data_6Z2V # _model_server_result.job_id Eq6ns4oMp6bgLAioMyVsMg _model_server_result.datetime_utc '2024-10-17 01:47:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6Z2V # _exptl.entry_id 6Z2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4~{S})-7,8-bis(chloranyl)-9-methyl-1-oxidanylidene-spiro[2,4-dihydropyrido[3,4-b]indole-3,4'-piperidine]-4-carbonitrile" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.16 _cell.angle_gamma 90 _cell.entry_id 6Z2V _cell.length_a 84.376 _cell.length_b 45.393 _cell.length_c 106.334 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 Cl2 N4 O' _chem_comp.formula_weight 363.241 _chem_comp.id KHC _chem_comp.mon_nstd_flag . _chem_comp.name "(4~{S})-7,8-bis(chloranyl)-9-methyl-1-oxidanylidene-spiro[2,4-dihydropyrido[3,4-b]indole-3,4'-piperidine]-4-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C6 KHC sing 182 n n N2 C5 KHC sing 183 n n C6 C7 KHC sing 184 n n C5 C4 KHC sing 185 n n C7 C3 KHC sing 186 n n C4 C3 KHC sing 187 n n C3 N1 KHC sing 188 n n C3 C8 KHC sing 189 n n N1 C2 KHC sing 190 n n N3 C9 KHC trip 191 n n C9 C8 KHC sing 192 n n C8 C10 KHC sing 193 n n C2 O KHC doub 194 n n C2 C1 KHC sing 195 n n C10 C1 KHC doub 196 n y C10 C11 KHC sing 197 n y C1 N KHC sing 198 n y C11 C12 KHC doub 199 n y C11 C16 KHC sing 200 n y N C KHC sing 201 n n N C16 KHC sing 202 n y C12 C13 KHC sing 203 n y C16 C15 KHC doub 204 n y C13 C14 KHC doub 205 n y C15 C14 KHC sing 206 n y C15 CL1 KHC sing 207 n n C14 CL KHC sing 208 n n C13 H1 KHC sing 209 n n C12 H2 KHC sing 210 n n C H3 KHC sing 211 n n C H4 KHC sing 212 n n C H5 KHC sing 213 n n C8 H6 KHC sing 214 n n N1 H7 KHC sing 215 n n C7 H8 KHC sing 216 n n C7 H9 KHC sing 217 n n C6 H10 KHC sing 218 n n C6 H11 KHC sing 219 n n N2 H12 KHC sing 220 n n C5 H14 KHC sing 221 n n C5 H15 KHC sing 222 n n C4 H16 KHC sing 223 n n C4 H17 KHC sing 224 n n # _atom_sites.entry_id 6Z2V _atom_sites.fract_transf_matrix[1][1] 0.011852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KHC A 1 501 501 KHC KHC . C 3 K A 1 502 101 K K . D 4 EDO A 1 503 501 EDO EDO . E 5 HOH A 1 601 58 HOH HOH . E 5 HOH A 2 602 47 HOH HOH . E 5 HOH A 3 603 52 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 38 HOH HOH . E 5 HOH A 6 606 11 HOH HOH . E 5 HOH A 7 607 18 HOH HOH . E 5 HOH A 8 608 53 HOH HOH . E 5 HOH A 9 609 62 HOH HOH . E 5 HOH A 10 610 54 HOH HOH . E 5 HOH A 11 611 48 HOH HOH . E 5 HOH A 12 612 1 HOH HOH . E 5 HOH A 13 613 55 HOH HOH . E 5 HOH A 14 614 36 HOH HOH . E 5 HOH A 15 615 42 HOH HOH . E 5 HOH A 16 616 14 HOH HOH . E 5 HOH A 17 617 5 HOH HOH . E 5 HOH A 18 618 3 HOH HOH . E 5 HOH A 19 619 33 HOH HOH . E 5 HOH A 20 620 56 HOH HOH . E 5 HOH A 21 621 57 HOH HOH . E 5 HOH A 22 622 63 HOH HOH . E 5 HOH A 23 623 41 HOH HOH . E 5 HOH A 24 624 12 HOH HOH . E 5 HOH A 25 625 17 HOH HOH . E 5 HOH A 26 626 29 HOH HOH . E 5 HOH A 27 627 20 HOH HOH . E 5 HOH A 28 628 19 HOH HOH . E 5 HOH A 29 629 23 HOH HOH . E 5 HOH A 30 630 49 HOH HOH . E 5 HOH A 31 631 35 HOH HOH . E 5 HOH A 32 632 7 HOH HOH . E 5 HOH A 33 633 10 HOH HOH . E 5 HOH A 34 634 31 HOH HOH . E 5 HOH A 35 635 13 HOH HOH . E 5 HOH A 36 636 2 HOH HOH . E 5 HOH A 37 637 50 HOH HOH . E 5 HOH A 38 638 21 HOH HOH . E 5 HOH A 39 639 6 HOH HOH . E 5 HOH A 40 640 34 HOH HOH . E 5 HOH A 41 641 39 HOH HOH . E 5 HOH A 42 642 59 HOH HOH . E 5 HOH A 43 643 8 HOH HOH . E 5 HOH A 44 644 43 HOH HOH . E 5 HOH A 45 645 25 HOH HOH . E 5 HOH A 46 646 45 HOH HOH . E 5 HOH A 47 647 22 HOH HOH . E 5 HOH A 48 648 32 HOH HOH . E 5 HOH A 49 649 30 HOH HOH . E 5 HOH A 50 650 37 HOH HOH . E 5 HOH A 51 651 46 HOH HOH . E 5 HOH A 52 652 24 HOH HOH . E 5 HOH A 53 653 15 HOH HOH . E 5 HOH A 54 654 9 HOH HOH . E 5 HOH A 55 655 16 HOH HOH . E 5 HOH A 56 656 27 HOH HOH . E 5 HOH A 57 657 44 HOH HOH . E 5 HOH A 58 658 26 HOH HOH . E 5 HOH A 59 659 61 HOH HOH . E 5 HOH A 60 660 60 HOH HOH . E 5 HOH A 61 661 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 KHC . . . B 2 81.89 18.667 89.363 1 52.21 ? CL1 KHC 501 A 1 HETATM 2 C C15 KHC . . . B 2 81.325 17.062 89.077 1 55.46 ? C15 KHC 501 A 1 HETATM 3 C C14 KHC . . . B 2 80.822 16.718 87.83 1 52.29 ? C14 KHC 501 A 1 HETATM 4 CL CL KHC . . . B 2 80.802 17.878 86.553 1 45.41 ? CL KHC 501 A 1 HETATM 5 C C13 KHC . . . B 2 80.41 15.416 87.565 1 52.57 ? C13 KHC 501 A 1 HETATM 6 C C12 KHC . . . B 2 80.519 14.44 88.536 1 53.76 ? C12 KHC 501 A 1 HETATM 7 C C16 KHC . . . B 2 81.438 16.083 90.06 1 57.64 ? C16 KHC 501 A 1 HETATM 8 N N KHC . . . B 2 82.007 16.124 91.328 1 54.4 ? N KHC 501 A 1 HETATM 9 C C KHC . . . B 2 82.579 17.317 91.951 1 50.44 ? C KHC 501 A 1 HETATM 10 C C11 KHC . . . B 2 81.04 14.752 89.791 1 57.96 ? C11 KHC 501 A 1 HETATM 11 C C10 KHC . . . B 2 81.386 13.984 90.95 1 62.84 ? C10 KHC 501 A 1 HETATM 12 C C1 KHC . . . B 2 81.979 14.839 91.851 1 59.82 ? C1 KHC 501 A 1 HETATM 13 C C8 KHC . . . B 2 81.22 12.498 91.249 1 68.56 ? C8 KHC 501 A 1 HETATM 14 C C9 KHC . . . B 2 80.215 11.834 90.411 1 69.05 ? C9 KHC 501 A 1 HETATM 15 N N3 KHC . . . B 2 79.472 11.236 89.786 1 65.81 ? N3 KHC 501 A 1 HETATM 16 C C3 KHC . . . B 2 80.795 12.463 92.737 1 72.07 ? C3 KHC 501 A 1 HETATM 17 N N1 KHC . . . B 2 81.896 13.132 93.457 1 78.9 ? N1 KHC 501 A 1 HETATM 18 C C2 KHC . . . B 2 82.516 14.259 93.054 1 65.71 ? C2 KHC 501 A 1 HETATM 19 O O KHC . . . B 2 83.514 14.672 93.644 1 66.33 ? O KHC 501 A 1 HETATM 20 C C7 KHC . . . B 2 80.746 11.002 93.215 1 67.53 ? C7 KHC 501 A 1 HETATM 21 C C6 KHC . . . B 2 79.737 10.633 94.283 1 66.98 ? C6 KHC 501 A 1 HETATM 22 N N2 KHC . . . B 2 79.054 11.801 94.851 1 71.46 ? N2 KHC 501 A 1 HETATM 23 C C5 KHC . . . B 2 78.465 12.626 93.802 1 70.66 ? C5 KHC 501 A 1 HETATM 24 C C4 KHC . . . B 2 79.523 13.3 92.956 1 68 ? C4 KHC 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #