data_6Z0J # _model_server_result.job_id e07ZdOyAXCgq1NJ9uym_Uw _model_server_result.datetime_utc '2024-10-10 08:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6Z0J # _exptl.entry_id 6Z0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z0J _cell.length_a 51.797 _cell.length_b 94.294 _cell.length_c 97.564 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 104 A HIS 104 1_555 E CU CU . A CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A ND1 HIS 106 A HIS 106 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 A NE2 HIS 145 A HIS 145 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A NE2 HIS 147 A HIS 147 1_555 D CU CU . A CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 A ND1 HIS 389 A HIS 389 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc6 A NE2 HIS 392 A HIS 392 1_555 E CU CU . A CU 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc7 A NE2 HIS 394 A HIS 394 1_555 D CU CU . A CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 A NE2 HIS 442 A HIS 442 1_555 D CU CU . A CU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc9 A SG CYS 443 A CYS 443 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 A NE2 HIS 444 A HIS 444 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc11 A ND1 HIS 448 A HIS 448 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc12 C CU CU . A CU 502 1_555 F O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc13 D CU CU . A CU 503 1_555 F O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Z0J _atom_sites.fract_transf_matrix[1][1] 0.019306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 1 CU CU . C 2 CU A 1 502 2 CU CU . D 2 CU A 1 503 3 CU CU . E 2 CU A 1 504 4 CU CU . F 3 HOH A 1 601 98 HOH HOH . F 3 HOH A 2 602 182 HOH HOH . F 3 HOH A 3 603 74 HOH HOH . F 3 HOH A 4 604 100 HOH HOH . F 3 HOH A 5 605 176 HOH HOH . F 3 HOH A 6 606 40 HOH HOH . F 3 HOH A 7 607 38 HOH HOH . F 3 HOH A 8 608 95 HOH HOH . F 3 HOH A 9 609 112 HOH HOH . F 3 HOH A 10 610 70 HOH HOH . F 3 HOH A 11 611 1 HOH HOH . F 3 HOH A 12 612 107 HOH HOH . F 3 HOH A 13 613 82 HOH HOH . F 3 HOH A 14 614 31 HOH HOH . F 3 HOH A 15 615 190 HOH HOH . F 3 HOH A 16 616 186 HOH HOH . F 3 HOH A 17 617 116 HOH HOH . F 3 HOH A 18 618 124 HOH HOH . F 3 HOH A 19 619 192 HOH HOH . F 3 HOH A 20 620 37 HOH HOH . F 3 HOH A 21 621 71 HOH HOH . F 3 HOH A 22 622 175 HOH HOH . F 3 HOH A 23 623 184 HOH HOH . F 3 HOH A 24 624 115 HOH HOH . F 3 HOH A 25 625 174 HOH HOH . F 3 HOH A 26 626 48 HOH HOH . F 3 HOH A 27 627 178 HOH HOH . F 3 HOH A 28 628 147 HOH HOH . F 3 HOH A 29 629 113 HOH HOH . F 3 HOH A 30 630 3 HOH HOH . F 3 HOH A 31 631 109 HOH HOH . F 3 HOH A 32 632 43 HOH HOH . F 3 HOH A 33 633 141 HOH HOH . F 3 HOH A 34 634 185 HOH HOH . F 3 HOH A 35 635 177 HOH HOH . F 3 HOH A 36 636 52 HOH HOH . F 3 HOH A 37 637 191 HOH HOH . F 3 HOH A 38 638 155 HOH HOH . F 3 HOH A 39 639 179 HOH HOH . F 3 HOH A 40 640 25 HOH HOH . F 3 HOH A 41 641 39 HOH HOH . F 3 HOH A 42 642 181 HOH HOH . F 3 HOH A 43 643 187 HOH HOH . F 3 HOH A 44 644 69 HOH HOH . F 3 HOH A 45 645 189 HOH HOH . F 3 HOH A 46 646 188 HOH HOH . F 3 HOH A 47 647 47 HOH HOH . F 3 HOH A 48 648 118 HOH HOH . F 3 HOH A 49 649 183 HOH HOH . F 3 HOH A 50 650 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.461 _atom_site.Cartn_y -17.59 _atom_site.Cartn_z -29.05 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #