data_6Z31
#
_model_server_result.job_id            7OECoyAWYYiOqiYVtP1NyA 
_model_server_result.datetime_utc      '2024-11-22 00:14:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z31 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1302}' 
#
_entry.id    6Z31 
#
_exptl.entry_id    6Z31 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.36 
_cell.angle_gamma         90 
_cell.entry_id            6Z31 
_cell.length_a            65.555 
_cell.length_b            45.537 
_cell.length_c            70.275 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z31 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 1084 1_555 A SG CYS 45 A CYS 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 54 A CYS 1134 1_555 A SG CYS 62 A CYS 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 97 A CYS 1177 1_555 A SG CYS 125 A CYS 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 A SG CYS 110 A CYS 1190 1_555 A SG CYS 137 A CYS 1217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 4 B CYS 1084 1_555 B SG CYS 45 B CYS 1125 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 B SG CYS 54 B CYS 1134 1_555 B SG CYS 62 B CYS 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 B SG CYS 97 B CYS 1177 1_555 B SG CYS 125 B CYS 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 B SG CYS 110 B CYS 1190 1_555 B SG CYS 137 B CYS 1217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 D NA NA . A NA 1302 1_555 H O HOH . B HOH 1451 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? 
metalc ? metalc2 B OH TYR 50 B TYR 1130 1_555 F NA NA . B NA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc3 F NA NA . B NA 1302 1_555 H O HOH . B HOH 1416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6Z31 
_atom_sites.fract_transf_matrix[1][1]    0.015254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007558 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02196 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 1301 2 CL CL . 
D 3 NA A 1 1302 2 NA NA . 
E 2 CL B 1 1301 1 CL CL . 
F 3 NA B 1 1302 1 NA NA . 
G 4 HOH A 1 1401 53 HOH HOH . 
G 4 HOH A 2 1402 82 HOH HOH . 
G 4 HOH A 3 1403 14 HOH HOH . 
G 4 HOH A 4 1404 94 HOH HOH . 
G 4 HOH A 5 1405 16 HOH HOH . 
G 4 HOH A 6 1406 59 HOH HOH . 
G 4 HOH A 7 1407 96 HOH HOH . 
G 4 HOH A 8 1408 54 HOH HOH . 
G 4 HOH A 9 1409 89 HOH HOH . 
G 4 HOH A 10 1410 27 HOH HOH . 
G 4 HOH A 11 1411 2 HOH HOH . 
G 4 HOH A 12 1412 21 HOH HOH . 
G 4 HOH A 13 1413 17 HOH HOH . 
G 4 HOH A 14 1414 38 HOH HOH . 
G 4 HOH A 15 1415 41 HOH HOH . 
G 4 HOH A 16 1416 42 HOH HOH . 
G 4 HOH A 17 1417 9 HOH HOH . 
G 4 HOH A 18 1418 1 HOH HOH . 
G 4 HOH A 19 1419 68 HOH HOH . 
G 4 HOH A 20 1420 24 HOH HOH . 
G 4 HOH A 21 1421 45 HOH HOH . 
G 4 HOH A 22 1422 57 HOH HOH . 
G 4 HOH A 23 1423 47 HOH HOH . 
G 4 HOH A 24 1424 58 HOH HOH . 
G 4 HOH A 25 1425 91 HOH HOH . 
G 4 HOH A 26 1426 105 HOH HOH . 
G 4 HOH A 27 1427 111 HOH HOH . 
G 4 HOH A 28 1428 5 HOH HOH . 
G 4 HOH A 29 1429 40 HOH HOH . 
G 4 HOH A 30 1430 103 HOH HOH . 
G 4 HOH A 31 1431 101 HOH HOH . 
G 4 HOH A 32 1432 84 HOH HOH . 
G 4 HOH A 33 1433 73 HOH HOH . 
G 4 HOH A 34 1434 78 HOH HOH . 
G 4 HOH A 35 1435 51 HOH HOH . 
G 4 HOH A 36 1436 48 HOH HOH . 
G 4 HOH A 37 1437 86 HOH HOH . 
G 4 HOH A 38 1438 74 HOH HOH . 
G 4 HOH A 39 1439 52 HOH HOH . 
G 4 HOH A 40 1440 50 HOH HOH . 
G 4 HOH A 41 1441 49 HOH HOH . 
G 4 HOH A 42 1442 7 HOH HOH . 
G 4 HOH A 43 1443 32 HOH HOH . 
G 4 HOH A 44 1444 76 HOH HOH . 
G 4 HOH A 45 1445 26 HOH HOH . 
G 4 HOH A 46 1446 87 HOH HOH . 
G 4 HOH A 47 1447 66 HOH HOH . 
G 4 HOH A 48 1448 81 HOH HOH . 
H 4 HOH B 1 1401 63 HOH HOH . 
H 4 HOH B 2 1402 64 HOH HOH . 
H 4 HOH B 3 1403 15 HOH HOH . 
H 4 HOH B 4 1404 67 HOH HOH . 
H 4 HOH B 5 1405 90 HOH HOH . 
H 4 HOH B 6 1406 4 HOH HOH . 
H 4 HOH B 7 1407 28 HOH HOH . 
H 4 HOH B 8 1408 77 HOH HOH . 
H 4 HOH B 9 1409 88 HOH HOH . 
H 4 HOH B 10 1410 20 HOH HOH . 
H 4 HOH B 11 1411 69 HOH HOH . 
H 4 HOH B 12 1412 118 HOH HOH . 
H 4 HOH B 13 1413 12 HOH HOH . 
H 4 HOH B 14 1414 39 HOH HOH . 
H 4 HOH B 15 1415 10 HOH HOH . 
H 4 HOH B 16 1416 107 HOH HOH . 
H 4 HOH B 17 1417 34 HOH HOH . 
H 4 HOH B 18 1418 22 HOH HOH . 
H 4 HOH B 19 1419 35 HOH HOH . 
H 4 HOH B 20 1420 33 HOH HOH . 
H 4 HOH B 21 1421 3 HOH HOH . 
H 4 HOH B 22 1422 30 HOH HOH . 
H 4 HOH B 23 1423 72 HOH HOH . 
H 4 HOH B 24 1424 6 HOH HOH . 
H 4 HOH B 25 1425 62 HOH HOH . 
H 4 HOH B 26 1426 109 HOH HOH . 
H 4 HOH B 27 1427 108 HOH HOH . 
H 4 HOH B 28 1428 36 HOH HOH . 
H 4 HOH B 29 1429 18 HOH HOH . 
H 4 HOH B 30 1430 65 HOH HOH . 
H 4 HOH B 31 1431 23 HOH HOH . 
H 4 HOH B 32 1432 55 HOH HOH . 
H 4 HOH B 33 1433 71 HOH HOH . 
H 4 HOH B 34 1434 25 HOH HOH . 
H 4 HOH B 35 1435 79 HOH HOH . 
H 4 HOH B 36 1436 46 HOH HOH . 
H 4 HOH B 37 1437 112 HOH HOH . 
H 4 HOH B 38 1438 19 HOH HOH . 
H 4 HOH B 39 1439 60 HOH HOH . 
H 4 HOH B 40 1440 102 HOH HOH . 
H 4 HOH B 41 1441 43 HOH HOH . 
H 4 HOH B 42 1442 29 HOH HOH . 
H 4 HOH B 43 1443 61 HOH HOH . 
H 4 HOH B 44 1444 80 HOH HOH . 
H 4 HOH B 45 1445 83 HOH HOH . 
H 4 HOH B 46 1446 116 HOH HOH . 
H 4 HOH B 47 1447 97 HOH HOH . 
H 4 HOH B 48 1448 13 HOH HOH . 
H 4 HOH B 49 1449 44 HOH HOH . 
H 4 HOH B 50 1450 56 HOH HOH . 
H 4 HOH B 51 1451 8 HOH HOH . 
H 4 HOH B 52 1452 85 HOH HOH . 
H 4 HOH B 53 1453 75 HOH HOH . 
H 4 HOH B 54 1454 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               15.709 
_atom_site.Cartn_y               -32.4 
_atom_site.Cartn_z               -0.249 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#