data_6Z1V # _model_server_result.job_id 26xzCgFX4-iOBiOLR8wY-g _model_server_result.datetime_utc '2024-11-22 00:21:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6Z1V # _exptl.entry_id 6Z1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z1V _cell.length_a 61.521 _cell.length_b 89.446 _cell.length_c 35.684 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 152 1_555 A SG CYS 70 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 42 A CYS 153 1_555 A SG CYS 56 A CYS 167 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 42 A CYS 153 1_555 A SG CYS 56 A CYS 167 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 6Z1V _atom_sites.fract_transf_matrix[1][1] 0.016255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGE A 1 301 2 PGE PGE . D 4 EDO B 1 201 1 EDO EDO . E 5 ACY B 1 202 1 ACY ACY . F 6 HOH A 1 401 102 HOH HOH . F 6 HOH A 2 402 145 HOH HOH . F 6 HOH A 3 403 57 HOH HOH . F 6 HOH A 4 404 76 HOH HOH . F 6 HOH A 5 405 139 HOH HOH . F 6 HOH A 6 406 77 HOH HOH . F 6 HOH A 7 407 104 HOH HOH . F 6 HOH A 8 408 152 HOH HOH . F 6 HOH A 9 409 131 HOH HOH . F 6 HOH A 10 410 16 HOH HOH . F 6 HOH A 11 411 34 HOH HOH . F 6 HOH A 12 412 20 HOH HOH . F 6 HOH A 13 413 24 HOH HOH . F 6 HOH A 14 414 10 HOH HOH . F 6 HOH A 15 415 40 HOH HOH . F 6 HOH A 16 416 155 HOH HOH . F 6 HOH A 17 417 126 HOH HOH . F 6 HOH A 18 418 67 HOH HOH . F 6 HOH A 19 419 156 HOH HOH . F 6 HOH A 20 420 52 HOH HOH . F 6 HOH A 21 421 112 HOH HOH . F 6 HOH A 22 422 46 HOH HOH . F 6 HOH A 23 423 79 HOH HOH . F 6 HOH A 24 424 89 HOH HOH . F 6 HOH A 25 425 135 HOH HOH . F 6 HOH A 26 426 63 HOH HOH . F 6 HOH A 27 427 17 HOH HOH . F 6 HOH A 28 428 23 HOH HOH . F 6 HOH A 29 429 27 HOH HOH . F 6 HOH A 30 430 92 HOH HOH . F 6 HOH A 31 431 50 HOH HOH . F 6 HOH A 32 432 75 HOH HOH . F 6 HOH A 33 433 15 HOH HOH . F 6 HOH A 34 434 151 HOH HOH . F 6 HOH A 35 435 120 HOH HOH . F 6 HOH A 36 436 42 HOH HOH . F 6 HOH A 37 437 124 HOH HOH . F 6 HOH A 38 438 123 HOH HOH . F 6 HOH A 39 439 153 HOH HOH . F 6 HOH A 40 440 146 HOH HOH . F 6 HOH A 41 441 148 HOH HOH . G 6 HOH B 1 301 28 HOH HOH . G 6 HOH B 2 302 130 HOH HOH . G 6 HOH B 3 303 51 HOH HOH . G 6 HOH B 4 304 81 HOH HOH . G 6 HOH B 5 305 66 HOH HOH . G 6 HOH B 6 306 83 HOH HOH . G 6 HOH B 7 307 56 HOH HOH . G 6 HOH B 8 308 161 HOH HOH . G 6 HOH B 9 309 29 HOH HOH . G 6 HOH B 10 310 12 HOH HOH . G 6 HOH B 11 311 78 HOH HOH . G 6 HOH B 12 312 48 HOH HOH . G 6 HOH B 13 313 61 HOH HOH . G 6 HOH B 14 314 22 HOH HOH . G 6 HOH B 15 315 55 HOH HOH . G 6 HOH B 16 316 41 HOH HOH . G 6 HOH B 17 317 35 HOH HOH . G 6 HOH B 18 318 30 HOH HOH . G 6 HOH B 19 319 86 HOH HOH . G 6 HOH B 20 320 8 HOH HOH . G 6 HOH B 21 321 45 HOH HOH . G 6 HOH B 22 322 118 HOH HOH . G 6 HOH B 23 323 59 HOH HOH . G 6 HOH B 24 324 1 HOH HOH . G 6 HOH B 25 325 11 HOH HOH . G 6 HOH B 26 326 62 HOH HOH . G 6 HOH B 27 327 4 HOH HOH . G 6 HOH B 28 328 36 HOH HOH . G 6 HOH B 29 329 88 HOH HOH . G 6 HOH B 30 330 149 HOH HOH . G 6 HOH B 31 331 33 HOH HOH . G 6 HOH B 32 332 26 HOH HOH . G 6 HOH B 33 333 21 HOH HOH . G 6 HOH B 34 334 70 HOH HOH . G 6 HOH B 35 335 7 HOH HOH . G 6 HOH B 36 336 128 HOH HOH . G 6 HOH B 37 337 107 HOH HOH . G 6 HOH B 38 338 3 HOH HOH . G 6 HOH B 39 339 47 HOH HOH . G 6 HOH B 40 340 43 HOH HOH . G 6 HOH B 41 341 13 HOH HOH . G 6 HOH B 42 342 138 HOH HOH . G 6 HOH B 43 343 54 HOH HOH . G 6 HOH B 44 344 39 HOH HOH . G 6 HOH B 45 345 99 HOH HOH . G 6 HOH B 46 346 37 HOH HOH . G 6 HOH B 47 347 101 HOH HOH . G 6 HOH B 48 348 9 HOH HOH . G 6 HOH B 49 349 53 HOH HOH . G 6 HOH B 50 350 115 HOH HOH . G 6 HOH B 51 351 6 HOH HOH . G 6 HOH B 52 352 64 HOH HOH . G 6 HOH B 53 353 18 HOH HOH . G 6 HOH B 54 354 72 HOH HOH . G 6 HOH B 55 355 65 HOH HOH . G 6 HOH B 56 356 87 HOH HOH . G 6 HOH B 57 357 129 HOH HOH . G 6 HOH B 58 358 49 HOH HOH . G 6 HOH B 59 359 32 HOH HOH . G 6 HOH B 60 360 25 HOH HOH . G 6 HOH B 61 361 98 HOH HOH . G 6 HOH B 62 362 127 HOH HOH . G 6 HOH B 63 363 19 HOH HOH . G 6 HOH B 64 364 97 HOH HOH . G 6 HOH B 65 365 91 HOH HOH . G 6 HOH B 66 366 14 HOH HOH . G 6 HOH B 67 367 5 HOH HOH . G 6 HOH B 68 368 93 HOH HOH . G 6 HOH B 69 369 157 HOH HOH . G 6 HOH B 70 370 162 HOH HOH . G 6 HOH B 71 371 109 HOH HOH . G 6 HOH B 72 372 85 HOH HOH . G 6 HOH B 73 373 44 HOH HOH . G 6 HOH B 74 374 60 HOH HOH . G 6 HOH B 75 375 31 HOH HOH . G 6 HOH B 76 376 136 HOH HOH . G 6 HOH B 77 377 150 HOH HOH . G 6 HOH B 78 378 140 HOH HOH . G 6 HOH B 79 379 160 HOH HOH . G 6 HOH B 80 380 2 HOH HOH . G 6 HOH B 81 381 90 HOH HOH . G 6 HOH B 82 382 84 HOH HOH . G 6 HOH B 83 383 154 HOH HOH . G 6 HOH B 84 384 95 HOH HOH . G 6 HOH B 85 385 73 HOH HOH . G 6 HOH B 86 386 94 HOH HOH . G 6 HOH B 87 387 58 HOH HOH . G 6 HOH B 88 388 38 HOH HOH . G 6 HOH B 89 389 164 HOH HOH . G 6 HOH B 90 390 163 HOH HOH . G 6 HOH B 91 391 147 HOH HOH . G 6 HOH B 92 392 143 HOH HOH . G 6 HOH B 93 393 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 13.546 16.465 2.601 1 46.01 ? C1 EDO 201 B 1 HETATM 2 O O1 EDO . . . D 4 13.818 17.129 1.368 1 48.18 ? O1 EDO 201 B 1 HETATM 3 C C2 EDO . . . D 4 13.92 14.991 2.464 1 46.75 ? C2 EDO 201 B 1 HETATM 4 O O2 EDO . . . D 4 14.837 14.836 1.371 1 62.9 ? O2 EDO 201 B 1 HETATM 5 H H11 EDO . . . D 4 12.487 16.56 2.851 1 55.25 ? H11 EDO 201 B 1 HETATM 6 H H12 EDO . . . D 4 14.123 16.923 3.407 1 55.25 ? H12 EDO 201 B 1 HETATM 7 H HO1 EDO . . . D 4 13.674 18.079 1.475 0 57.84 ? HO1 EDO 201 B 1 HETATM 8 H H21 EDO . . . D 4 13.023 14.394 2.285 1 56.13 ? H21 EDO 201 B 1 HETATM 9 H H22 EDO . . . D 4 14.38 14.636 3.389 1 56.13 ? H22 EDO 201 B 1 HETATM 10 H HO2 EDO . . . D 4 15.37 14.041 1.508 1 75.52 ? HO2 EDO 201 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #