data_6Z06 # _model_server_result.job_id Uul_BzlMnRQjFHAqNIaYUw _model_server_result.datetime_utc '2024-10-11 06:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1201}' # _entry.id 6Z06 # _exptl.entry_id 6Z06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.66 _cell.angle_gamma 90 _cell.entry_id 6Z06 _cell.length_a 97.213 _cell.length_b 50.449 _cell.length_c 124.446 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 H CYS 22 1_555 A SG CYS 98 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 146 H CYS 144 1_555 A SG CYS 201 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 25 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 90 A CYS 745 1_555 C SG CYS 125 A CYS 780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 94 A CYS 749 1_555 C SG CYS 132 A CYS 787 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 C SG CYS 106 A CYS 761 1_555 C SG CYS 239 A CYS 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 120 A CYS 775 1_555 C SG CYS 250 A CYS 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 C SG CYS 135 A CYS 790 1_555 C SG CYS 258 A CYS 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 C SG CYS 161 A CYS 816 1_555 C SG CYS 170 A CYS 825 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 178 A CYS 833 1_555 C SG CYS 187 A CYS 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 218 A CYS 873 1_555 C SG CYS 222 A CYS 877 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 C SG CYS 324 A CYS 979 1_555 C SG CYS 354 A CYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 C SG CYS 347 A CYS 1002 1_555 C SG CYS 399 A CYS 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 C SG CYS 364 A CYS 1019 1_555 C SG CYS 369 A CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 C SG CYS 400 A CYS 1055 1_555 C SG CYS 405 A CYS 1060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 C SG CYS 439 A CYS 1094 1_555 C SG CYS 443 A CYS 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C ND2 ASN 282 A ASN 937 1_555 E C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 248 n n C1 O1 NAG sing 249 n n C1 O5 NAG sing 250 n n C1 H1 NAG sing 251 n n C2 C3 NAG sing 252 n n C2 N2 NAG sing 253 n n C2 H2 NAG sing 254 n n C3 C4 NAG sing 255 n n C3 O3 NAG sing 256 n n C3 H3 NAG sing 257 n n C4 C5 NAG sing 258 n n C4 O4 NAG sing 259 n n C4 H4 NAG sing 260 n n C5 C6 NAG sing 261 n n C5 O5 NAG sing 262 n n C5 H5 NAG sing 263 n n C6 O6 NAG sing 264 n n C6 H61 NAG sing 265 n n C6 H62 NAG sing 266 n n C7 C8 NAG sing 267 n n C7 N2 NAG sing 268 n n C7 O7 NAG doub 269 n n C8 H81 NAG sing 270 n n C8 H82 NAG sing 271 n n C8 H83 NAG sing 272 n n N2 HN2 NAG sing 273 n n O1 HO1 NAG sing 274 n n O3 HO3 NAG sing 275 n n O4 HO4 NAG sing 276 n n O6 HO6 NAG sing 277 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6Z06 _atom_sites.fract_transf_matrix[1][1] 0.010287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003275 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL L 1 301 2 GOL GOL . E 5 NAG A 1 1201 1102 NAG NAG . F 4 GOL A 1 1202 1 GOL GOL . G 4 GOL A 1 1203 3 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -44.16 -2.32 -25.592 1 34.44 ? C1 NAG 1201 A 1 HETATM 2 C C2 NAG . . . E 5 -44.156 -3.833 -25.367 1 29.8 ? C2 NAG 1201 A 1 HETATM 3 C C3 NAG . . . E 5 -45.353 -4.477 -26.062 1 28.45 ? C3 NAG 1201 A 1 HETATM 4 C C4 NAG . . . E 5 -46.647 -3.799 -25.633 1 31.88 ? C4 NAG 1201 A 1 HETATM 5 C C5 NAG . . . E 5 -46.551 -2.294 -25.859 1 36.91 ? C5 NAG 1201 A 1 HETATM 6 C C6 NAG . . . E 5 -47.759 -1.542 -25.349 1 44.48 ? C6 NAG 1201 A 1 HETATM 7 C C7 NAG . . . E 5 -42.379 -5.524 -25.287 1 43.54 ? C7 NAG 1201 A 1 HETATM 8 C C8 NAG . . . E 5 -41.095 -6.002 -25.895 1 46.49 ? C8 NAG 1201 A 1 HETATM 9 N N2 NAG . . . E 5 -42.914 -4.428 -25.834 1 40.32 ? N2 NAG 1201 A 1 HETATM 10 O O3 NAG . . . E 5 -45.403 -5.861 -25.736 1 30.88 ? O3 NAG 1201 A 1 HETATM 11 O O4 NAG . . . E 5 -47.742 -4.316 -26.381 1 44.74 ? O4 NAG 1201 A 1 HETATM 12 O O5 NAG . . . E 5 -45.412 -1.77 -25.16 1 31.39 ? O5 NAG 1201 A 1 HETATM 13 O O6 NAG . . . E 5 -48.967 -2.183 -25.735 1 54.35 ? O6 NAG 1201 A 1 HETATM 14 O O7 NAG . . . E 5 -42.907 -6.103 -24.343 1 47.11 ? O7 NAG 1201 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #