data_6Z10 # _model_server_result.job_id YSicIBoBPT5v6wyfU86iPw _model_server_result.datetime_utc '2024-11-21 13:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":411}' # _entry.id 6Z10 # _exptl.entry_id 6Z10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.29 _cell.angle_gamma 90 _cell.entry_id 6Z10 _cell.length_a 76.839 _cell.length_b 151.003 _cell.length_c 68.211 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 7 1_555 A SG CYS 270 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 98 A CYS 91 1_555 A SG CYS 175 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 B SG CYS 30 B CYS 30 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 58 B CYS 58 1_555 B SG CYS 113 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 6Z10 _atom_sites.fract_transf_matrix[1][1] 0.013014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Q4T A 1 401 401 Q4T LI1 . D 4 OLC A 1 402 501 OLC OLC . E 4 OLC A 1 403 502 OLC OLC . F 4 OLC A 1 404 504 OLC OLC . G 4 OLC A 1 405 505 OLC OLC . H 4 OLC A 1 406 506 OLC OLC . I 4 OLC A 1 407 507 OLC OLC . J 4 OLC A 1 408 508 OLC OLC . K 4 OLC A 1 409 509 OLC OLC . L 4 OLC A 1 410 510 OLC OLC . M 4 OLC A 1 411 511 OLC OLC . N 4 OLC A 1 412 512 OLC OLC . O 4 OLC A 1 413 513 OLC OLC . P 5 SO4 A 1 414 1 SO4 SO4 . Q 6 CL A 1 415 1 CL CL . R 7 HOH A 1 501 15 HOH HOH . R 7 HOH A 2 502 123 HOH HOH . R 7 HOH A 3 503 6 HOH HOH . R 7 HOH A 4 504 2 HOH HOH . R 7 HOH A 5 505 166 HOH HOH . R 7 HOH A 6 506 90 HOH HOH . R 7 HOH A 7 507 157 HOH HOH . R 7 HOH A 8 508 160 HOH HOH . R 7 HOH A 9 509 49 HOH HOH . R 7 HOH A 10 510 1 HOH HOH . R 7 HOH A 11 511 97 HOH HOH . R 7 HOH A 12 512 158 HOH HOH . R 7 HOH A 13 513 159 HOH HOH . R 7 HOH A 14 514 82 HOH HOH . R 7 HOH A 15 515 155 HOH HOH . R 7 HOH A 16 516 93 HOH HOH . R 7 HOH A 17 517 78 HOH HOH . R 7 HOH A 18 518 98 HOH HOH . R 7 HOH A 19 519 8 HOH HOH . R 7 HOH A 20 520 164 HOH HOH . R 7 HOH A 21 521 125 HOH HOH . R 7 HOH A 22 522 4 HOH HOH . R 7 HOH A 23 523 120 HOH HOH . R 7 HOH A 24 524 161 HOH HOH . R 7 HOH A 25 525 29 HOH HOH . R 7 HOH A 26 526 101 HOH HOH . R 7 HOH A 27 527 129 HOH HOH . R 7 HOH A 28 528 122 HOH HOH . R 7 HOH A 29 529 124 HOH HOH . R 7 HOH A 30 530 27 HOH HOH . R 7 HOH A 31 531 53 HOH HOH . R 7 HOH A 32 532 80 HOH HOH . R 7 HOH A 33 533 140 HOH HOH . R 7 HOH A 34 534 141 HOH HOH . R 7 HOH A 35 535 21 HOH HOH . R 7 HOH A 36 536 117 HOH HOH . R 7 HOH A 37 537 153 HOH HOH . R 7 HOH A 38 538 84 HOH HOH . R 7 HOH A 39 539 143 HOH HOH . R 7 HOH A 40 540 144 HOH HOH . R 7 HOH A 41 541 19 HOH HOH . R 7 HOH A 42 542 41 HOH HOH . R 7 HOH A 43 543 116 HOH HOH . R 7 HOH A 44 544 121 HOH HOH . R 7 HOH A 45 545 104 HOH HOH . R 7 HOH A 46 546 147 HOH HOH . R 7 HOH A 47 547 57 HOH HOH . R 7 HOH A 48 548 55 HOH HOH . R 7 HOH A 49 549 71 HOH HOH . R 7 HOH A 50 550 151 HOH HOH . R 7 HOH A 51 551 61 HOH HOH . R 7 HOH A 52 552 62 HOH HOH . R 7 HOH A 53 553 37 HOH HOH . R 7 HOH A 54 554 28 HOH HOH . R 7 HOH A 55 555 136 HOH HOH . R 7 HOH A 56 556 156 HOH HOH . R 7 HOH A 57 557 60 HOH HOH . R 7 HOH A 58 558 139 HOH HOH . R 7 HOH A 59 559 138 HOH HOH . R 7 HOH A 60 560 111 HOH HOH . R 7 HOH A 61 561 154 HOH HOH . R 7 HOH A 62 562 99 HOH HOH . R 7 HOH A 63 563 59 HOH HOH . R 7 HOH A 64 564 24 HOH HOH . R 7 HOH A 65 565 113 HOH HOH . R 7 HOH A 66 566 58 HOH HOH . R 7 HOH A 67 567 137 HOH HOH . R 7 HOH A 68 568 35 HOH HOH . R 7 HOH A 69 569 81 HOH HOH . R 7 HOH A 70 570 135 HOH HOH . R 7 HOH A 71 571 68 HOH HOH . R 7 HOH A 72 572 16 HOH HOH . R 7 HOH A 73 573 32 HOH HOH . R 7 HOH A 74 574 40 HOH HOH . R 7 HOH A 75 575 92 HOH HOH . R 7 HOH A 76 576 150 HOH HOH . R 7 HOH A 77 577 25 HOH HOH . R 7 HOH A 78 578 88 HOH HOH . R 7 HOH A 79 579 30 HOH HOH . R 7 HOH A 80 580 75 HOH HOH . R 7 HOH A 81 581 103 HOH HOH . R 7 HOH A 82 582 39 HOH HOH . R 7 HOH A 83 583 33 HOH HOH . R 7 HOH A 84 584 54 HOH HOH . R 7 HOH A 85 585 107 HOH HOH . R 7 HOH A 86 586 85 HOH HOH . R 7 HOH A 87 587 165 HOH HOH . R 7 HOH A 88 588 5 HOH HOH . R 7 HOH A 89 589 119 HOH HOH . R 7 HOH A 90 590 44 HOH HOH . R 7 HOH A 91 591 7 HOH HOH . R 7 HOH A 92 592 31 HOH HOH . R 7 HOH A 93 593 47 HOH HOH . R 7 HOH A 94 594 83 HOH HOH . R 7 HOH A 95 595 89 HOH HOH . R 7 HOH A 96 596 14 HOH HOH . R 7 HOH A 97 597 148 HOH HOH . R 7 HOH A 98 598 65 HOH HOH . R 7 HOH A 99 599 115 HOH HOH . R 7 HOH A 100 600 38 HOH HOH . R 7 HOH A 101 601 36 HOH HOH . R 7 HOH A 102 602 13 HOH HOH . R 7 HOH A 103 603 152 HOH HOH . R 7 HOH A 104 604 9 HOH HOH . R 7 HOH A 105 605 132 HOH HOH . R 7 HOH A 106 606 94 HOH HOH . R 7 HOH A 107 607 127 HOH HOH . R 7 HOH A 108 609 63 HOH HOH . S 7 HOH B 1 201 145 HOH HOH . S 7 HOH B 2 202 162 HOH HOH . S 7 HOH B 3 203 17 HOH HOH . S 7 HOH B 4 204 146 HOH HOH . S 7 HOH B 5 205 76 HOH HOH . S 7 HOH B 6 206 142 HOH HOH . S 7 HOH B 7 207 114 HOH HOH . S 7 HOH B 8 208 102 HOH HOH . S 7 HOH B 9 209 42 HOH HOH . S 7 HOH B 10 210 163 HOH HOH . S 7 HOH B 11 211 77 HOH HOH . S 7 HOH B 12 212 70 HOH HOH . S 7 HOH B 13 213 46 HOH HOH . S 7 HOH B 14 214 3 HOH HOH . S 7 HOH B 15 215 51 HOH HOH . S 7 HOH B 16 216 109 HOH HOH . S 7 HOH B 17 217 20 HOH HOH . S 7 HOH B 18 218 105 HOH HOH . S 7 HOH B 19 219 50 HOH HOH . S 7 HOH B 20 220 64 HOH HOH . S 7 HOH B 21 221 118 HOH HOH . S 7 HOH B 22 222 87 HOH HOH . S 7 HOH B 23 223 133 HOH HOH . S 7 HOH B 24 224 26 HOH HOH . S 7 HOH B 25 225 10 HOH HOH . S 7 HOH B 26 226 110 HOH HOH . S 7 HOH B 27 227 72 HOH HOH . S 7 HOH B 28 228 96 HOH HOH . S 7 HOH B 29 229 45 HOH HOH . S 7 HOH B 30 230 131 HOH HOH . S 7 HOH B 31 231 108 HOH HOH . S 7 HOH B 32 232 149 HOH HOH . S 7 HOH B 33 233 43 HOH HOH . S 7 HOH B 34 234 11 HOH HOH . S 7 HOH B 35 235 128 HOH HOH . S 7 HOH B 36 236 100 HOH HOH . S 7 HOH B 37 237 86 HOH HOH . S 7 HOH B 38 238 12 HOH HOH . S 7 HOH B 39 239 79 HOH HOH . S 7 HOH B 40 240 130 HOH HOH . S 7 HOH B 41 241 18 HOH HOH . S 7 HOH B 42 242 126 HOH HOH . S 7 HOH B 43 243 73 HOH HOH . S 7 HOH B 44 244 67 HOH HOH . S 7 HOH B 45 245 134 HOH HOH . S 7 HOH B 46 246 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . M 4 1.903 21.444 2.482 1 83.1 ? C18 OLC 411 A 1 HETATM 2 C C10 OLC . . . M 4 -4.244 15.161 3.499 1 84.21 ? C10 OLC 411 A 1 HETATM 3 C C9 OLC . . . M 4 -5.527 14.784 3.613 1 84.51 ? C9 OLC 411 A 1 HETATM 4 C C17 OLC . . . M 4 0.991 20.242 2.847 1 83.16 ? C17 OLC 411 A 1 HETATM 5 C C11 OLC . . . M 4 -3.387 15.222 2.258 1 83.94 ? C11 OLC 411 A 1 HETATM 6 C C8 OLC . . . M 4 -6.48 14.333 2.534 1 84.91 ? C8 OLC 411 A 1 HETATM 7 C C24 OLC . . . M 4 -14.143 8.468 2.825 1 90.22 ? C24 OLC 411 A 1 HETATM 8 C C16 OLC . . . M 4 1.249 18.993 1.962 1 83.24 ? C16 OLC 411 A 1 HETATM 9 C C12 OLC . . . M 4 -1.904 14.988 2.656 1 83.81 ? C12 OLC 411 A 1 HETATM 10 C C7 OLC . . . M 4 -7.901 14.852 2.885 1 85.53 ? C7 OLC 411 A 1 HETATM 11 C C15 OLC . . . M 4 0.897 17.685 2.721 1 83.53 ? C15 OLC 411 A 1 HETATM 12 C C13 OLC . . . M 4 -1.219 16.274 3.199 1 83.75 ? C13 OLC 411 A 1 HETATM 13 C C6 OLC . . . M 4 -8.779 13.759 3.562 1 86.15 ? C6 OLC 411 A 1 HETATM 14 C C14 OLC . . . M 4 -0.331 16.95 2.112 1 83.74 ? C14 OLC 411 A 1 HETATM 15 C C5 OLC . . . M 4 -10.271 13.858 3.133 1 86.64 ? C5 OLC 411 A 1 HETATM 16 C C4 OLC . . . M 4 -11.063 14.957 3.904 1 87.09 ? C4 OLC 411 A 1 HETATM 17 C C3 OLC . . . M 4 -12.556 14.995 3.464 1 87.59 ? C3 OLC 411 A 1 HETATM 18 C C2 OLC . . . M 4 -12.928 13.81 2.523 1 88.25 ? C2 OLC 411 A 1 HETATM 19 C C21 OLC . . . M 4 -14.733 10.85 3.677 1 89.67 ? C21 OLC 411 A 1 HETATM 20 C C1 OLC . . . M 4 -14.154 13.034 2.958 1 88.93 ? C1 OLC 411 A 1 HETATM 21 C C22 OLC . . . M 4 -15.248 9.533 3.041 1 89.96 ? C22 OLC 411 A 1 HETATM 22 O O19 OLC . . . M 4 -15.087 13.591 3.521 1 89.06 ? O19 OLC 411 A 1 HETATM 23 O O25 OLC . . . M 4 -14.777 7.211 2.496 1 90.39 ? O25 OLC 411 A 1 HETATM 24 O O23 OLC . . . M 4 -16.287 8.982 3.867 1 90.04 ? O23 OLC 411 A 1 HETATM 25 O O20 OLC . . . M 4 -14.126 11.707 2.683 1 89.4 ? O20 OLC 411 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 25 #