data_6Z0Z # _model_server_result.job_id KgeN5XvdH9wMqXEQJQa7Ag _model_server_result.datetime_utc '2024-10-15 18:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6Z0Z # _exptl.entry_id 6Z0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 662.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-fluoro-,3',3'-c-di-AMP" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z0Z _cell.length_a 67.174 _cell.length_b 67.174 _cell.length_c 136.047 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_557 -y,-x,-z+5/2 0 -1 0 -1 0 0 0 0 -1 0 0 340.1175 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 F2 N10 O10 P2' _chem_comp.formula_weight 662.394 _chem_comp.id M8T _chem_comp.mon_nstd_flag . _chem_comp.name "2'-fluoro-,3',3'-c-di-AMP" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N5 M8T doub 218 n y C10 N4 M8T sing 219 n y F6 C16 M8T sing 220 n n N5 C11 M8T sing 221 n y N4 C13 M8T doub 222 n y C16 C17 M8T sing 223 n n C16 C15 M8T sing 224 n n C11 N6 M8T sing 225 n y C11 C12 M8T doub 226 n y C17 N6 M8T sing 227 n n C17 O5 M8T sing 228 n n O P M8T doub 229 n n C13 C12 M8T sing 230 n y C13 N9 M8T sing 231 n n N6 C14 M8T sing 232 n y O3 P M8T sing 233 n n O7 C15 M8T sing 234 n n O7 P M8T sing 235 n n O5 C18 M8T sing 236 n n C12 N7 M8T sing 237 n y C15 C18 M8T sing 238 n n P O2 M8T sing 239 n n C18 C19 M8T sing 240 n n C14 N7 M8T doub 241 n y O2 C9 M8T sing 242 n n C19 O8 M8T sing 243 n n C9 C8 M8T sing 244 n n O8 P1 M8T sing 245 n n N3 C4 M8T doub 246 n y N3 C2 M8T sing 247 n y C4 N2 M8T sing 248 n y C8 C5 M8T sing 249 n n C8 O1 M8T sing 250 n n N10 C3 M8T sing 251 n n P1 O10 M8T sing 252 n n P1 O4 M8T doub 253 n n P1 O22 M8T sing 254 n n C5 O10 M8T sing 255 n n C5 C6 M8T sing 256 n n C2 C3 M8T doub 257 n y C2 C1 M8T sing 258 n y O1 C7 M8T sing 259 n n N2 C7 M8T sing 260 n n N2 C1 M8T sing 261 n y C3 N M8T sing 262 n y C7 C6 M8T sing 263 n n C1 N1 M8T doub 264 n y C6 F9 M8T sing 265 n n N C M8T doub 266 n y N1 C M8T sing 267 n y C H M8T sing 268 n n C10 H10 M8T sing 269 n n C14 H14 M8T sing 270 n n C15 H15 M8T sing 271 n n C16 H16 M8T sing 272 n n C17 H17 M8T sing 273 n n C18 H18 M8T sing 274 n n C19 H191 M8T sing 275 n n C19 H192 M8T sing 276 n n C4 H4 M8T sing 277 n n C5 H5 M8T sing 278 n n C6 H6 M8T sing 279 n n C7 H7 M8T sing 280 n n C8 H8 M8T sing 281 n n C9 H91 M8T sing 282 n n C9 H92 M8T sing 283 n n N9 HN9 M8T sing 284 n n N9 H1 M8T sing 285 n n O22 H2 M8T sing 286 n n O3 H3 M8T sing 287 n n N10 H111 M8T sing 288 n n N10 H9 M8T sing 289 n n # _atom_sites.entry_id 6Z0Z _atom_sites.fract_transf_matrix[1][1] 0.014887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M8T A 1 401 1 M8T sdf . C 3 HOH A 1 501 107 HOH HOH . C 3 HOH A 2 502 59 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 29 HOH HOH . C 3 HOH A 5 505 9 HOH HOH . C 3 HOH A 6 506 21 HOH HOH . C 3 HOH A 7 507 99 HOH HOH . C 3 HOH A 8 508 40 HOH HOH . C 3 HOH A 9 509 81 HOH HOH . C 3 HOH A 10 510 2 HOH HOH . C 3 HOH A 11 511 20 HOH HOH . C 3 HOH A 12 512 56 HOH HOH . C 3 HOH A 13 513 12 HOH HOH . C 3 HOH A 14 514 105 HOH HOH . C 3 HOH A 15 515 4 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 84 HOH HOH . C 3 HOH A 18 518 26 HOH HOH . C 3 HOH A 19 519 106 HOH HOH . C 3 HOH A 20 520 25 HOH HOH . C 3 HOH A 21 521 18 HOH HOH . C 3 HOH A 22 522 1 HOH HOH . C 3 HOH A 23 523 73 HOH HOH . C 3 HOH A 24 524 54 HOH HOH . C 3 HOH A 25 525 31 HOH HOH . C 3 HOH A 26 526 89 HOH HOH . C 3 HOH A 27 527 11 HOH HOH . C 3 HOH A 28 528 17 HOH HOH . C 3 HOH A 29 529 5 HOH HOH . C 3 HOH A 30 530 52 HOH HOH . C 3 HOH A 31 531 82 HOH HOH . C 3 HOH A 32 532 65 HOH HOH . C 3 HOH A 33 533 27 HOH HOH . C 3 HOH A 34 534 10 HOH HOH . C 3 HOH A 35 535 14 HOH HOH . C 3 HOH A 36 536 97 HOH HOH . C 3 HOH A 37 537 110 HOH HOH . C 3 HOH A 38 538 60 HOH HOH . C 3 HOH A 39 539 70 HOH HOH . C 3 HOH A 40 540 45 HOH HOH . C 3 HOH A 41 541 6 HOH HOH . C 3 HOH A 42 542 34 HOH HOH . C 3 HOH A 43 543 8 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 47 HOH HOH . C 3 HOH A 46 546 39 HOH HOH . C 3 HOH A 47 547 37 HOH HOH . C 3 HOH A 48 548 62 HOH HOH . C 3 HOH A 49 549 24 HOH HOH . C 3 HOH A 50 550 28 HOH HOH . C 3 HOH A 51 551 83 HOH HOH . C 3 HOH A 52 552 86 HOH HOH . C 3 HOH A 53 553 32 HOH HOH . C 3 HOH A 54 554 22 HOH HOH . C 3 HOH A 55 555 7 HOH HOH . C 3 HOH A 56 556 38 HOH HOH . C 3 HOH A 57 557 69 HOH HOH . C 3 HOH A 58 558 85 HOH HOH . C 3 HOH A 59 559 15 HOH HOH . C 3 HOH A 60 560 13 HOH HOH . C 3 HOH A 61 561 30 HOH HOH . C 3 HOH A 62 562 111 HOH HOH . C 3 HOH A 63 563 58 HOH HOH . C 3 HOH A 64 564 42 HOH HOH . C 3 HOH A 65 565 75 HOH HOH . C 3 HOH A 66 566 33 HOH HOH . C 3 HOH A 67 567 41 HOH HOH . C 3 HOH A 68 568 101 HOH HOH . C 3 HOH A 69 569 88 HOH HOH . C 3 HOH A 70 570 19 HOH HOH . C 3 HOH A 71 571 43 HOH HOH . C 3 HOH A 72 572 71 HOH HOH . C 3 HOH A 73 573 109 HOH HOH . C 3 HOH A 74 574 63 HOH HOH . C 3 HOH A 75 575 35 HOH HOH . C 3 HOH A 76 576 91 HOH HOH . C 3 HOH A 77 577 95 HOH HOH . C 3 HOH A 78 578 66 HOH HOH . C 3 HOH A 79 579 100 HOH HOH . C 3 HOH A 80 580 104 HOH HOH . C 3 HOH A 81 581 53 HOH HOH . C 3 HOH A 82 582 96 HOH HOH . C 3 HOH A 83 583 93 HOH HOH . C 3 HOH A 84 584 108 HOH HOH . C 3 HOH A 85 585 112 HOH HOH . C 3 HOH A 86 586 48 HOH HOH . C 3 HOH A 87 587 51 HOH HOH . C 3 HOH A 88 588 79 HOH HOH . C 3 HOH A 89 589 90 HOH HOH . C 3 HOH A 90 590 50 HOH HOH . C 3 HOH A 91 591 102 HOH HOH . C 3 HOH A 92 592 67 HOH HOH . C 3 HOH A 93 593 36 HOH HOH . C 3 HOH A 94 594 92 HOH HOH . C 3 HOH A 95 595 103 HOH HOH . C 3 HOH A 96 596 74 HOH HOH . C 3 HOH A 97 597 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N M8T . . . B 2 11.635 -13.603 174.129 0.5 38.33 ? N M8T 401 A 1 HETATM 2 C C M8T . . . B 2 10.954 -12.768 174.937 0.5 36.09 ? C M8T 401 A 1 HETATM 3 O O M8T . . . B 2 7.765 -10.512 167.362 0.5 37.73 ? O M8T 401 A 1 HETATM 4 C C1 M8T . . . B 2 9.348 -12.261 173.303 0.5 35.31 ? C1 M8T 401 A 1 HETATM 5 C C10 M8T . . . B 2 12.787 -11.141 165.406 0.5 36.49 ? C10 M8T 401 A 1 HETATM 6 C C11 M8T . . . B 2 12.284 -9.441 166.946 0.5 35.29 ? C11 M8T 401 A 1 HETATM 7 C C12 M8T . . . B 2 13.134 -10.103 167.942 0.5 35 ? C12 M8T 401 A 1 HETATM 8 C C13 M8T . . . B 2 13.803 -11.358 167.527 0.5 32.05 ? C13 M8T 401 A 1 HETATM 9 C C14 M8T . . . B 2 12.267 -8.283 168.791 0.5 35.7 ? C14 M8T 401 A 1 HETATM 10 C C15 M8T . . . B 2 8.798 -7.804 167.891 0.5 36.62 ? C15 M8T 401 A 1 HETATM 11 C C16 M8T . . . B 2 9.558 -8.089 166.618 0.5 38.6 ? C16 M8T 401 A 1 HETATM 12 C C17 M8T . . . B 2 10.875 -7.381 166.882 0.5 32.17 ? C17 M8T 401 A 1 HETATM 13 C C18 M8T . . . B 2 9.194 -6.362 168.161 0.5 35.2 ? C18 M8T 401 A 1 HETATM 14 C C19 M8T . . . B 2 9.012 -5.957 169.615 0.5 37.12 ? C19 M8T 401 A 1 HETATM 15 C C2 M8T . . . B 2 10.035 -13.153 172.362 0.5 35.01 ? C2 M8T 401 A 1 HETATM 16 C C3 M8T . . . B 2 11.249 -13.844 172.856 0.5 32.54 ? C3 M8T 401 A 1 HETATM 17 C C4 M8T . . . B 2 8.284 -12.26 171.404 0.5 35.24 ? C4 M8T 401 A 1 HETATM 18 C C5 M8T . . . B 2 7.787 -8.749 172.172 0.5 36.64 ? C5 M8T 401 A 1 HETATM 19 C C6 M8T . . . B 2 8.058 -9.483 173.463 0.5 38.29 ? C6 M8T 401 A 1 HETATM 20 C C7 M8T . . . B 2 7.332 -10.799 173.238 0.5 32.18 ? C7 M8T 401 A 1 HETATM 21 C C8 M8T . . . B 2 6.349 -9.152 171.888 0.5 35.15 ? C8 M8T 401 A 1 HETATM 22 C C9 M8T . . . B 2 5.965 -8.994 170.425 0.5 38.02 ? C9 M8T 401 A 1 HETATM 23 F F6 M8T . . . B 2 8.915 -7.534 165.549 0.5 36.88 ? F6 M8T 401 A 1 HETATM 24 F F9 M8T . . . B 2 7.524 -8.81 174.524 0.5 36.63 ? F9 M8T 401 A 1 HETATM 25 N N1 M8T . . . B 2 9.847 -12.113 174.551 0.5 32.13 ? N1 M8T 401 A 1 HETATM 26 N N2 M8T . . . B 2 8.298 -11.761 172.655 0.5 32.26 ? N2 M8T 401 A 1 HETATM 27 N N3 M8T . . . B 2 9.33 -13.108 171.216 0.5 36.9 ? N3 M8T 401 A 1 HETATM 28 N N4 M8T . . . B 2 13.582 -11.801 166.27 0.5 38.31 ? N4 M8T 401 A 1 HETATM 29 N N5 M8T . . . B 2 12.153 -9.999 165.721 0.5 32.45 ? N5 M8T 401 A 1 HETATM 30 N N6 M8T . . . B 2 11.798 -8.345 167.53 0.5 32.32 ? N6 M8T 401 A 1 HETATM 31 N N7 M8T . . . B 2 13.081 -9.341 169.051 0.5 36.91 ? N7 M8T 401 A 1 HETATM 32 N N9 M8T . . . B 2 14.608 -12.042 168.374 0.5 34.7 ? N9 M8T 401 A 1 HETATM 33 O O1 M8T . . . B 2 6.259 -10.515 172.329 0.5 33.31 ? O1 M8T 401 A 1 HETATM 34 O O10 M8T . . . B 2 8.006 -7.351 172.3 0.5 41.48 ? O10 M8T 401 A 1 HETATM 35 O O2 M8T . . . B 2 6.831 -9.769 169.601 0.5 37.74 ? O2 M8T 401 A 1 HETATM 36 O O22 M8T . . . B 2 10.483 -7.719 172.723 0.5 37.67 ? O22 M8T 401 A 1 HETATM 37 O O3 M8T . . . B 2 5.438 -9.631 167.477 0.5 36.39 ? O3 M8T 401 A 1 HETATM 38 O O4 M8T . . . B 2 9.613 -5.39 172.575 0.5 36.46 ? O4 M8T 401 A 1 HETATM 39 O O5 M8T . . . B 2 10.568 -6.283 167.753 0.5 33.26 ? O5 M8T 401 A 1 HETATM 40 O O7 M8T . . . B 2 7.404 -8.026 167.732 0.5 42.59 ? O7 M8T 401 A 1 HETATM 41 O O8 M8T . . . B 2 9.786 -6.8 170.463 0.5 37.2 ? O8 M8T 401 A 1 HETATM 42 P P M8T . . . B 2 6.844 -9.508 168.014 0.5 33.57 ? P M8T 401 A 1 HETATM 43 P P1 M8T . . . B 2 9.496 -6.799 172.045 0.5 33.97 ? P1 M8T 401 A 1 HETATM 44 N N10 M8T . . . B 2 11.948 -14.687 172.062 0.5 34.21 ? N10 M8T 401 A 1 HETATM 45 H H M8T . . . B 2 11.316 -12.618 175.947 0.5 44.38 ? H M8T 401 A 1 HETATM 46 H H10 M8T . . . B 2 12.652 -11.55 164.413 0.5 44.86 ? H10 M8T 401 A 1 HETATM 47 H H14 M8T . . . B 2 12.03 -7.499 169.499 0.5 43.91 ? H14 M8T 401 A 1 HETATM 48 H H15 M8T . . . B 2 9.029 -8.464 168.739 0.5 45.01 ? H15 M8T 401 A 1 HETATM 49 H H16 M8T . . . B 2 9.663 -9.156 166.379 0.5 47.38 ? H16 M8T 401 A 1 HETATM 50 H H17 M8T . . . B 2 11.349 -7.017 165.959 0.5 39.67 ? H17 M8T 401 A 1 HETATM 51 H H18 M8T . . . B 2 8.555 -5.66 167.607 0.5 43.31 ? H18 M8T 401 A 1 HETATM 52 H H191 M8T . . . B 2 7.958 -6.03 169.888 0.5 45.61 ? H191 M8T 401 A 1 HETATM 53 H H192 M8T . . . B 2 9.322 -4.918 169.749 0.5 45.61 ? H192 M8T 401 A 1 HETATM 54 H H4 M8T . . . B 2 7.543 -12.019 170.652 0.5 43.36 ? H4 M8T 401 A 1 HETATM 55 H H5 M8T . . . B 2 8.46 -8.999 171.34 0.5 45.04 ? H5 M8T 401 A 1 HETATM 56 H H6 M8T . . . B 2 9.126 -9.597 173.698 0.5 47.01 ? H6 M8T 401 A 1 HETATM 57 H H7 M8T . . . B 2 6.936 -11.225 174.17 0.5 39.69 ? H7 M8T 401 A 1 HETATM 58 H H8 M8T . . . B 2 5.637 -8.503 172.416 0.5 43.25 ? H8 M8T 401 A 1 HETATM 59 H H91 M8T . . . B 2 4.933 -9.318 170.279 0.5 46.7 ? H91 M8T 401 A 1 HETATM 60 H H92 M8T . . . B 2 6.031 -7.942 170.14 0.5 46.7 ? H92 M8T 401 A 1 HETATM 61 H H1 M8T . . . B 2 15.029 -12.848 168.086 0.5 42.71 ? H1 M8T 401 A 1 HETATM 62 H H111 M8T . . . B 2 11.661 -14.847 171.166 0.5 42.12 ? H111 M8T 401 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 62 #