data_6Z2N # _model_server_result.job_id Lt7nRwbcMAjvmwXes3n8iw _model_server_result.datetime_utc '2024-11-25 19:58:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z2n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6Z2N # _exptl.entry_id 6Z2N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 890.87 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BCV-L6 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z2N _cell.length_a 86.24 _cell.length_b 156.625 _cell.length_c 77.492 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 487 AAA CYS 484 1_555 A SG CYS 494 AAA CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 B O1 EDO . AAA EDO 801 1_555 D FE FE . AAA FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 B O2 EDO . AAA EDO 801 1_555 D FE FE . AAA FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 C O6 Q5N . AAA Q5N 802 1_555 D FE FE . AAA FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 C O7 Q5N . AAA Q5N 802 1_555 D FE FE . AAA FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 C O9 Q5N . AAA Q5N 802 1_555 D FE FE . AAA FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 C O10 Q5N . AAA Q5N 802 1_555 D FE FE . AAA FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'C41 H47 F N10 O12' _chem_comp.formula_weight 890.87 _chem_comp.id Q5N _chem_comp.mon_nstd_flag . _chem_comp.name BCV-L6 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[4-[[[(2~{S})-2,6-bis[[2,3-bis(oxidanyl)phenyl]carbonylamino]hexanoyl]amino]methyl]-1,2,3-triazol-1-yl]methyl 4-[4-[(5~{R})-5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazine-1-carboxylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 Q5N doub 284 n y C26 C27 Q5N sing 285 n y C25 C24 Q5N sing 286 n y O5 C23 Q5N doub 287 n n C23 C24 Q5N sing 288 n n C23 N7 Q5N sing 289 n n C24 C29 Q5N doub 290 n y C27 C28 Q5N doub 291 n y C22 N7 Q5N sing 292 n n C22 C21 Q5N sing 293 n n C21 C20 Q5N sing 294 n n C29 C28 Q5N sing 295 n y C29 O7 Q5N sing 296 n n C28 O6 Q5N sing 297 n n C20 C19 Q5N sing 298 n n C19 C18 Q5N sing 299 n n N8 C18 Q5N sing 300 n n N8 C30 Q5N sing 301 n n C18 C17 Q5N sing 302 n n O10 C36 Q5N sing 303 n n O9 C35 Q5N sing 304 n n C36 C35 Q5N doub 305 n y C36 C31 Q5N sing 306 n y C30 C31 Q5N sing 307 n n C30 O8 Q5N doub 308 n n C35 C34 Q5N sing 309 n y C34 C33 Q5N doub 310 n y C31 C32 Q5N doub 311 n y C32 C33 Q5N sing 312 n y C17 N6 Q5N sing 313 n n C17 O4 Q5N doub 314 n n N6 H1 Q5N sing 315 n n C18 H3 Q5N sing 316 n n C19 H4 Q5N sing 317 n n C19 H5 Q5N sing 318 n n C20 H6 Q5N sing 319 n n C20 H7 Q5N sing 320 n n C21 H8 Q5N sing 321 n n C21 H9 Q5N sing 322 n n C22 H10 Q5N sing 323 n n C22 H11 Q5N sing 324 n n N7 H12 Q5N sing 325 n n C25 H13 Q5N sing 326 n n C26 H14 Q5N sing 327 n n C27 H15 Q5N sing 328 n n O6 H16 Q5N sing 329 n n O7 H17 Q5N sing 330 n n N8 H18 Q5N sing 331 n n C32 H19 Q5N sing 332 n n C33 H20 Q5N sing 333 n n C34 H21 Q5N sing 334 n n O9 H22 Q5N sing 335 n n O10 H23 Q5N sing 336 n n C1 N6 Q5N sing 337 n n N1 C2 Q5N sing 338 n y C2 C3 Q5N doub 339 n y C3 N3 Q5N sing 340 n y N3 N2 Q5N sing 341 n y N2 N1 Q5N doub 342 n y C1 C2 Q5N sing 343 n n C4 N3 Q5N sing 344 n n O1 C4 Q5N sing 345 n n C5 O1 Q5N sing 346 n n O2 C5 Q5N doub 347 n n N4 C7 Q5N sing 348 n n C7 C8 Q5N sing 349 n n C8 N5 Q5N sing 350 n n N5 C10 Q5N sing 351 n n C10 C11 Q5N sing 352 n n N4 C5 Q5N sing 353 n n N4 C11 Q5N sing 354 n n C6 C9 Q5N sing 355 n y C9 C12 Q5N doub 356 n y C12 C13 Q5N sing 357 n y C13 C14 Q5N doub 358 n y C14 C15 Q5N sing 359 n y C15 C6 Q5N doub 360 n y F1 C9 Q5N sing 361 n n H2 C1 Q5N sing 362 n n H24 C1 Q5N sing 363 n n H25 C3 Q5N sing 364 n n H26 C4 Q5N sing 365 n n H27 C4 Q5N sing 366 n n H28 C7 Q5N sing 367 n n H29 C7 Q5N sing 368 n n H30 C11 Q5N sing 369 n n H31 C11 Q5N sing 370 n n H32 C10 Q5N sing 371 n n H33 C10 Q5N sing 372 n n H34 C8 Q5N sing 373 n n H35 C8 Q5N sing 374 n n C6 N5 Q5N sing 375 n n H37 C12 Q5N sing 376 n n H38 C15 Q5N sing 377 n n H39 C14 Q5N sing 378 n n N9 C16 Q5N sing 379 n n C16 C37 Q5N sing 380 n n C37 O3 Q5N sing 381 n n O3 C39 Q5N sing 382 n n C39 N9 Q5N sing 383 n n N9 C13 Q5N sing 384 n n O11 C39 Q5N doub 385 n n H36 C16 Q5N sing 386 n n H40 C16 Q5N sing 387 n n C38 C37 Q5N sing 388 n n H41 C37 Q5N sing 389 n n N10 C38 Q5N sing 390 n n H42 N10 Q5N sing 391 n n C40 N10 Q5N sing 392 n n C41 C40 Q5N sing 393 n n O12 C40 Q5N doub 394 n n H43 C41 Q5N sing 395 n n H44 C41 Q5N sing 396 n n H45 C41 Q5N sing 397 n n H46 C38 Q5N sing 398 n n H47 C38 Q5N sing 399 n n # _atom_sites.entry_id 6Z2N _atom_sites.fract_transf_matrix[1][1] 0.011596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO AAA 1 801 801 EDO EDO . C 3 Q5N AAA 1 802 901 Q5N DRG . D 4 FE AAA 1 803 1 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N6 Q5N . . . C 3 -92.162 32.51 126.265 1 161.01 ? N6 Q5N 802 AAA 1 HETATM 2 C C17 Q5N . . . C 3 -91.112 33.29 125.969 1 153.35 ? C17 Q5N 802 AAA 1 HETATM 3 O O4 Q5N . . . C 3 -90.304 33.683 126.812 1 159.37 ? O4 Q5N 802 AAA 1 HETATM 4 C C18 Q5N . . . C 3 -90.923 33.671 124.504 1 147.72 ? C18 Q5N 802 AAA 1 HETATM 5 C C19 Q5N . . . C 3 -91.589 32.681 123.533 1 149.49 ? C19 Q5N 802 AAA 1 HETATM 6 C C20 Q5N . . . C 3 -90.863 31.358 123.319 1 148.87 ? C20 Q5N 802 AAA 1 HETATM 7 C C21 Q5N . . . C 3 -91.542 30.459 122.294 1 145.54 ? C21 Q5N 802 AAA 1 HETATM 8 C C22 Q5N . . . C 3 -90.964 29.056 122.253 1 144.59 ? C22 Q5N 802 AAA 1 HETATM 9 N N7 Q5N . . . C 3 -89.509 29.063 122.26 1 142.71 ? N7 Q5N 802 AAA 1 HETATM 10 C C23 Q5N . . . C 3 -88.802 28.6 121.23 1 135.14 ? C23 Q5N 802 AAA 1 HETATM 11 O O5 Q5N . . . C 3 -89.351 28.082 120.259 1 121.65 ? O5 Q5N 802 AAA 1 HETATM 12 C C24 Q5N . . . C 3 -87.317 28.705 121.274 1 138.68 ? C24 Q5N 802 AAA 1 HETATM 13 C C25 Q5N . . . C 3 -86.555 28.277 120.183 1 135.17 ? C25 Q5N 802 AAA 1 HETATM 14 C C26 Q5N . . . C 3 -85.194 28.37 120.181 1 139.08 ? C26 Q5N 802 AAA 1 HETATM 15 C C27 Q5N . . . C 3 -84.528 28.878 121.293 1 152.54 ? C27 Q5N 802 AAA 1 HETATM 16 C C28 Q5N . . . C 3 -85.249 29.312 122.389 1 159.59 ? C28 Q5N 802 AAA 1 HETATM 17 O O6 Q5N . . . C 3 -84.63 29.828 123.497 1 167.93 ? O6 Q5N 802 AAA 1 HETATM 18 C C29 Q5N . . . C 3 -86.642 29.223 122.388 1 156.32 ? C29 Q5N 802 AAA 1 HETATM 19 O O7 Q5N . . . C 3 -87.278 29.675 123.495 1 178.21 ? O7 Q5N 802 AAA 1 HETATM 20 N N8 Q5N . . . C 3 -89.466 33.846 124.364 1 147.55 ? N8 Q5N 802 AAA 1 HETATM 21 C C30 Q5N . . . C 3 -88.77 34.872 124.785 1 138.85 ? C30 Q5N 802 AAA 1 HETATM 22 O O8 Q5N . . . C 3 -89.321 35.92 124.971 1 127.54 ? O8 Q5N 802 AAA 1 HETATM 23 C C31 Q5N . . . C 3 -87.3 34.719 124.969 1 137.22 ? C31 Q5N 802 AAA 1 HETATM 24 C C32 Q5N . . . C 3 -86.524 35.872 125.128 1 136.78 ? C32 Q5N 802 AAA 1 HETATM 25 C C33 Q5N . . . C 3 -85.164 35.814 125.161 1 142.32 ? C33 Q5N 802 AAA 1 HETATM 26 C C34 Q5N . . . C 3 -84.501 34.577 124.91 1 145.6 ? C34 Q5N 802 AAA 1 HETATM 27 C C35 Q5N . . . C 3 -85.237 33.418 124.795 1 147.12 ? C35 Q5N 802 AAA 1 HETATM 28 O O9 Q5N . . . C 3 -84.584 32.215 124.603 1 164.06 ? O9 Q5N 802 AAA 1 HETATM 29 C C36 Q5N . . . C 3 -86.633 33.478 124.774 1 146.06 ? C36 Q5N 802 AAA 1 HETATM 30 O O10 Q5N . . . C 3 -87.288 32.313 124.591 1 162.54 ? O10 Q5N 802 AAA 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #