data_6Z0P
#
_model_server_result.job_id            NpkcR7BPmuCgjIPjIvXBQg 
_model_server_result.datetime_utc      '2024-11-27 19:41:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1000}' 
#
_entry.id    6Z0P 
#
_exptl.entry_id    6Z0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.11 
_cell.angle_gamma         90 
_cell.entry_id            6Z0P 
_cell.length_a            44.27 
_cell.length_b            90.48 
_cell.length_c            61.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6Z0P 
_atom_sites.fract_transf_matrix[1][1]    0.022589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008722 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011052 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 1001 1001 ADP ADP . 
D 2 ADP B 1 1000 1000 ADP ADP . 
E 3 HOH A 1 1101 65 HOH HOH . 
E 3 HOH A 2 1102 25 HOH HOH . 
E 3 HOH A 3 1103 45 HOH HOH . 
E 3 HOH A 4 1104 87 HOH HOH . 
E 3 HOH A 5 1105 21 HOH HOH . 
E 3 HOH A 6 1106 51 HOH HOH . 
E 3 HOH A 7 1107 17 HOH HOH . 
E 3 HOH A 8 1108 48 HOH HOH . 
E 3 HOH A 9 1109 38 HOH HOH . 
E 3 HOH A 10 1110 13 HOH HOH . 
E 3 HOH A 11 1111 74 HOH HOH . 
E 3 HOH A 12 1112 69 HOH HOH . 
E 3 HOH A 13 1113 22 HOH HOH . 
E 3 HOH A 14 1114 42 HOH HOH . 
E 3 HOH A 15 1115 57 HOH HOH . 
E 3 HOH A 16 1116 37 HOH HOH . 
E 3 HOH A 17 1117 94 HOH HOH . 
E 3 HOH A 18 1118 3 HOH HOH . 
E 3 HOH A 19 1119 82 HOH HOH . 
E 3 HOH A 20 1120 19 HOH HOH . 
E 3 HOH A 21 1121 28 HOH HOH . 
E 3 HOH A 22 1122 96 HOH HOH . 
E 3 HOH A 23 1123 86 HOH HOH . 
E 3 HOH A 24 1124 40 HOH HOH . 
E 3 HOH A 25 1125 50 HOH HOH . 
E 3 HOH A 26 1126 9 HOH HOH . 
E 3 HOH A 27 1127 93 HOH HOH . 
F 3 HOH B 1 1101 84 HOH HOH . 
F 3 HOH B 2 1102 66 HOH HOH . 
F 3 HOH B 3 1103 54 HOH HOH . 
F 3 HOH B 4 1104 78 HOH HOH . 
F 3 HOH B 5 1105 71 HOH HOH . 
F 3 HOH B 6 1106 11 HOH HOH . 
F 3 HOH B 7 1107 91 HOH HOH . 
F 3 HOH B 8 1108 26 HOH HOH . 
F 3 HOH B 9 1109 10 HOH HOH . 
F 3 HOH B 10 1110 23 HOH HOH . 
F 3 HOH B 11 1111 79 HOH HOH . 
F 3 HOH B 12 1112 92 HOH HOH . 
F 3 HOH B 13 1113 95 HOH HOH . 
F 3 HOH B 14 1114 61 HOH HOH . 
F 3 HOH B 15 1115 12 HOH HOH . 
F 3 HOH B 16 1116 8 HOH HOH . 
F 3 HOH B 17 1117 33 HOH HOH . 
F 3 HOH B 18 1118 77 HOH HOH . 
F 3 HOH B 19 1119 62 HOH HOH . 
F 3 HOH B 20 1120 89 HOH HOH . 
F 3 HOH B 21 1121 97 HOH HOH . 
F 3 HOH B 22 1122 6 HOH HOH . 
F 3 HOH B 23 1123 76 HOH HOH . 
F 3 HOH B 24 1124 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 2 13.228 -2.459 25.264 1 16.91 ? PB ADP 1000 B 1 
HETATM 2 O O1B ADP . . . D 2 13.076 -2.724 23.788 1 17.82 ? O1B ADP 1000 B 1 
HETATM 3 O O2B ADP . . . D 2 12.326 -1.358 25.757 1 17.28 ? O2B ADP 1000 B 1 
HETATM 4 O O3B ADP . . . D 2 14.664 -2.256 25.678 1 17.82 ? O3B ADP 1000 B 1 
HETATM 5 P PA ADP . . . D 2 11.601 -4.087 27.095 1 18.55 ? PA ADP 1000 B 1 
HETATM 6 O O1A ADP . . . D 2 10.288 -4.158 26.386 1 19.01 ? O1A ADP 1000 B 1 
HETATM 7 O O2A ADP . . . D 2 11.753 -3.117 28.221 1 19.03 ? O2A ADP 1000 B 1 
HETATM 8 O O3A ADP . . . D 2 12.744 -3.805 26.009 1 18.23 ? O3A ADP 1000 B 1 
HETATM 9 O O5' ADP . . . D 2 12.002 -5.553 27.598 1 19.07 ? O5' ADP 1000 B 1 
HETATM 10 C C5' ADP . . . D 2 11.947 -6.657 26.666 1 20.31 ? C5' ADP 1000 B 1 
HETATM 11 C C4' ADP . . . D 2 11.201 -7.802 27.303 1 20.94 ? C4' ADP 1000 B 1 
HETATM 12 O O4' ADP . . . D 2 12.024 -8.377 28.352 1 21.55 ? O4' ADP 1000 B 1 
HETATM 13 C C3' ADP . . . D 2 9.868 -7.442 27.973 1 21.45 ? C3' ADP 1000 B 1 
HETATM 14 O O3' ADP . . . D 2 8.921 -8.492 27.819 1 21.09 ? O3' ADP 1000 B 1 
HETATM 15 C C2' ADP . . . D 2 10.275 -7.246 29.436 1 21.51 ? C2' ADP 1000 B 1 
HETATM 16 O O2' ADP . . . D 2 9.204 -7.453 30.332 1 21.11 ? O2' ADP 1000 B 1 
HETATM 17 C C1' ADP . . . D 2 11.352 -8.316 29.588 1 21.94 ? C1' ADP 1000 B 1 
HETATM 18 N N9 ADP . . . D 2 12.329 -8.026 30.632 1 22.66 ? N9 ADP 1000 B 1 
HETATM 19 C C8 ADP . . . D 2 13.263 -7.02 30.624 1 23.12 ? C8 ADP 1000 B 1 
HETATM 20 N N7 ADP . . . D 2 14.011 -6.994 31.699 1 23.36 ? N7 ADP 1000 B 1 
HETATM 21 C C5 ADP . . . D 2 13.547 -8.053 32.466 1 23.03 ? C5 ADP 1000 B 1 
HETATM 22 C C6 ADP . . . D 2 13.933 -8.553 33.726 1 23.18 ? C6 ADP 1000 B 1 
HETATM 23 N N6 ADP . . . D 2 14.914 -8.031 34.46 1 22.29 ? N6 ADP 1000 B 1 
HETATM 24 N N1 ADP . . . D 2 13.26 -9.626 34.207 1 23.19 ? N1 ADP 1000 B 1 
HETATM 25 C C2 ADP . . . D 2 12.273 -10.146 33.466 1 22.58 ? C2 ADP 1000 B 1 
HETATM 26 N N3 ADP . . . D 2 11.825 -9.762 32.274 1 22.89 ? N3 ADP 1000 B 1 
HETATM 27 C C4 ADP . . . D 2 12.507 -8.697 31.82 1 23.13 ? C4 ADP 1000 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#