data_6Z25 # _model_server_result.job_id xGBYtAssvFUcqma-n9yYjA _model_server_result.datetime_utc '2024-11-27 18:10:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6Z25 # _exptl.entry_id 6Z25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z25 _cell.length_a 60.23 _cell.length_b 77.265 _cell.length_c 55.741 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 69 1_555 A SG CYS 234 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? covale ? covale1 A OG SER 66 A SER 70 1_555 F C8 CAZ . A CAZ 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.248 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 6Z25 _atom_sites.fract_transf_matrix[1][1] 0.016603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 301 GOL GOL . C 2 GOL A 1 302 501 GOL GOL . D 2 GOL A 1 303 601 GOL GOL . E 2 GOL A 1 304 701 GOL GOL . F 3 CAZ A 1 305 801 CAZ TAZ . G 4 SO4 A 1 306 1 SO4 SO4 . H 4 SO4 A 1 307 2 SO4 SO4 . I 4 SO4 A 1 308 3 SO4 SO4 . J 4 SO4 A 1 309 4 SO4 SO4 . K 4 SO4 A 1 310 5 SO4 SO4 . L 5 HOH A 1 401 40 HOH HOH . L 5 HOH A 2 402 233 HOH HOH . L 5 HOH A 3 403 78 HOH HOH . L 5 HOH A 4 404 88 HOH HOH . L 5 HOH A 5 405 90 HOH HOH . L 5 HOH A 6 406 185 HOH HOH . L 5 HOH A 7 407 102 HOH HOH . L 5 HOH A 8 408 145 HOH HOH . L 5 HOH A 9 409 165 HOH HOH . L 5 HOH A 10 410 172 HOH HOH . L 5 HOH A 11 411 45 HOH HOH . L 5 HOH A 12 412 204 HOH HOH . L 5 HOH A 13 413 3 HOH HOH . L 5 HOH A 14 414 74 HOH HOH . L 5 HOH A 15 415 180 HOH HOH . L 5 HOH A 16 416 236 HOH HOH . L 5 HOH A 17 417 111 HOH HOH . L 5 HOH A 18 418 174 HOH HOH . L 5 HOH A 19 419 218 HOH HOH . L 5 HOH A 20 420 158 HOH HOH . L 5 HOH A 21 421 103 HOH HOH . L 5 HOH A 22 422 148 HOH HOH . L 5 HOH A 23 423 54 HOH HOH . L 5 HOH A 24 424 21 HOH HOH . L 5 HOH A 25 425 49 HOH HOH . L 5 HOH A 26 426 120 HOH HOH . L 5 HOH A 27 427 13 HOH HOH . L 5 HOH A 28 428 10 HOH HOH . L 5 HOH A 29 429 142 HOH HOH . L 5 HOH A 30 430 104 HOH HOH . L 5 HOH A 31 431 52 HOH HOH . L 5 HOH A 32 432 7 HOH HOH . L 5 HOH A 33 433 80 HOH HOH . L 5 HOH A 34 434 42 HOH HOH . L 5 HOH A 35 435 38 HOH HOH . L 5 HOH A 36 436 43 HOH HOH . L 5 HOH A 37 437 97 HOH HOH . L 5 HOH A 38 438 51 HOH HOH . L 5 HOH A 39 439 55 HOH HOH . L 5 HOH A 40 440 119 HOH HOH . L 5 HOH A 41 441 17 HOH HOH . L 5 HOH A 42 442 191 HOH HOH . L 5 HOH A 43 443 9 HOH HOH . L 5 HOH A 44 444 6 HOH HOH . L 5 HOH A 45 445 68 HOH HOH . L 5 HOH A 46 446 144 HOH HOH . L 5 HOH A 47 447 199 HOH HOH . L 5 HOH A 48 448 30 HOH HOH . L 5 HOH A 49 449 59 HOH HOH . L 5 HOH A 50 450 14 HOH HOH . L 5 HOH A 51 451 152 HOH HOH . L 5 HOH A 52 452 224 HOH HOH . L 5 HOH A 53 453 1 HOH HOH . L 5 HOH A 54 454 116 HOH HOH . L 5 HOH A 55 455 82 HOH HOH . L 5 HOH A 56 456 86 HOH HOH . L 5 HOH A 57 457 22 HOH HOH . L 5 HOH A 58 458 24 HOH HOH . L 5 HOH A 59 459 157 HOH HOH . L 5 HOH A 60 460 156 HOH HOH . L 5 HOH A 61 461 11 HOH HOH . L 5 HOH A 62 462 71 HOH HOH . L 5 HOH A 63 463 26 HOH HOH . L 5 HOH A 64 464 179 HOH HOH . L 5 HOH A 65 465 35 HOH HOH . L 5 HOH A 66 466 226 HOH HOH . L 5 HOH A 67 467 92 HOH HOH . L 5 HOH A 68 468 81 HOH HOH . L 5 HOH A 69 469 25 HOH HOH . L 5 HOH A 70 470 66 HOH HOH . L 5 HOH A 71 471 131 HOH HOH . L 5 HOH A 72 472 96 HOH HOH . L 5 HOH A 73 473 28 HOH HOH . L 5 HOH A 74 474 121 HOH HOH . L 5 HOH A 75 475 205 HOH HOH . L 5 HOH A 76 476 216 HOH HOH . L 5 HOH A 77 477 44 HOH HOH . L 5 HOH A 78 478 114 HOH HOH . L 5 HOH A 79 479 34 HOH HOH . L 5 HOH A 80 480 95 HOH HOH . L 5 HOH A 81 481 130 HOH HOH . L 5 HOH A 82 482 151 HOH HOH . L 5 HOH A 83 483 58 HOH HOH . L 5 HOH A 84 484 5 HOH HOH . L 5 HOH A 85 485 93 HOH HOH . L 5 HOH A 86 486 230 HOH HOH . L 5 HOH A 87 487 223 HOH HOH . L 5 HOH A 88 488 41 HOH HOH . L 5 HOH A 89 489 115 HOH HOH . L 5 HOH A 90 490 61 HOH HOH . L 5 HOH A 91 491 70 HOH HOH . L 5 HOH A 92 492 19 HOH HOH . L 5 HOH A 93 493 29 HOH HOH . L 5 HOH A 94 494 2 HOH HOH . L 5 HOH A 95 495 15 HOH HOH . L 5 HOH A 96 496 63 HOH HOH . L 5 HOH A 97 497 139 HOH HOH . L 5 HOH A 98 498 76 HOH HOH . L 5 HOH A 99 499 126 HOH HOH . L 5 HOH A 100 500 203 HOH HOH . L 5 HOH A 101 501 178 HOH HOH . L 5 HOH A 102 502 16 HOH HOH . L 5 HOH A 103 503 150 HOH HOH . L 5 HOH A 104 504 143 HOH HOH . L 5 HOH A 105 505 37 HOH HOH . L 5 HOH A 106 506 225 HOH HOH . L 5 HOH A 107 507 138 HOH HOH . L 5 HOH A 108 508 187 HOH HOH . L 5 HOH A 109 509 12 HOH HOH . L 5 HOH A 110 510 107 HOH HOH . L 5 HOH A 111 511 117 HOH HOH . L 5 HOH A 112 512 173 HOH HOH . L 5 HOH A 113 513 163 HOH HOH . L 5 HOH A 114 514 85 HOH HOH . L 5 HOH A 115 515 77 HOH HOH . L 5 HOH A 116 516 192 HOH HOH . L 5 HOH A 117 517 60 HOH HOH . L 5 HOH A 118 518 84 HOH HOH . L 5 HOH A 119 519 213 HOH HOH . L 5 HOH A 120 520 27 HOH HOH . L 5 HOH A 121 521 87 HOH HOH . L 5 HOH A 122 522 18 HOH HOH . L 5 HOH A 123 523 20 HOH HOH . L 5 HOH A 124 524 79 HOH HOH . L 5 HOH A 125 525 23 HOH HOH . L 5 HOH A 126 526 32 HOH HOH . L 5 HOH A 127 527 65 HOH HOH . L 5 HOH A 128 528 110 HOH HOH . L 5 HOH A 129 529 106 HOH HOH . L 5 HOH A 130 530 47 HOH HOH . L 5 HOH A 131 531 98 HOH HOH . L 5 HOH A 132 532 184 HOH HOH . L 5 HOH A 133 533 171 HOH HOH . L 5 HOH A 134 534 105 HOH HOH . L 5 HOH A 135 535 135 HOH HOH . L 5 HOH A 136 536 146 HOH HOH . L 5 HOH A 137 537 219 HOH HOH . L 5 HOH A 138 538 31 HOH HOH . L 5 HOH A 139 539 57 HOH HOH . L 5 HOH A 140 540 161 HOH HOH . L 5 HOH A 141 541 112 HOH HOH . L 5 HOH A 142 542 91 HOH HOH . L 5 HOH A 143 543 162 HOH HOH . L 5 HOH A 144 544 8 HOH HOH . L 5 HOH A 145 545 133 HOH HOH . L 5 HOH A 146 546 140 HOH HOH . L 5 HOH A 147 547 222 HOH HOH . L 5 HOH A 148 548 137 HOH HOH . L 5 HOH A 149 549 67 HOH HOH . L 5 HOH A 150 550 132 HOH HOH . L 5 HOH A 151 551 147 HOH HOH . L 5 HOH A 152 552 33 HOH HOH . L 5 HOH A 153 553 69 HOH HOH . L 5 HOH A 154 554 202 HOH HOH . L 5 HOH A 155 555 99 HOH HOH . L 5 HOH A 156 556 208 HOH HOH . L 5 HOH A 157 557 183 HOH HOH . L 5 HOH A 158 558 53 HOH HOH . L 5 HOH A 159 559 129 HOH HOH . L 5 HOH A 160 560 159 HOH HOH . L 5 HOH A 161 561 169 HOH HOH . L 5 HOH A 162 562 48 HOH HOH . L 5 HOH A 163 563 4 HOH HOH . L 5 HOH A 164 564 154 HOH HOH . L 5 HOH A 165 565 182 HOH HOH . L 5 HOH A 166 566 50 HOH HOH . L 5 HOH A 167 567 36 HOH HOH . L 5 HOH A 168 568 229 HOH HOH . L 5 HOH A 169 569 62 HOH HOH . L 5 HOH A 170 570 176 HOH HOH . L 5 HOH A 171 571 73 HOH HOH . L 5 HOH A 172 572 228 HOH HOH . L 5 HOH A 173 573 167 HOH HOH . L 5 HOH A 174 574 64 HOH HOH . L 5 HOH A 175 575 189 HOH HOH . L 5 HOH A 176 576 141 HOH HOH . L 5 HOH A 177 577 190 HOH HOH . L 5 HOH A 178 578 175 HOH HOH . L 5 HOH A 179 579 207 HOH HOH . L 5 HOH A 180 580 118 HOH HOH . L 5 HOH A 181 581 215 HOH HOH . L 5 HOH A 182 582 237 HOH HOH . L 5 HOH A 183 583 194 HOH HOH . L 5 HOH A 184 584 136 HOH HOH . L 5 HOH A 185 585 109 HOH HOH . L 5 HOH A 186 586 188 HOH HOH . L 5 HOH A 187 587 206 HOH HOH . L 5 HOH A 188 588 232 HOH HOH . L 5 HOH A 189 589 193 HOH HOH . L 5 HOH A 190 590 94 HOH HOH . L 5 HOH A 191 591 212 HOH HOH . L 5 HOH A 192 592 75 HOH HOH . L 5 HOH A 193 593 123 HOH HOH . L 5 HOH A 194 594 134 HOH HOH . L 5 HOH A 195 595 181 HOH HOH . L 5 HOH A 196 596 56 HOH HOH . L 5 HOH A 197 597 227 HOH HOH . L 5 HOH A 198 598 83 HOH HOH . L 5 HOH A 199 599 168 HOH HOH . L 5 HOH A 200 600 177 HOH HOH . L 5 HOH A 201 601 160 HOH HOH . L 5 HOH A 202 602 234 HOH HOH . L 5 HOH A 203 603 195 HOH HOH . L 5 HOH A 204 604 197 HOH HOH . L 5 HOH A 205 605 211 HOH HOH . L 5 HOH A 206 606 39 HOH HOH . L 5 HOH A 207 607 198 HOH HOH . L 5 HOH A 208 608 149 HOH HOH . L 5 HOH A 209 609 200 HOH HOH . L 5 HOH A 210 610 153 HOH HOH . L 5 HOH A 211 611 72 HOH HOH . L 5 HOH A 212 612 209 HOH HOH . L 5 HOH A 213 613 238 HOH HOH . L 5 HOH A 214 614 46 HOH HOH . L 5 HOH A 215 615 210 HOH HOH . L 5 HOH A 216 616 166 HOH HOH . L 5 HOH A 217 617 89 HOH HOH . L 5 HOH A 218 618 217 HOH HOH . L 5 HOH A 219 619 155 HOH HOH . L 5 HOH A 220 620 108 HOH HOH . L 5 HOH A 221 621 127 HOH HOH . L 5 HOH A 222 622 214 HOH HOH . L 5 HOH A 223 623 196 HOH HOH . L 5 HOH A 224 624 125 HOH HOH . L 5 HOH A 225 625 239 HOH HOH . L 5 HOH A 226 626 235 HOH HOH . L 5 HOH A 227 627 100 HOH HOH . L 5 HOH A 228 628 170 HOH HOH . L 5 HOH A 229 629 221 HOH HOH . L 5 HOH A 230 630 186 HOH HOH . L 5 HOH A 231 631 220 HOH HOH . L 5 HOH A 232 632 122 HOH HOH . L 5 HOH A 233 633 201 HOH HOH . L 5 HOH A 234 634 128 HOH HOH . L 5 HOH A 235 635 113 HOH HOH . L 5 HOH A 236 636 231 HOH HOH . L 5 HOH A 237 637 124 HOH HOH . L 5 HOH A 238 638 101 HOH HOH . L 5 HOH A 239 639 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 27.949 25.296 -3.408 1 39.14 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 2 28.777 24.721 -2.399 1 36.74 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 2 27.159 24.169 -4.107 1 41.49 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 2 27.93 23.042 -4.317 1 42.93 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 2 26.706 24.769 -5.453 1 41.89 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 2 25.654 23.959 -5.917 1 40.99 ? O3 GOL 304 A 1 HETATM 7 H H11 GOL . . . E 2 28.464 25.777 -4.075 1 46.99 ? H11 GOL 304 A 1 HETATM 8 H H12 GOL . . . E 2 27.32 25.939 -3.044 1 46.99 ? H12 GOL 304 A 1 HETATM 9 H HO1 GOL . . . E 2 29.314 25.327 -2.155 1 44.1 ? HO1 GOL 304 A 1 HETATM 10 H H2 GOL . . . E 2 26.409 23.904 -3.552 1 49.8 ? H2 GOL 304 A 1 HETATM 11 H HO2 GOL . . . E 2 28.691 23.297 -4.61 1 51.53 ? HO2 GOL 304 A 1 HETATM 12 H H31 GOL . . . E 2 27.464 24.801 -6.057 1 50.28 ? H31 GOL 304 A 1 HETATM 13 H H32 GOL . . . E 2 26.449 25.695 -5.316 1 50.28 ? H32 GOL 304 A 1 HETATM 14 H HO3 GOL . . . E 2 25.678 23.981 -6.769 1 49.2 ? HO3 GOL 304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #