data_6Z1N
#
_model_server_result.job_id            ZvlsOUbEPsc6WHYNVKorkQ 
_model_server_result.datetime_utc      '2024-11-24 05:45:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z1n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6Z1N 
#
_exptl.entry_id    6Z1N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.326 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FARNESYL DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6Z1N 
_cell.length_a            184.074 
_cell.length_b            184.074 
_cell.length_c            112.593 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z1N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_566 x-y+2/3,-y+4/3,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 212.550347 150.124 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 41 A ASP 34 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc2 C O2A FPP . A FPP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc3 C O2B FPP . A FPP 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc4 E MG MG . A MG 403 1_555 F O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 E MG MG . A MG 403 1_555 F O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc6 E MG MG . A MG 403 1_555 F O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
#
_chem_comp.formula           'C15 H28 O7 P2' 
_chem_comp.formula_weight    382.326 
_chem_comp.id                FPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FARNESYL DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 FPP sing 83 n n 
C1 C2 FPP sing 84 n n 
C1 H11 FPP sing 85 n n 
C1 H12A FPP sing 86 n n 
O1 PA FPP sing 87 n n 
C2 C3 FPP doub 88 e n 
C2 H2 FPP sing 89 n n 
C3 C4 FPP sing 90 n n 
C3 C5 FPP sing 91 n n 
C4 H41 FPP sing 92 n n 
C4 H42 FPP sing 93 n n 
C4 H43 FPP sing 94 n n 
C5 C6 FPP sing 95 n n 
C5 H51 FPP sing 96 n n 
C5 H52 FPP sing 97 n n 
C6 C7 FPP sing 98 n n 
C6 H61 FPP sing 99 n n 
C6 H62 FPP sing 100 n n 
C7 C8 FPP doub 101 e n 
C7 H7 FPP sing 102 n n 
C8 C10 FPP sing 103 n n 
C8 C9 FPP sing 104 n n 
C10 H101 FPP sing 105 n n 
C10 H102 FPP sing 106 n n 
C10 H103 FPP sing 107 n n 
C9 C11 FPP sing 108 n n 
C9 H91 FPP sing 109 n n 
C9 H92 FPP sing 110 n n 
C11 C12 FPP sing 111 n n 
C11 H111 FPP sing 112 n n 
C11 H112 FPP sing 113 n n 
C12 C13 FPP doub 114 n n 
C12 H12 FPP sing 115 n n 
C13 C14 FPP sing 116 n n 
C13 C15 FPP sing 117 n n 
C14 H141 FPP sing 118 n n 
C14 H142 FPP sing 119 n n 
C14 H143 FPP sing 120 n n 
C15 H151 FPP sing 121 n n 
C15 H152 FPP sing 122 n n 
C15 H153 FPP sing 123 n n 
PA O1A FPP doub 124 n n 
PA O2A FPP sing 125 n n 
PA O3A FPP sing 126 n n 
O2A HOA2 FPP sing 127 n n 
O3A PB FPP sing 128 n n 
PB O1B FPP doub 129 n n 
PB O2B FPP sing 130 n n 
PB O3B FPP sing 131 n n 
O2B HOB2 FPP sing 132 n n 
O3B HOB3 FPP sing 133 n n 
#
_atom_sites.entry_id                     6Z1N 
_atom_sites.fract_transf_matrix[1][1]    0.005433 
_atom_sites.fract_transf_matrix[1][2]    0.003137 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FPP A 1 401 301 FPP FPP . 
D 4 PO4 A 1 402 1 PO4 PO4 . 
E 5 MG A 1 403 1 MG MG . 
F 6 HOH A 1 501 60 HOH HOH . 
F 6 HOH A 2 502 58 HOH HOH . 
F 6 HOH A 3 503 35 HOH HOH . 
F 6 HOH A 4 504 18 HOH HOH . 
F 6 HOH A 5 505 13 HOH HOH . 
F 6 HOH A 6 506 19 HOH HOH . 
F 6 HOH A 7 507 1 HOH HOH . 
F 6 HOH A 8 508 3 HOH HOH . 
F 6 HOH A 9 509 26 HOH HOH . 
F 6 HOH A 10 510 31 HOH HOH . 
F 6 HOH A 11 511 22 HOH HOH . 
F 6 HOH A 12 512 75 HOH HOH . 
F 6 HOH A 13 513 68 HOH HOH . 
F 6 HOH A 14 514 42 HOH HOH . 
F 6 HOH A 15 515 25 HOH HOH . 
F 6 HOH A 16 516 7 HOH HOH . 
F 6 HOH A 17 517 15 HOH HOH . 
F 6 HOH A 18 518 32 HOH HOH . 
F 6 HOH A 19 519 14 HOH HOH . 
F 6 HOH A 20 520 50 HOH HOH . 
F 6 HOH A 21 521 20 HOH HOH . 
F 6 HOH A 22 522 114 HOH HOH . 
F 6 HOH A 23 523 16 HOH HOH . 
F 6 HOH A 24 524 73 HOH HOH . 
F 6 HOH A 25 525 5 HOH HOH . 
F 6 HOH A 26 526 83 HOH HOH . 
F 6 HOH A 27 527 36 HOH HOH . 
F 6 HOH A 28 528 110 HOH HOH . 
F 6 HOH A 29 529 104 HOH HOH . 
F 6 HOH A 30 530 87 HOH HOH . 
F 6 HOH A 31 531 119 HOH HOH . 
F 6 HOH A 32 532 38 HOH HOH . 
F 6 HOH A 33 533 4 HOH HOH . 
F 6 HOH A 34 534 66 HOH HOH . 
F 6 HOH A 35 535 37 HOH HOH . 
F 6 HOH A 36 536 95 HOH HOH . 
F 6 HOH A 37 537 65 HOH HOH . 
F 6 HOH A 38 538 71 HOH HOH . 
F 6 HOH A 39 539 48 HOH HOH . 
F 6 HOH A 40 540 111 HOH HOH . 
F 6 HOH A 41 541 21 HOH HOH . 
F 6 HOH A 42 542 61 HOH HOH . 
F 6 HOH A 43 543 72 HOH HOH . 
F 6 HOH A 44 544 109 HOH HOH . 
F 6 HOH A 45 545 43 HOH HOH . 
F 6 HOH A 46 546 33 HOH HOH . 
F 6 HOH A 47 547 2 HOH HOH . 
F 6 HOH A 48 548 39 HOH HOH . 
F 6 HOH A 49 549 57 HOH HOH . 
F 6 HOH A 50 550 47 HOH HOH . 
F 6 HOH A 51 551 77 HOH HOH . 
F 6 HOH A 52 552 34 HOH HOH . 
F 6 HOH A 53 553 105 HOH HOH . 
F 6 HOH A 54 554 88 HOH HOH . 
F 6 HOH A 55 555 117 HOH HOH . 
F 6 HOH A 56 556 76 HOH HOH . 
F 6 HOH A 57 557 63 HOH HOH . 
F 6 HOH A 58 558 86 HOH HOH . 
F 6 HOH A 59 559 94 HOH HOH . 
F 6 HOH A 60 560 53 HOH HOH . 
F 6 HOH A 61 561 106 HOH HOH . 
F 6 HOH A 62 562 54 HOH HOH . 
F 6 HOH A 63 563 102 HOH HOH . 
F 6 HOH A 64 564 29 HOH HOH . 
F 6 HOH A 65 565 56 HOH HOH . 
F 6 HOH A 66 566 120 HOH HOH . 
F 6 HOH A 67 567 70 HOH HOH . 
F 6 HOH A 68 568 93 HOH HOH . 
F 6 HOH A 69 569 81 HOH HOH . 
F 6 HOH A 70 570 78 HOH HOH . 
F 6 HOH A 71 571 108 HOH HOH . 
F 6 HOH A 72 572 44 HOH HOH . 
F 6 HOH A 73 573 67 HOH HOH . 
F 6 HOH A 74 574 85 HOH HOH . 
F 6 HOH A 75 575 101 HOH HOH . 
F 6 HOH A 76 576 112 HOH HOH . 
F 6 HOH A 77 577 103 HOH HOH . 
F 6 HOH A 78 578 84 HOH HOH . 
F 6 HOH A 79 579 69 HOH HOH . 
F 6 HOH A 80 580 64 HOH HOH . 
F 6 HOH A 81 581 99 HOH HOH . 
F 6 HOH A 82 582 116 HOH HOH . 
F 6 HOH A 83 583 118 HOH HOH . 
G 6 HOH B 1 301 92 HOH HOH . 
G 6 HOH B 2 302 122 HOH HOH . 
G 6 HOH B 3 303 9 HOH HOH . 
G 6 HOH B 4 304 97 HOH HOH . 
G 6 HOH B 5 305 113 HOH HOH . 
G 6 HOH B 6 306 27 HOH HOH . 
G 6 HOH B 7 307 10 HOH HOH . 
G 6 HOH B 8 308 98 HOH HOH . 
G 6 HOH B 9 309 41 HOH HOH . 
G 6 HOH B 10 310 12 HOH HOH . 
G 6 HOH B 11 311 52 HOH HOH . 
G 6 HOH B 12 312 30 HOH HOH . 
G 6 HOH B 13 313 23 HOH HOH . 
G 6 HOH B 14 314 11 HOH HOH . 
G 6 HOH B 15 315 40 HOH HOH . 
G 6 HOH B 16 316 59 HOH HOH . 
G 6 HOH B 17 317 28 HOH HOH . 
G 6 HOH B 18 318 24 HOH HOH . 
G 6 HOH B 19 319 46 HOH HOH . 
G 6 HOH B 20 320 6 HOH HOH . 
G 6 HOH B 21 321 17 HOH HOH . 
G 6 HOH B 22 322 89 HOH HOH . 
G 6 HOH B 23 323 49 HOH HOH . 
G 6 HOH B 24 324 45 HOH HOH . 
G 6 HOH B 25 325 8 HOH HOH . 
G 6 HOH B 26 326 51 HOH HOH . 
G 6 HOH B 27 327 55 HOH HOH . 
G 6 HOH B 28 328 96 HOH HOH . 
G 6 HOH B 29 329 115 HOH HOH . 
G 6 HOH B 30 330 62 HOH HOH . 
G 6 HOH B 31 331 100 HOH HOH . 
G 6 HOH B 32 332 82 HOH HOH . 
G 6 HOH B 33 333 121 HOH HOH . 
G 6 HOH B 34 334 107 HOH HOH . 
G 6 HOH B 35 335 91 HOH HOH . 
G 6 HOH B 36 336 74 HOH HOH . 
G 6 HOH B 37 337 90 HOH HOH . 
G 6 HOH B 38 338 79 HOH HOH . 
G 6 HOH B 39 339 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FPP . . . C 3 29.142 116.699 26.587 1 48.4 ? C1 FPP 401 A 1 
HETATM 2 O O1 FPP . . . C 3 28.608 115.898 25.571 1 48.88 ? O1 FPP 401 A 1 
HETATM 3 C C2 FPP . . . C 3 28.607 118.13 26.495 1 39.65 ? C2 FPP 401 A 1 
HETATM 4 C C3 FPP . . . C 3 29.421 119.16 26.64 1 49.13 ? C3 FPP 401 A 1 
HETATM 5 C C4 FPP . . . C 3 30.912 118.923 26.872 1 47.58 ? C4 FPP 401 A 1 
HETATM 6 C C5 FPP . . . C 3 28.879 120.589 26.57 1 54.38 ? C5 FPP 401 A 1 
HETATM 7 C C6 FPP . . . C 3 27.917 120.85 27.74 1 55.26 ? C6 FPP 401 A 1 
HETATM 8 C C7 FPP . . . C 3 27.484 122.322 27.73 1 65.24 ? C7 FPP 401 A 1 
HETATM 9 C C8 FPP . . . C 3 26.213 122.681 27.73 1 71.11 ? C8 FPP 401 A 1 
HETATM 10 C C10 FPP . . . C 3 25.109 121.624 27.735 1 68.66 ? C10 FPP 401 A 1 
HETATM 11 C C9 FPP . . . C 3 25.814 124.159 27.712 1 74.7 ? C9 FPP 401 A 1 
HETATM 12 C C11 FPP . . . C 3 27.019 125.098 27.735 1 64.34 ? C11 FPP 401 A 1 
HETATM 13 C C12 FPP . . . C 3 27.141 125.622 29.163 1 72.67 ? C12 FPP 401 A 1 
HETATM 14 C C13 FPP . . . C 3 26.872 126.873 29.471 1 66.72 ? C13 FPP 401 A 1 
HETATM 15 C C14 FPP . . . C 3 27.007 127.332 30.915 1 64.8 ? C14 FPP 401 A 1 
HETATM 16 C C15 FPP . . . C 3 26.439 127.867 28.403 1 66.75 ? C15 FPP 401 A 1 
HETATM 17 P PA FPP . . . C 3 29.639 115.543 24.335 1 44.66 ? PA FPP 401 A 1 
HETATM 18 O O1A FPP . . . C 3 30.095 116.824 23.669 1 49.92 -1 O1A FPP 401 A 1 
HETATM 19 O O2A FPP . . . C 3 30.842 114.821 24.882 1 45.98 ? O2A FPP 401 A 1 
HETATM 20 O O3A FPP . . . C 3 28.852 114.607 23.246 1 52.2 ? O3A FPP 401 A 1 
HETATM 21 P PB FPP . . . C 3 29.329 113.088 22.857 1 49.11 ? PB FPP 401 A 1 
HETATM 22 O O1B FPP . . . C 3 30.566 113.158 21.99 1 48.38 ? O1B FPP 401 A 1 
HETATM 23 O O2B FPP . . . C 3 29.657 112.315 24.112 1 42.61 -1 O2B FPP 401 A 1 
HETATM 24 O O3B FPP . . . C 3 28.186 112.445 22.11 1 52.54 ? O3B FPP 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           528 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           24 
#