data_6Z32 # _model_server_result.job_id v0Ns0jl0DGCpyRzB8Lzbyw _model_server_result.datetime_utc '2024-11-04 20:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1702}' # _entry.id 6Z32 # _exptl.entry_id 6Z32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z32 _cell.length_a 139.204 _cell.length_b 139.204 _cell.length_c 234.682 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG G 4 NAG 2 n C NAG 2 C 2 NAG G 5 NAG 2 n C BMA 3 C 3 BMA G 6 BMA 2 n C MAN 4 C 4 MAN G 7 MAN 2 n C MAN 5 C 5 MAN G 8 MAN 2 n C MAN 6 C 6 MAN G 9 MAN 2 n D NAG 1 D 1 NAG G 10 NAG 2 n D NAG 2 D 2 NAG G 11 NAG 2 n D BMA 3 D 3 BMA G 12 BMA 2 n D MAN 4 D 4 MAN G 13 MAN 2 n D MAN 5 D 5 MAN G 14 MAN 2 n D MAN 6 D 6 MAN G 15 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 934 1_555 A SG CYS 58 A CYS 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 64 A CYS 976 1_555 A SG CYS 75 A CYS 987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? disulf ? disulf3 A SG CYS 130 A CYS 1042 1_555 A SG CYS 165 A CYS 1077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 172 A CYS 1084 1_555 A SG CYS 213 A CYS 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 A SG CYS 222 A CYS 1134 1_555 A SG CYS 230 A CYS 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 265 A CYS 1177 1_555 A SG CYS 293 A CYS 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf7 A SG CYS 278 A CYS 1190 1_555 A SG CYS 305 A CYS 1217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 A SG CYS 315 A CYS 1227 1_555 A SG CYS 350 A CYS 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf9 A SG CYS 358 A CYS 1270 1_555 A SG CYS 370 A CYS 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf10 A SG CYS 407 A CYS 1319 1_555 A SG CYS 437 A CYS 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf11 A SG CYS 421 A CYS 1333 1_555 A SG CYS 449 A CYS 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf12 A SG CYS 457 A CYS 1369 1_555 A SG CYS 496 A CYS 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf13 A SG CYS 508 A CYS 1420 1_555 A SG CYS 515 A CYS 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 A SG CYS 549 A CYS 1461 1_555 A SG CYS 582 A CYS 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 A SG CYS 564 A CYS 1476 1_555 A SG CYS 594 A CYS 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf16 A SG CYS 604 A CYS 1516 1_555 A SG CYS 641 A CYS 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf17 A SG CYS 647 A CYS 1559 1_555 A SG CYS 654 A CYS 1566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf18 A SG CYS 686 A CYS 1598 1_555 A SG CYS 722 A CYS 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf19 A SG CYS 702 A CYS 1614 1_555 A SG CYS 734 A CYS 1646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf20 B SG CYS 22 B CYS 934 1_555 B SG CYS 58 B CYS 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf21 B SG CYS 64 B CYS 976 1_555 B SG CYS 75 B CYS 987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf22 B SG CYS 130 B CYS 1042 1_555 B SG CYS 165 B CYS 1077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf23 B SG CYS 172 B CYS 1084 1_555 B SG CYS 213 B CYS 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf24 B SG CYS 222 B CYS 1134 1_555 B SG CYS 230 B CYS 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf25 B SG CYS 265 B CYS 1177 1_555 B SG CYS 293 B CYS 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf26 B SG CYS 278 B CYS 1190 1_555 B SG CYS 305 B CYS 1217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf27 B SG CYS 315 B CYS 1227 1_555 B SG CYS 350 B CYS 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf28 B SG CYS 358 B CYS 1270 1_555 B SG CYS 370 B CYS 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? disulf ? disulf29 B SG CYS 407 B CYS 1319 1_555 B SG CYS 437 B CYS 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf30 B SG CYS 421 B CYS 1333 1_555 B SG CYS 449 B CYS 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf31 B SG CYS 457 B CYS 1369 1_555 B SG CYS 496 B CYS 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf32 B SG CYS 508 B CYS 1420 1_555 B SG CYS 515 B CYS 1427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf33 B SG CYS 549 B CYS 1461 1_555 B SG CYS 582 B CYS 1494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf34 B SG CYS 564 B CYS 1476 1_555 B SG CYS 594 B CYS 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf35 B SG CYS 604 B CYS 1516 1_555 B SG CYS 641 B CYS 1553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf36 B SG CYS 647 B CYS 1559 1_555 B SG CYS 654 B CYS 1566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf37 B SG CYS 686 B CYS 1598 1_555 B SG CYS 722 B CYS 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf38 B SG CYS 702 B CYS 1614 1_555 B SG CYS 734 B CYS 1646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 A ND2 ASN 39 A ASN 951 1_555 F C1 NAG . A NAG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale2 A ND2 ASN 400 A ASN 1312 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale3 B ND2 ASN 39 B ASN 951 1_555 G C1 NAG . B NAG 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale4 B ND2 ASN 334 B ASN 1246 1_555 H C1 NAG . B NAG 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B ND2 ASN 400 B ASN 1312 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale9 C O2 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale10 C O2 MAN . C MAN 5 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale13 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale14 D O2 MAN . D MAN 4 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale15 D O2 MAN . D MAN 5 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6Z32 _atom_sites.fract_transf_matrix[1][1] 0.007184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1701 1803 SO4 SO4 . F 4 NAG A 1 1702 1 NAG NAG . G 4 NAG B 1 1701 2 NAG NAG . H 4 NAG B 1 1702 3 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 201.977 63.754 258.027 1 158.15 ? C1 NAG 1702 A 1 HETATM 2 C C2 NAG . . . F 4 202.998 64.062 256.992 1 167.4 ? C2 NAG 1702 A 1 HETATM 3 C C3 NAG . . . F 4 204.204 64.657 257.679 1 182.14 ? C3 NAG 1702 A 1 HETATM 4 C C4 NAG . . . F 4 203.912 65.708 258.731 1 185.72 ? C4 NAG 1702 A 1 HETATM 5 C C5 NAG . . . F 4 202.782 65.214 259.609 1 179.97 ? C5 NAG 1702 A 1 HETATM 6 C C6 NAG . . . F 4 202.259 66.182 260.66 1 182.43 ? C6 NAG 1702 A 1 HETATM 7 C C7 NAG . . . F 4 202.972 62.228 255.338 1 185.24 ? C7 NAG 1702 A 1 HETATM 8 C C8 NAG . . . F 4 203.284 60.792 255.204 1 184.69 ? C8 NAG 1702 A 1 HETATM 9 N N2 NAG . . . F 4 203.421 62.814 256.43 1 172.32 ? N2 NAG 1702 A 1 HETATM 10 O O3 NAG . . . F 4 205.096 65.185 256.708 1 179.23 ? O3 NAG 1702 A 1 HETATM 11 O O4 NAG . . . F 4 205.121 65.953 259.473 1 164.29 ? O4 NAG 1702 A 1 HETATM 12 O O5 NAG . . . F 4 201.758 64.906 258.742 1 155.34 ? O5 NAG 1702 A 1 HETATM 13 O O6 NAG . . . F 4 200.953 66.723 260.45 1 166.14 ? O6 NAG 1702 A 1 HETATM 14 O O7 NAG . . . F 4 202.285 62.798 254.548 1 181.93 ? O7 NAG 1702 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #