data_6Z15
#
_model_server_result.job_id            -xVFl-KY7tPGV-4neUsBZg 
_model_server_result.datetime_utc      '2024-11-27 02:44:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6Z15 
#
_exptl.entry_id    6Z15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Z15 
_cell.length_a            110.688 
_cell.length_b            110.688 
_cell.length_c            35.645 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C 1 1 
A,B,C 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? 0 -1 0 -1 0 0 0 0 -1 0 0 -17.8225 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                2BA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 2BA doub 1 n n 
P O2P 2BA sing 2 n n 
P O5' 2BA sing 3 n n 
P "O3'1" 2BA sing 4 n n 
O5' C5' 2BA sing 5 n n 
C5' C4' 2BA sing 6 n n 
C4' O4' 2BA sing 7 n n 
C4' C3' 2BA sing 8 n n 
O4' C1' 2BA sing 9 n n 
C3' O3' 2BA sing 10 n n 
C3' C2' 2BA sing 11 n n 
O3' P1 2BA sing 12 n n 
C2' O2' 2BA sing 13 n n 
C2' C1' 2BA sing 14 n n 
C1' N9 2BA sing 15 n n 
N9 C8 2BA sing 16 n y 
N9 C4 2BA sing 17 n y 
C8 N7 2BA doub 18 n y 
N7 C5 2BA sing 19 n y 
C5 C6 2BA doub 20 n y 
C5 C4 2BA sing 21 n y 
C6 N6 2BA sing 22 n n 
C6 N1 2BA sing 23 n y 
N1 C2 2BA doub 24 n y 
C2 N3 2BA sing 25 n y 
N3 C4 2BA doub 26 n y 
P1 O1P1 2BA doub 27 n n 
P1 O2P1 2BA sing 28 n n 
P1 "O5'1" 2BA sing 29 n n 
"O5'1" "C5'1" 2BA sing 30 n n 
"C5'1" "C4'1" 2BA sing 31 n n 
"C4'1" "O4'1" 2BA sing 32 n n 
"C4'1" "C3'1" 2BA sing 33 n n 
"O4'1" "C1'1" 2BA sing 34 n n 
"C3'1" "O3'1" 2BA sing 35 n n 
"C3'1" "C2'1" 2BA sing 36 n n 
"C2'1" "O2'1" 2BA sing 37 n n 
"C2'1" "C1'1" 2BA sing 38 n n 
"C1'1" N91 2BA sing 39 n n 
N91 C81 2BA sing 40 n y 
N91 C41 2BA sing 41 n y 
C81 N71 2BA doub 42 n y 
N71 C51 2BA sing 43 n y 
C51 C61 2BA doub 44 n y 
C51 C41 2BA sing 45 n y 
C61 N61 2BA sing 46 n n 
C61 N11 2BA sing 47 n y 
N11 C21 2BA doub 48 n y 
C21 N31 2BA sing 49 n y 
N31 C41 2BA doub 50 n y 
C5' H5' 2BA sing 51 n n 
C5' "H5'A" 2BA sing 52 n n 
C4' H4' 2BA sing 53 n n 
C3' H3' 2BA sing 54 n n 
C2' H2' 2BA sing 55 n n 
O2' HO2' 2BA sing 56 n n 
C1' H1' 2BA sing 57 n n 
C8 H8 2BA sing 58 n n 
N6 HN6 2BA sing 59 n n 
N6 HN6A 2BA sing 60 n n 
C2 H2 2BA sing 61 n n 
"C5'1" HC5' 2BA sing 62 n n 
"C5'1" HC5A 2BA sing 63 n n 
"C4'1" HC4' 2BA sing 64 n n 
"C3'1" HC3' 2BA sing 65 n n 
"C2'1" HC2' 2BA sing 66 n n 
"O2'1" HO2A 2BA sing 67 n n 
"C1'1" HC1' 2BA sing 68 n n 
C81 HC8 2BA sing 69 n n 
N61 H1N6 2BA sing 70 n n 
N61 H1NA 2BA sing 71 n n 
C21 HC2 2BA sing 72 n n 
O2P H2P 2BA sing 73 n n 
O2P1 H2OP 2BA sing 74 n n 
#
_atom_sites.entry_id                     6Z15 
_atom_sites.fract_transf_matrix[1][1]    0.009034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009034 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2BA A 1 401 1 2BA sdf . 
C 3 HOH A 1 501 26 HOH HOH . 
C 3 HOH A 2 502 10 HOH HOH . 
C 3 HOH A 3 503 5 HOH HOH . 
C 3 HOH A 4 504 18 HOH HOH . 
C 3 HOH A 5 505 3 HOH HOH . 
C 3 HOH A 6 506 21 HOH HOH . 
C 3 HOH A 7 507 31 HOH HOH . 
C 3 HOH A 8 508 30 HOH HOH . 
C 3 HOH A 9 509 43 HOH HOH . 
C 3 HOH A 10 510 8 HOH HOH . 
C 3 HOH A 11 511 35 HOH HOH . 
C 3 HOH A 12 512 42 HOH HOH . 
C 3 HOH A 13 513 9 HOH HOH . 
C 3 HOH A 14 514 40 HOH HOH . 
C 3 HOH A 15 515 1 HOH HOH . 
C 3 HOH A 16 516 37 HOH HOH . 
C 3 HOH A 17 517 2 HOH HOH . 
C 3 HOH A 18 518 4 HOH HOH . 
C 3 HOH A 19 519 44 HOH HOH . 
C 3 HOH A 20 520 28 HOH HOH . 
C 3 HOH A 21 521 20 HOH HOH . 
C 3 HOH A 22 522 29 HOH HOH . 
C 3 HOH A 23 523 6 HOH HOH . 
C 3 HOH A 24 524 12 HOH HOH . 
C 3 HOH A 25 525 41 HOH HOH . 
C 3 HOH A 26 526 36 HOH HOH . 
C 3 HOH A 27 527 7 HOH HOH . 
C 3 HOH A 28 528 27 HOH HOH . 
C 3 HOH A 29 529 45 HOH HOH . 
C 3 HOH A 30 530 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 2BA . . . B 2 -22.161 20.071 -6.623 0.5 41.37 ? P 2BA 401 A 1 
HETATM 2 O O1P 2BA . . . B 2 -21.693 18.779 -6.329 0.5 40.16 ? O1P 2BA 401 A 1 
HETATM 3 O O2P 2BA . . . B 2 -23.001 20.459 -5.534 0.5 42.24 ? O2P 2BA 401 A 1 
HETATM 4 O O5' 2BA . . . B 2 -20.943 21.001 -6.762 0.5 41.11 ? O5' 2BA 401 A 1 
HETATM 5 C C5' 2BA . . . B 2 -21.139 22.361 -6.996 0.5 39.24 ? C5' 2BA 401 A 1 
HETATM 6 C C4' 2BA . . . B 2 -19.907 23.046 -7.519 0.5 39.83 ? C4' 2BA 401 A 1 
HETATM 7 O O4' 2BA . . . B 2 -18.819 22.914 -6.645 0.5 42.75 ? O4' 2BA 401 A 1 
HETATM 8 C C3' 2BA . . . B 2 -19.411 22.476 -8.798 0.5 41.22 ? C3' 2BA 401 A 1 
HETATM 9 O O3' 2BA . . . B 2 -20.064 22.983 -9.908 0.5 39.18 ? O3' 2BA 401 A 1 
HETATM 10 C C2' 2BA . . . B 2 -17.974 22.89 -8.792 0.5 44.41 ? C2' 2BA 401 A 1 
HETATM 11 O O2' 2BA . . . B 2 -17.765 24.19 -9.289 0.5 45.08 ? O2' 2BA 401 A 1 
HETATM 12 C C1' 2BA . . . B 2 -17.626 22.814 -7.35 0.5 42.71 ? C1' 2BA 401 A 1 
HETATM 13 N N9 2BA . . . B 2 -17.091 21.475 -7.206 0.5 44.76 ? N9 2BA 401 A 1 
HETATM 14 C C8 2BA . . . B 2 -17.678 20.473 -6.602 0.5 44.22 ? C8 2BA 401 A 1 
HETATM 15 N N7 2BA . . . B 2 -16.927 19.386 -6.679 0.5 44.42 ? N7 2BA 401 A 1 
HETATM 16 C C5 2BA . . . B 2 -15.85 19.696 -7.352 0.5 43.94 ? C5 2BA 401 A 1 
HETATM 17 C C6 2BA . . . B 2 -14.645 19.015 -7.792 0.5 48.11 ? C6 2BA 401 A 1 
HETATM 18 N N6 2BA . . . B 2 -14.427 17.731 -7.514 0.5 47.3 ? N6 2BA 401 A 1 
HETATM 19 N N1 2BA . . . B 2 -13.754 19.709 -8.473 0.5 49.64 ? N1 2BA 401 A 1 
HETATM 20 C C2 2BA . . . B 2 -13.935 20.979 -8.758 0.5 48.27 ? C2 2BA 401 A 1 
HETATM 21 N N3 2BA . . . B 2 -15.003 21.641 -8.387 0.5 46.88 ? N3 2BA 401 A 1 
HETATM 22 C C4 2BA . . . B 2 -15.971 21.069 -7.704 0.5 44.16 ? C4 2BA 401 A 1 
HETATM 23 P P1 2BA . . . B 2 -20.071 22.161 -11.2 0.5 40.37 ? P1 2BA 401 A 1 
HETATM 24 O O1P1 2BA . . . B 2 -18.779 21.693 -11.494 0.5 39.97 ? O1P1 2BA 401 A 1 
HETATM 25 O O2P1 2BA . . . B 2 -20.459 23 -12.289 0.5 42.14 ? O2P1 2BA 401 A 1 
HETATM 26 O "O5'1" 2BA . . . B 2 -21 20.943 -11.06 0.5 41.02 ? "O5'1" 2BA 401 A 1 
HETATM 27 C "C5'1" 2BA . . . B 2 -22.361 21.138 -10.828 0.5 39.26 ? "C5'1" 2BA 401 A 1 
HETATM 28 C "C4'1" 2BA . . . B 2 -23.046 19.906 -10.303 0.5 40.46 ? "C4'1" 2BA 401 A 1 
HETATM 29 O "O4'1" 2BA . . . B 2 -22.915 18.818 -11.178 0.5 42.75 ? "O4'1" 2BA 401 A 1 
HETATM 30 C "C3'1" 2BA . . . B 2 -22.475 19.411 -9.025 0.5 41.2 ? "C3'1" 2BA 401 A 1 
HETATM 31 O "O3'1" 2BA . . . B 2 -22.982 20.065 -7.915 0.5 39.35 ? "O3'1" 2BA 401 A 1 
HETATM 32 C "C2'1" 2BA . . . B 2 -22.89 17.975 -9.03 0.5 44.4 ? "C2'1" 2BA 401 A 1 
HETATM 33 O "O2'1" 2BA . . . B 2 -24.19 17.768 -8.533 0.5 45.07 ? "O2'1" 2BA 401 A 1 
HETATM 34 C "C1'1" 2BA . . . B 2 -22.814 17.625 -10.472 0.5 42.71 ? "C1'1" 2BA 401 A 1 
HETATM 35 N N91 2BA . . . B 2 -21.475 17.09 -10.616 0.5 44.76 ? N91 2BA 401 A 1 
HETATM 36 C C81 2BA . . . B 2 -20.474 17.678 -11.22 0.5 44.22 ? C81 2BA 401 A 1 
HETATM 37 N N71 2BA . . . B 2 -19.386 16.927 -11.144 0.5 44.42 ? N71 2BA 401 A 1 
HETATM 38 C C51 2BA . . . B 2 -19.696 15.85 -10.471 0.5 43.95 ? C51 2BA 401 A 1 
HETATM 39 C C61 2BA . . . B 2 -19.014 14.645 -10.031 0.5 48.1 ? C61 2BA 401 A 1 
HETATM 40 N N61 2BA . . . B 2 -17.73 14.427 -10.31 0.5 47.39 ? N61 2BA 401 A 1 
HETATM 41 N N11 2BA . . . B 2 -19.708 13.754 -9.35 0.5 49.56 ? N11 2BA 401 A 1 
HETATM 42 C C21 2BA . . . B 2 -20.977 13.935 -9.064 0.5 48.36 ? C21 2BA 401 A 1 
HETATM 43 N N31 2BA . . . B 2 -21.64 15.002 -9.435 0.5 46.88 ? N31 2BA 401 A 1 
HETATM 44 C C41 2BA . . . B 2 -21.068 15.971 -10.118 0.5 44.16 ? C41 2BA 401 A 1 
HETATM 45 H H5' 2BA . . . B 2 -21.448 22.843 -6.066 0.5 47.02 ? H5' 2BA 401 A 1 
HETATM 46 H "H5'A" 2BA . . . B 2 -21.95 22.486 -7.716 0.5 47.02 ? "H5'A" 2BA 401 A 1 
HETATM 47 H H4' 2BA . . . B 2 -20.134 24.11 -7.673 0.5 47.73 ? H4' 2BA 401 A 1 
HETATM 48 H H3' 2BA . . . B 2 -19.48 21.38 -8.767 0.5 49.4 ? H3' 2BA 401 A 1 
HETATM 49 H H2' 2BA . . . B 2 -17.407 22.172 -9.396 0.5 53.23 ? H2' 2BA 401 A 1 
HETATM 50 H HO2' 2BA . . . B 2 -16.855 24.462 -9.113 0.5 54.04 ? HO2' 2BA 401 A 1 
HETATM 51 H H1' 2BA . . . B 2 -16.901 23.59 -7.067 0.5 51.19 ? H1' 2BA 401 A 1 
HETATM 52 H H8 2BA . . . B 2 -18.639 20.525 -6.106 0.5 53.01 ? H8 2BA 401 A 1 
HETATM 53 H HN6 2BA . . . B 2 -15.074 17.233 -7.02 0.5 56.7 ? HN6 2BA 401 A 1 
HETATM 54 H H2 2BA . . . B 2 -13.175 21.5 -9.325 0.5 57.86 ? H2 2BA 401 A 1 
HETATM 55 H HC5' 2BA . . . B 2 -22.842 21.444 -11.759 0.5 47.05 ? HC5' 2BA 401 A 1 
HETATM 56 H HC5A 2BA . . . B 2 -22.488 21.951 -10.11 0.5 47.05 ? HC5A 2BA 401 A 1 
HETATM 57 H HC4' 2BA . . . B 2 -24.11 20.133 -10.148 0.5 48.49 ? HC4' 2BA 401 A 1 
HETATM 58 H HC3' 2BA . . . B 2 -21.379 19.48 -9.056 0.5 49.38 ? HC3' 2BA 401 A 1 
HETATM 59 H HC2' 2BA . . . B 2 -22.172 17.407 -8.425 0.5 53.22 ? HC2' 2BA 401 A 1 
HETATM 60 H HO2A 2BA . . . B 2 -24.336 18.313 -7.75 0.5 54.02 ? HO2A 2BA 401 A 1 
HETATM 61 H HC1' 2BA . . . B 2 -23.592 16.9 -10.749 0.5 51.19 ? HC1' 2BA 401 A 1 
HETATM 62 H HC8 2BA . . . B 2 -20.527 18.639 -11.717 0.5 53 ? HC8 2BA 401 A 1 
HETATM 63 H H1N6 2BA . . . B 2 -17.305 13.628 -10.009 0.5 56.81 ? H1N6 2BA 401 A 1 
HETATM 64 H HC2 2BA . . . B 2 -21.498 13.175 -8.497 0.5 57.97 ? HC2 2BA 401 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           64 
#