data_6Z0L
#
_model_server_result.job_id            wAQFjjgzlpDJce9uwkQf1w 
_model_server_result.datetime_utc      '2025-08-31 03:55:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z0l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":101}' 
#
_entry.id    6Z0L 
#
_exptl.entry_id    6Z0L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         105.09 
_cell.angle_beta          92.49 
_cell.angle_gamma         110.15 
_cell.entry_id            6Z0L 
_cell.length_a            40.669 
_cell.length_b            49.952 
_cell.length_c            53.043 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z0L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,O,P 1 1 
C,D,K,L,M,Q,R 2 1 
E,F,N,S,T 3 1 
G,H,U,V 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ASN 2 A ASN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C GLY 49 A GLY 48 1_555 A N NH2 50 A NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C GLY 49 B GLY 48 1_555 B N NH2 50 B NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 C C ACE 1 C ACE 0 1_555 C N ASN 2 C ASN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 C C GLY 49 C GLY 48 1_555 C N NH2 50 C NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C ACE 1 D ACE 0 1_555 D N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 D C GLY 49 D GLY 48 1_555 D N NH2 50 D NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 E C ACE 1 E ACE 0 1_555 E N ASN 2 E ASN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 E C GLY 49 E GLY 48 1_555 E N NH2 50 E NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 F C GLY 49 F GLY 48 1_555 F N NH2 50 F NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 G C ACE 1 G ACE 0 1_555 G N ASN 2 G ASN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 G C GLY 49 G GLY 48 1_555 G N NH2 50 G NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 H C ACE 1 H ACE 0 1_555 H N GLY 2 H GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 H C GLY 49 H GLY 48 1_555 H N NH2 50 H NH2 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 D OE1 GLU 34 D GLU 33 1_555 M NA NA . D NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc2 M NA NA . D NA 101 1_555 R O HOH . D HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6Z0L 
_atom_sites.fract_transf_matrix[1][1]    0.024589 
_atom_sites.fract_transf_matrix[1][2]    0.009022 
_atom_sites.fract_transf_matrix[1][3]    0.00389 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021324 
_atom_sites.fract_transf_matrix[2][3]    0.00655 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 CD A 1 101 1 CD CD . 
J 3 CD A 1 102 2 CD CD . 
K 3 CD C 1 101 3 CD CD . 
L 3 CD C 1 102 5 CD CD . 
M 4 NA D 1 101 1 NA NA . 
N 3 CD E 1 101 6 CD CD . 
O 5 HOH A 1 201 77 HOH HOH . 
O 5 HOH A 2 202 60 HOH HOH . 
O 5 HOH A 3 203 59 HOH HOH . 
O 5 HOH A 4 204 36 HOH HOH . 
O 5 HOH A 5 205 6 HOH HOH . 
O 5 HOH A 6 206 38 HOH HOH . 
O 5 HOH A 7 207 93 HOH HOH . 
O 5 HOH A 8 208 13 HOH HOH . 
O 5 HOH A 9 209 74 HOH HOH . 
O 5 HOH A 10 210 43 HOH HOH . 
O 5 HOH A 11 211 57 HOH HOH . 
O 5 HOH A 12 212 42 HOH HOH . 
P 5 HOH B 1 101 72 HOH HOH . 
P 5 HOH B 2 102 79 HOH HOH . 
P 5 HOH B 3 103 45 HOH HOH . 
P 5 HOH B 4 104 52 HOH HOH . 
P 5 HOH B 5 105 80 HOH HOH . 
P 5 HOH B 6 106 68 HOH HOH . 
Q 5 HOH C 1 201 90 HOH HOH . 
Q 5 HOH C 2 202 12 HOH HOH . 
Q 5 HOH C 3 203 86 HOH HOH . 
Q 5 HOH C 4 204 19 HOH HOH . 
Q 5 HOH C 5 205 83 HOH HOH . 
Q 5 HOH C 6 206 20 HOH HOH . 
Q 5 HOH C 7 207 23 HOH HOH . 
Q 5 HOH C 8 208 41 HOH HOH . 
Q 5 HOH C 9 209 50 HOH HOH . 
Q 5 HOH C 10 210 85 HOH HOH . 
Q 5 HOH C 11 211 49 HOH HOH . 
Q 5 HOH C 12 212 46 HOH HOH . 
Q 5 HOH C 13 213 61 HOH HOH . 
Q 5 HOH C 14 214 2 HOH HOH . 
Q 5 HOH C 15 215 8 HOH HOH . 
R 5 HOH D 1 201 40 HOH HOH . 
R 5 HOH D 2 202 89 HOH HOH . 
R 5 HOH D 3 203 84 HOH HOH . 
R 5 HOH D 4 204 9 HOH HOH . 
R 5 HOH D 5 205 44 HOH HOH . 
R 5 HOH D 6 206 16 HOH HOH . 
R 5 HOH D 7 207 25 HOH HOH . 
R 5 HOH D 8 208 91 HOH HOH . 
R 5 HOH D 9 209 51 HOH HOH . 
R 5 HOH D 10 210 82 HOH HOH . 
R 5 HOH D 11 211 47 HOH HOH . 
R 5 HOH D 12 212 22 HOH HOH . 
R 5 HOH D 13 213 94 HOH HOH . 
S 5 HOH E 1 201 92 HOH HOH . 
S 5 HOH E 2 202 15 HOH HOH . 
S 5 HOH E 3 203 14 HOH HOH . 
S 5 HOH E 4 204 53 HOH HOH . 
S 5 HOH E 5 205 75 HOH HOH . 
S 5 HOH E 6 206 30 HOH HOH . 
S 5 HOH E 7 207 63 HOH HOH . 
S 5 HOH E 8 208 64 HOH HOH . 
S 5 HOH E 9 209 29 HOH HOH . 
S 5 HOH E 10 210 78 HOH HOH . 
T 5 HOH F 1 101 33 HOH HOH . 
T 5 HOH F 2 102 10 HOH HOH . 
T 5 HOH F 3 103 34 HOH HOH . 
T 5 HOH F 4 104 88 HOH HOH . 
T 5 HOH F 5 105 73 HOH HOH . 
T 5 HOH F 6 106 87 HOH HOH . 
T 5 HOH F 7 107 37 HOH HOH . 
T 5 HOH F 8 108 56 HOH HOH . 
T 5 HOH F 9 109 28 HOH HOH . 
U 5 HOH G 1 101 32 HOH HOH . 
U 5 HOH G 2 102 3 HOH HOH . 
U 5 HOH G 3 103 67 HOH HOH . 
U 5 HOH G 4 104 4 HOH HOH . 
U 5 HOH G 5 105 24 HOH HOH . 
U 5 HOH G 6 106 81 HOH HOH . 
U 5 HOH G 7 107 39 HOH HOH . 
U 5 HOH G 8 108 58 HOH HOH . 
U 5 HOH G 9 109 54 HOH HOH . 
U 5 HOH G 10 110 35 HOH HOH . 
U 5 HOH G 11 111 11 HOH HOH . 
V 5 HOH H 1 101 69 HOH HOH . 
V 5 HOH H 2 102 65 HOH HOH . 
V 5 HOH H 3 103 76 HOH HOH . 
V 5 HOH H 4 104 48 HOH HOH . 
V 5 HOH H 5 105 26 HOH HOH . 
V 5 HOH H 6 106 31 HOH HOH . 
V 5 HOH H 7 107 55 HOH HOH . 
V 5 HOH H 8 108 66 HOH HOH . 
V 5 HOH H 9 109 21 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -40.717 
_atom_site.Cartn_y               -2.141 
_atom_site.Cartn_z               -34.092 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.71 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           393 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#