data_6Z1J # _model_server_result.job_id Aw1vBfrqwcD1DRiXdr41JA _model_server_result.datetime_utc '2024-11-16 21:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":409}' # _entry.id 6Z1J # _exptl.entry_id 6Z1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z1J _cell.length_a 99.89 _cell.length_b 99.89 _cell.length_c 238.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 Q N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 N FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 N FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 N FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 N FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 N FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 N FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 467 n n N1 CM1 LDA sing 468 n n N1 CM2 LDA sing 469 n n N1 C1 LDA sing 470 n n CM1 HM11 LDA sing 471 n n CM1 HM12 LDA sing 472 n n CM1 HM13 LDA sing 473 n n CM2 HM21 LDA sing 474 n n CM2 HM22 LDA sing 475 n n CM2 HM23 LDA sing 476 n n C1 C2 LDA sing 477 n n C1 H11 LDA sing 478 n n C1 H12 LDA sing 479 n n C2 C3 LDA sing 480 n n C2 H21 LDA sing 481 n n C2 H22 LDA sing 482 n n C3 C4 LDA sing 483 n n C3 H31 LDA sing 484 n n C3 H32 LDA sing 485 n n C4 C5 LDA sing 486 n n C4 H41 LDA sing 487 n n C4 H42 LDA sing 488 n n C5 C6 LDA sing 489 n n C5 H51 LDA sing 490 n n C5 H52 LDA sing 491 n n C6 C7 LDA sing 492 n n C6 H61 LDA sing 493 n n C6 H62 LDA sing 494 n n C7 C8 LDA sing 495 n n C7 H71 LDA sing 496 n n C7 H72 LDA sing 497 n n C8 C9 LDA sing 498 n n C8 H81 LDA sing 499 n n C8 H82 LDA sing 500 n n C9 C10 LDA sing 501 n n C9 H91 LDA sing 502 n n C9 H92 LDA sing 503 n n C10 C11 LDA sing 504 n n C10 H101 LDA sing 505 n n C10 H102 LDA sing 506 n n C11 C12 LDA sing 507 n n C11 H111 LDA sing 508 n n C11 H112 LDA sing 509 n n C12 H121 LDA sing 510 n n C12 H122 LDA sing 511 n n C12 H123 LDA sing 512 n n # _atom_sites.entry_id 6Z1J _atom_sites.fract_transf_matrix[1][1] 0.010011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 BCL L 1 301 301 BCL BCL . F 5 BCL L 1 302 302 BCL BCL . G 6 BPH L 1 303 402 BPH BPH . H 7 UNL L 1 304 805 UNL UNL . I 7 UNL L 1 305 807 UNL UNL . J 8 OLC L 1 306 1 OLC OLC . K 5 BCL M 1 401 303 BCL BCL . L 5 BCL M 1 402 304 BCL BCL . M 6 BPH M 1 403 401 BPH BPH . N 9 FE M 1 404 500 FE FE . O 10 U10 M 1 405 501 U10 U10 . P 11 SPN M 1 406 600 SPN SPN . Q 4 LDA M 1 407 701 LDA LDA . R 4 LDA M 1 408 705 LDA LDA . S 4 LDA M 1 409 709 LDA LDA . T 7 UNL M 1 410 800 UNL UNL . U 7 UNL M 1 411 809 UNL UNL . V 7 UNL M 1 412 810 UNL UNL . W 12 PO4 M 1 413 2 PO4 PO4 . X 13 NKP M 1 414 1 NKP NKP . Y 13 NKP M 1 415 2 NKP NKP . Z 14 HOH H 1 401 162 HOH HOH . Z 14 HOH H 2 402 112 HOH HOH . Z 14 HOH H 3 403 182 HOH HOH . Z 14 HOH H 4 404 76 HOH HOH . Z 14 HOH H 5 405 142 HOH HOH . Z 14 HOH H 6 406 124 HOH HOH . Z 14 HOH H 7 407 120 HOH HOH . Z 14 HOH H 8 408 2 HOH HOH . Z 14 HOH H 9 409 151 HOH HOH . Z 14 HOH H 10 410 137 HOH HOH . Z 14 HOH H 11 411 50 HOH HOH . Z 14 HOH H 12 412 70 HOH HOH . Z 14 HOH H 13 413 135 HOH HOH . Z 14 HOH H 14 414 129 HOH HOH . Z 14 HOH H 15 415 42 HOH HOH . Z 14 HOH H 16 416 73 HOH HOH . Z 14 HOH H 17 417 165 HOH HOH . Z 14 HOH H 18 418 95 HOH HOH . Z 14 HOH H 19 419 28 HOH HOH . Z 14 HOH H 20 420 40 HOH HOH . Z 14 HOH H 21 421 66 HOH HOH . Z 14 HOH H 22 422 98 HOH HOH . Z 14 HOH H 23 423 123 HOH HOH . Z 14 HOH H 24 424 47 HOH HOH . Z 14 HOH H 25 425 181 HOH HOH . Z 14 HOH H 26 426 69 HOH HOH . Z 14 HOH H 27 427 71 HOH HOH . Z 14 HOH H 28 428 152 HOH HOH . Z 14 HOH H 29 429 21 HOH HOH . Z 14 HOH H 30 430 100 HOH HOH . Z 14 HOH H 31 431 93 HOH HOH . Z 14 HOH H 32 432 37 HOH HOH . Z 14 HOH H 33 433 58 HOH HOH . Z 14 HOH H 34 434 88 HOH HOH . Z 14 HOH H 35 435 81 HOH HOH . Z 14 HOH H 36 436 136 HOH HOH . Z 14 HOH H 37 437 176 HOH HOH . Z 14 HOH H 38 438 83 HOH HOH . Z 14 HOH H 39 439 72 HOH HOH . Z 14 HOH H 40 440 61 HOH HOH . Z 14 HOH H 41 441 86 HOH HOH . Z 14 HOH H 42 442 64 HOH HOH . Z 14 HOH H 43 443 31 HOH HOH . Z 14 HOH H 44 444 154 HOH HOH . Z 14 HOH H 45 445 155 HOH HOH . Z 14 HOH H 46 446 90 HOH HOH . Z 14 HOH H 47 447 45 HOH HOH . Z 14 HOH H 48 448 179 HOH HOH . Z 14 HOH H 49 449 134 HOH HOH . Z 14 HOH H 50 450 48 HOH HOH . Z 14 HOH H 51 451 34 HOH HOH . Z 14 HOH H 52 452 51 HOH HOH . Z 14 HOH H 53 453 147 HOH HOH . Z 14 HOH H 54 454 139 HOH HOH . Z 14 HOH H 55 455 138 HOH HOH . Z 14 HOH H 56 456 105 HOH HOH . Z 14 HOH H 57 457 132 HOH HOH . Z 14 HOH H 58 458 166 HOH HOH . Z 14 HOH H 59 459 130 HOH HOH . Z 14 HOH H 60 460 127 HOH HOH . Z 14 HOH H 61 461 23 HOH HOH . Z 14 HOH H 62 462 146 HOH HOH . Z 14 HOH H 63 463 148 HOH HOH . Z 14 HOH H 64 464 96 HOH HOH . Z 14 HOH H 65 465 35 HOH HOH . Z 14 HOH H 66 466 44 HOH HOH . Z 14 HOH H 67 467 156 HOH HOH . Z 14 HOH H 68 468 117 HOH HOH . Z 14 HOH H 69 469 26 HOH HOH . Z 14 HOH H 70 470 118 HOH HOH . Z 14 HOH H 71 471 173 HOH HOH . Z 14 HOH H 72 472 161 HOH HOH . Z 14 HOH H 73 473 103 HOH HOH . Z 14 HOH H 74 474 144 HOH HOH . Z 14 HOH H 75 475 65 HOH HOH . Z 14 HOH H 76 476 104 HOH HOH . Z 14 HOH H 77 477 177 HOH HOH . Z 14 HOH H 78 478 169 HOH HOH . AA 14 HOH L 1 401 178 HOH HOH . AA 14 HOH L 2 402 160 HOH HOH . AA 14 HOH L 3 403 143 HOH HOH . AA 14 HOH L 4 404 170 HOH HOH . AA 14 HOH L 5 405 97 HOH HOH . AA 14 HOH L 6 406 56 HOH HOH . AA 14 HOH L 7 407 115 HOH HOH . AA 14 HOH L 8 408 6 HOH HOH . AA 14 HOH L 9 409 18 HOH HOH . AA 14 HOH L 10 410 128 HOH HOH . AA 14 HOH L 11 411 24 HOH HOH . AA 14 HOH L 12 412 101 HOH HOH . AA 14 HOH L 13 413 20 HOH HOH . AA 14 HOH L 14 414 158 HOH HOH . AA 14 HOH L 15 415 43 HOH HOH . AA 14 HOH L 16 416 4 HOH HOH . AA 14 HOH L 17 417 68 HOH HOH . AA 14 HOH L 18 418 60 HOH HOH . AA 14 HOH L 19 419 16 HOH HOH . AA 14 HOH L 20 420 63 HOH HOH . AA 14 HOH L 21 421 8 HOH HOH . AA 14 HOH L 22 422 184 HOH HOH . AA 14 HOH L 23 423 3 HOH HOH . AA 14 HOH L 24 424 107 HOH HOH . AA 14 HOH L 25 425 10 HOH HOH . AA 14 HOH L 26 426 52 HOH HOH . AA 14 HOH L 27 427 36 HOH HOH . AA 14 HOH L 28 428 17 HOH HOH . AA 14 HOH L 29 429 27 HOH HOH . AA 14 HOH L 30 430 140 HOH HOH . AA 14 HOH L 31 431 38 HOH HOH . AA 14 HOH L 32 432 75 HOH HOH . AA 14 HOH L 33 433 62 HOH HOH . AA 14 HOH L 34 434 1 HOH HOH . AA 14 HOH L 35 435 102 HOH HOH . AA 14 HOH L 36 436 111 HOH HOH . AA 14 HOH L 37 437 32 HOH HOH . AA 14 HOH L 38 438 19 HOH HOH . AA 14 HOH L 39 439 180 HOH HOH . AA 14 HOH L 40 440 183 HOH HOH . AA 14 HOH L 41 441 11 HOH HOH . AA 14 HOH L 42 442 110 HOH HOH . AA 14 HOH L 43 443 33 HOH HOH . AA 14 HOH L 44 444 94 HOH HOH . AA 14 HOH L 45 445 119 HOH HOH . AA 14 HOH L 46 446 174 HOH HOH . AA 14 HOH L 47 447 185 HOH HOH . AA 14 HOH L 48 448 131 HOH HOH . AA 14 HOH L 49 449 175 HOH HOH . AA 14 HOH L 50 450 150 HOH HOH . BA 14 HOH M 1 501 125 HOH HOH . BA 14 HOH M 2 502 39 HOH HOH . BA 14 HOH M 3 503 106 HOH HOH . BA 14 HOH M 4 504 92 HOH HOH . BA 14 HOH M 5 505 108 HOH HOH . BA 14 HOH M 6 506 121 HOH HOH . BA 14 HOH M 7 507 67 HOH HOH . BA 14 HOH M 8 508 114 HOH HOH . BA 14 HOH M 9 509 171 HOH HOH . BA 14 HOH M 10 510 89 HOH HOH . BA 14 HOH M 11 511 49 HOH HOH . BA 14 HOH M 12 512 172 HOH HOH . BA 14 HOH M 13 513 53 HOH HOH . BA 14 HOH M 14 514 157 HOH HOH . BA 14 HOH M 15 515 79 HOH HOH . BA 14 HOH M 16 516 159 HOH HOH . BA 14 HOH M 17 517 55 HOH HOH . BA 14 HOH M 18 518 167 HOH HOH . BA 14 HOH M 19 519 85 HOH HOH . BA 14 HOH M 20 520 15 HOH HOH . BA 14 HOH M 21 521 149 HOH HOH . BA 14 HOH M 22 522 57 HOH HOH . BA 14 HOH M 23 523 109 HOH HOH . BA 14 HOH M 24 524 82 HOH HOH . BA 14 HOH M 25 525 74 HOH HOH . BA 14 HOH M 26 526 78 HOH HOH . BA 14 HOH M 27 527 29 HOH HOH . BA 14 HOH M 28 528 9 HOH HOH . BA 14 HOH M 29 529 54 HOH HOH . BA 14 HOH M 30 530 168 HOH HOH . BA 14 HOH M 31 531 22 HOH HOH . BA 14 HOH M 32 532 59 HOH HOH . BA 14 HOH M 33 533 153 HOH HOH . BA 14 HOH M 34 534 7 HOH HOH . BA 14 HOH M 35 535 14 HOH HOH . BA 14 HOH M 36 536 87 HOH HOH . BA 14 HOH M 37 537 12 HOH HOH . BA 14 HOH M 38 538 30 HOH HOH . BA 14 HOH M 39 539 80 HOH HOH . BA 14 HOH M 40 540 77 HOH HOH . BA 14 HOH M 41 541 141 HOH HOH . BA 14 HOH M 42 542 46 HOH HOH . BA 14 HOH M 43 543 13 HOH HOH . BA 14 HOH M 44 544 116 HOH HOH . BA 14 HOH M 45 545 145 HOH HOH . BA 14 HOH M 46 546 163 HOH HOH . BA 14 HOH M 47 547 5 HOH HOH . BA 14 HOH M 48 548 84 HOH HOH . BA 14 HOH M 49 549 91 HOH HOH . BA 14 HOH M 50 550 122 HOH HOH . BA 14 HOH M 51 551 113 HOH HOH . BA 14 HOH M 52 552 41 HOH HOH . BA 14 HOH M 53 553 133 HOH HOH . BA 14 HOH M 54 554 164 HOH HOH . BA 14 HOH M 55 555 25 HOH HOH . BA 14 HOH M 56 556 99 HOH HOH . BA 14 HOH M 57 557 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . S 4 -25.449 -32.04 -6.951 1 88.75 ? N1 LDA 409 M 1 HETATM 2 O O1 LDA . . . S 4 -25.791 -31.084 -6.226 1 96.11 ? O1 LDA 409 M 1 HETATM 3 C CM1 LDA . . . S 4 -24.675 -32.969 -6.116 1 78.91 ? CM1 LDA 409 M 1 HETATM 4 C CM2 LDA . . . S 4 -26.655 -32.731 -7.435 1 95.36 ? CM2 LDA 409 M 1 HETATM 5 C C1 LDA . . . S 4 -24.696 -31.511 -8.086 1 86.65 ? C1 LDA 409 M 1 HETATM 6 C C2 LDA . . . S 4 -23.435 -32.34 -8.335 1 76.59 ? C2 LDA 409 M 1 HETATM 7 C C3 LDA . . . S 4 -22.772 -31.964 -9.658 1 72.98 ? C3 LDA 409 M 1 HETATM 8 C C4 LDA . . . S 4 -23.007 -33.039 -10.717 1 69.04 ? C4 LDA 409 M 1 HETATM 9 C C5 LDA . . . S 4 -21.7 -33.592 -11.277 1 60.27 ? C5 LDA 409 M 1 HETATM 10 C C6 LDA . . . S 4 -21.984 -34.616 -12.374 1 68.4 ? C6 LDA 409 M 1 HETATM 11 C C7 LDA . . . S 4 -21.006 -34.508 -13.539 1 58.56 ? C7 LDA 409 M 1 HETATM 12 C C8 LDA . . . S 4 -21.709 -34.767 -14.87 1 63.65 ? C8 LDA 409 M 1 HETATM 13 C C9 LDA . . . S 4 -22.847 -33.778 -15.099 1 61.05 ? C9 LDA 409 M 1 HETATM 14 C C10 LDA . . . S 4 -22.839 -33.174 -16.503 1 56.52 ? C10 LDA 409 M 1 HETATM 15 C C11 LDA . . . S 4 -23.942 -32.123 -16.62 1 60.49 ? C11 LDA 409 M 1 HETATM 16 C C12 LDA . . . S 4 -24.407 -31.932 -18.059 1 65.92 ? C12 LDA 409 M 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #