data_6Z3R # _model_server_result.job_id Q_T35eWdPPunOpJZVJL0lg _model_server_result.datetime_utc '2025-07-07 13:51:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3701}' # _entry.id 6Z3R # _exptl.entry_id 6Z3R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z3R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG SER 218 C SER 218 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc2 C OG1 THR 253 C THR 253 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 G O1G ATP . C ATP 601 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 G O3B ATP . C ATP 601 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6Z3R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ANP A 1 3701 3701 ANP ANP . F 6 IHP A 1 3702 1 IHP IHP . G 7 ATP C 1 601 601 ATP ATP . H 8 MG C 1 602 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 5 193.803 159.195 142 1 67.57 ? PG ANP 3701 A 1 HETATM 2 O O1G ANP . . . E 5 192.813 158.115 142.361 1 67.57 ? O1G ANP 3701 A 1 HETATM 3 O O2G ANP . . . E 5 193.047 160.467 141.705 1 67.57 ? O2G ANP 3701 A 1 HETATM 4 O O3G ANP . . . E 5 194.534 158.777 140.749 1 67.57 ? O3G ANP 3701 A 1 HETATM 5 P PB ANP . . . E 5 194.601 159.129 144.802 1 67.57 ? PB ANP 3701 A 1 HETATM 6 O O1B ANP . . . E 5 195.817 158.53 145.452 1 67.57 ? O1B ANP 3701 A 1 HETATM 7 O O2B ANP . . . E 5 193.9 160.264 145.497 1 67.57 ? O2B ANP 3701 A 1 HETATM 8 N N3B ANP . . . E 5 194.86 159.433 143.22 1 67.57 ? N3B ANP 3701 A 1 HETATM 9 P PA ANP . . . E 5 192.734 157.267 146.018 1 67.57 ? PA ANP 3701 A 1 HETATM 10 O O1A ANP . . . E 5 191.599 156.47 145.467 1 67.57 ? O1A ANP 3701 A 1 HETATM 11 O O2A ANP . . . E 5 193.718 156.587 146.911 1 67.57 ? O2A ANP 3701 A 1 HETATM 12 O O3A ANP . . . E 5 193.533 157.938 144.803 1 67.57 ? O3A ANP 3701 A 1 HETATM 13 O O5' ANP . . . E 5 192.165 158.573 146.754 1 67.57 ? O5' ANP 3701 A 1 HETATM 14 C C5' ANP . . . E 5 192.324 158.688 148.19 1 67.57 ? C5' ANP 3701 A 1 HETATM 15 C C4' ANP . . . E 5 191.036 158.286 148.865 1 67.57 ? C4' ANP 3701 A 1 HETATM 16 O O4' ANP . . . E 5 190.997 158.862 150.197 1 67.57 ? O4' ANP 3701 A 1 HETATM 17 C C3' ANP . . . E 5 189.745 158.759 148.184 1 67.57 ? C3' ANP 3701 A 1 HETATM 18 O O3' ANP . . . E 5 189.262 157.795 147.259 1 67.57 ? O3' ANP 3701 A 1 HETATM 19 C C2' ANP . . . E 5 188.798 158.923 149.374 1 67.57 ? C2' ANP 3701 A 1 HETATM 20 O O2' ANP . . . E 5 188.232 157.699 149.79 1 67.57 ? O2' ANP 3701 A 1 HETATM 21 C C1' ANP . . . E 5 189.75 159.477 150.428 1 67.57 ? C1' ANP 3701 A 1 HETATM 22 N N9 ANP . . . E 5 189.938 160.922 150.371 1 67.57 ? N9 ANP 3701 A 1 HETATM 23 C C8 ANP . . . E 5 190.713 161.634 149.491 1 67.57 ? C8 ANP 3701 A 1 HETATM 24 N N7 ANP . . . E 5 190.671 162.927 149.716 1 67.57 ? N7 ANP 3701 A 1 HETATM 25 C C5 ANP . . . E 5 189.822 163.067 150.806 1 67.57 ? C5 ANP 3701 A 1 HETATM 26 C C6 ANP . . . E 5 189.373 164.19 151.525 1 67.57 ? C6 ANP 3701 A 1 HETATM 27 N N6 ANP . . . E 5 189.729 165.44 151.247 1 67.57 ? N6 ANP 3701 A 1 HETATM 28 N N1 ANP . . . E 5 188.53 163.967 152.561 1 67.57 ? N1 ANP 3701 A 1 HETATM 29 C C2 ANP . . . E 5 188.174 162.707 152.838 1 67.57 ? C2 ANP 3701 A 1 HETATM 30 N N3 ANP . . . E 5 188.532 161.579 152.234 1 67.57 ? N3 ANP 3701 A 1 HETATM 31 C C4 ANP . . . E 5 189.368 161.834 151.215 1 67.57 ? C4 ANP 3701 A 1 HETATM 32 H HNB1 ANP . . . E 5 195.509 159.932 143.047 1 67.57 ? HNB1 ANP 3701 A 1 HETATM 33 H "H5'1" ANP . . . E 5 192.549 159.62 148.43 1 67.57 ? "H5'1" ANP 3701 A 1 HETATM 34 H "H5'2" ANP . . . E 5 193.057 158.099 148.495 1 67.57 ? "H5'2" ANP 3701 A 1 HETATM 35 H H4' ANP . . . E 5 191.022 157.309 148.941 1 67.57 ? H4' ANP 3701 A 1 HETATM 36 H H3' ANP . . . E 5 189.89 159.63 147.732 1 67.57 ? H3' ANP 3701 A 1 HETATM 37 H HO3' ANP . . . E 5 188.681 158.162 146.76 1 67.57 ? HO3' ANP 3701 A 1 HETATM 38 H H2' ANP . . . E 5 188.085 159.583 149.166 1 67.57 ? H2' ANP 3701 A 1 HETATM 39 H HO2' ANP . . . E 5 187.539 157.857 150.255 1 67.57 ? HO2' ANP 3701 A 1 HETATM 40 H H1' ANP . . . E 5 189.418 159.229 151.321 1 67.57 ? H1' ANP 3701 A 1 HETATM 41 H H8 ANP . . . E 5 191.223 161.25 148.798 1 67.57 ? H8 ANP 3701 A 1 HETATM 42 H HN61 ANP . . . E 5 189.81 165.693 150.411 1 67.57 ? HN61 ANP 3701 A 1 HETATM 43 H HN62 ANP . . . E 5 189.882 166.004 151.901 1 67.57 ? HN62 ANP 3701 A 1 HETATM 44 H H2 ANP . . . E 5 187.584 162.605 153.569 1 67.57 ? H2 ANP 3701 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #