data_6Z1H # _model_server_result.job_id TnYMqIAaTWjW19oVXHb3tQ _model_server_result.datetime_utc '2024-11-09 02:49:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 6Z1H # _exptl.entry_id 6Z1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.061 _cell.angle_gamma 90 _cell.entry_id 6Z1H _cell.length_a 52.263 _cell.length_b 80.668 _cell.length_c 97.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6Z1H _atom_sites.fract_transf_matrix[1][1] 0.019134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003395 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 501 501 GOL GOL . F 5 SO4 A 1 502 2 SO4 SO4 . G 6 IPA B 1 601 601 IPA IPA . H 4 GOL B 1 602 501 GOL GOL . I 7 HOH A 1 601 30 HOH HOH . I 7 HOH A 2 602 7 HOH HOH . I 7 HOH A 3 603 10 HOH HOH . I 7 HOH A 4 604 2 HOH HOH . I 7 HOH A 5 605 41 HOH HOH . I 7 HOH A 6 606 19 HOH HOH . I 7 HOH A 7 607 39 HOH HOH . I 7 HOH A 8 608 43 HOH HOH . I 7 HOH A 9 609 22 HOH HOH . I 7 HOH A 10 610 6 HOH HOH . I 7 HOH A 11 611 23 HOH HOH . I 7 HOH A 12 612 21 HOH HOH . I 7 HOH A 13 613 15 HOH HOH . I 7 HOH A 14 614 31 HOH HOH . J 7 HOH B 1 701 29 HOH HOH . J 7 HOH B 2 702 16 HOH HOH . J 7 HOH B 3 703 42 HOH HOH . J 7 HOH B 4 704 38 HOH HOH . J 7 HOH B 5 705 28 HOH HOH . J 7 HOH B 6 706 11 HOH HOH . J 7 HOH B 7 707 5 HOH HOH . J 7 HOH B 8 708 9 HOH HOH . J 7 HOH B 9 709 17 HOH HOH . J 7 HOH B 10 710 13 HOH HOH . J 7 HOH B 11 711 25 HOH HOH . J 7 HOH B 12 712 37 HOH HOH . J 7 HOH B 13 713 4 HOH HOH . J 7 HOH B 14 714 18 HOH HOH . J 7 HOH B 15 715 3 HOH HOH . J 7 HOH B 16 716 8 HOH HOH . J 7 HOH B 17 717 14 HOH HOH . J 7 HOH B 18 718 36 HOH HOH . J 7 HOH B 19 719 34 HOH HOH . J 7 HOH B 20 720 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 46.142 33.476 33.86 1 52.36 ? C1 GOL 602 B 1 HETATM 2 O O1 GOL . . . H 4 47.326 33.046 34.47 1 51.37 ? O1 GOL 602 B 1 HETATM 3 C C2 GOL . . . H 4 45.308 34.153 34.965 1 57.81 ? C2 GOL 602 B 1 HETATM 4 O O2 GOL . . . H 4 46.117 34.648 35.977 1 59.76 ? O2 GOL 602 B 1 HETATM 5 C C3 GOL . . . H 4 44.518 35.276 34.245 1 60.23 ? C3 GOL 602 B 1 HETATM 6 O O3 GOL . . . H 4 43.424 34.675 33.618 1 59.13 ? O3 GOL 602 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #