 HETATM 47 C C2P ACO . . . B 2 -14.892 36.905 3.922 1 98.07 ? C2P ACO 201 A 1 HETATM 48 S S1P ACO . . . B 2 -15.612 37.24 5.592 1 99.88 ? S1P ACO 201 A 1 HETATM 49 C C ACO . . . B 2 -15.846 35.534 6.105 1 92.48 ? C ACO 201 A 1 HETATM 50 O O ACO . . . B 2 -15.945 34.653 5.28 1 89.05 ? O ACO 201 A 1 HETATM 51 C CH3 ACO . . . B 2 -15.871 35.231 7.577 1 88.17 ? CH3 ACO 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #