data_6Z3R
#
_model_server_result.job_id            4OBJO9HAx7tfjYj6GwCxvA 
_model_server_result.datetime_utc      '2025-07-05 14:08:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z3r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    6Z3R 
#
_exptl.entry_id    6Z3R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Z3R 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z3R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OG SER 218 C SER 218 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc2 C OG1 THR 253 C THR 253 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc3 G O1G ATP . C ATP 601 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc4 G O3B ATP . C ATP 601 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 120 n n 
PG O2G ATP sing 121 n n 
PG O3G ATP sing 122 n n 
PG O3B ATP sing 123 n n 
O2G HOG2 ATP sing 124 n n 
O3G HOG3 ATP sing 125 n n 
PB O1B ATP doub 126 n n 
PB O2B ATP sing 127 n n 
PB O3B ATP sing 128 n n 
PB O3A ATP sing 129 n n 
O2B HOB2 ATP sing 130 n n 
PA O1A ATP doub 131 n n 
PA O2A ATP sing 132 n n 
PA O3A ATP sing 133 n n 
PA O5' ATP sing 134 n n 
O2A HOA2 ATP sing 135 n n 
O5' C5' ATP sing 136 n n 
C5' C4' ATP sing 137 n n 
C5' "H5'1" ATP sing 138 n n 
C5' "H5'2" ATP sing 139 n n 
C4' O4' ATP sing 140 n n 
C4' C3' ATP sing 141 n n 
C4' H4' ATP sing 142 n n 
O4' C1' ATP sing 143 n n 
C3' O3' ATP sing 144 n n 
C3' C2' ATP sing 145 n n 
C3' H3' ATP sing 146 n n 
O3' HO3' ATP sing 147 n n 
C2' O2' ATP sing 148 n n 
C2' C1' ATP sing 149 n n 
C2' H2' ATP sing 150 n n 
O2' HO2' ATP sing 151 n n 
C1' N9 ATP sing 152 n n 
C1' H1' ATP sing 153 n n 
N9 C8 ATP sing 154 n y 
N9 C4 ATP sing 155 n y 
C8 N7 ATP doub 156 n y 
C8 H8 ATP sing 157 n n 
N7 C5 ATP sing 158 n y 
C5 C6 ATP sing 159 n y 
C5 C4 ATP doub 160 n y 
C6 N6 ATP sing 161 n n 
C6 N1 ATP doub 162 n y 
N6 HN61 ATP sing 163 n n 
N6 HN62 ATP sing 164 n n 
N1 C2 ATP sing 165 n y 
C2 N3 ATP doub 166 n y 
C2 H2 ATP sing 167 n n 
N3 C4 ATP sing 168 n y 
#
_atom_sites.entry_id                     6Z3R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 ANP A 1 3701 3701 ANP ANP . 
F 6 IHP A 1 3702 1 IHP IHP . 
G 7 ATP C 1 601 601 ATP ATP . 
H 8 MG C 1 602 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . G 7 166.096 154.546 213.874 1 45.97 ? PG ATP 601 C 1 
HETATM 2 O O1G ATP . . . G 7 164.748 153.894 213.849 1 45.97 ? O1G ATP 601 C 1 
HETATM 3 O O2G ATP . . . G 7 166.197 155.633 214.902 1 45.97 ? O2G ATP 601 C 1 
HETATM 4 O O3G ATP . . . G 7 167.215 153.551 213.974 1 45.97 ? O3G ATP 601 C 1 
HETATM 5 P PB ATP . . . G 7 167.08 156.577 212.066 1 45.97 ? PB ATP 601 C 1 
HETATM 6 O O1B ATP . . . G 7 167.298 157.315 213.328 1 45.97 ? O1B ATP 601 C 1 
HETATM 7 O O2B ATP . . . G 7 168.238 156.199 211.219 1 45.97 ? O2B ATP 601 C 1 
HETATM 8 O O3B ATP . . . G 7 166.25 155.269 212.446 1 45.97 ? O3B ATP 601 C 1 
HETATM 9 P PA ATP . . . G 7 165.519 158.92 211.324 1 45.97 ? PA ATP 601 C 1 
HETATM 10 O O1A ATP . . . G 7 164.18 158.896 211.978 1 45.97 ? O1A ATP 601 C 1 
HETATM 11 O O2A ATP . . . G 7 165.646 159.586 209.998 1 45.97 ? O2A ATP 601 C 1 
HETATM 12 O O3A ATP . . . G 7 166.042 157.416 211.193 1 45.97 ? O3A ATP 601 C 1 
HETATM 13 O O5' ATP . . . G 7 166.589 159.55 212.326 1 45.97 ? O5' ATP 601 C 1 
HETATM 14 C C5' ATP . . . G 7 167.332 160.704 211.874 1 45.97 ? C5' ATP 601 C 1 
HETATM 15 C C4' ATP . . . G 7 167.017 161.883 212.76 1 45.97 ? C4' ATP 601 C 1 
HETATM 16 O O4' ATP . . . G 7 168.019 162.907 212.556 1 45.97 ? O4' ATP 601 C 1 
HETATM 17 C C3' ATP . . . G 7 165.695 162.601 212.483 1 45.97 ? C3' ATP 601 C 1 
HETATM 18 O O3' ATP . . . G 7 165.249 163.318 213.626 1 45.97 ? O3' ATP 601 C 1 
HETATM 19 C C2' ATP . . . G 7 166.082 163.551 211.349 1 45.97 ? C2' ATP 601 C 1 
HETATM 20 O O2' ATP . . . G 7 165.288 164.715 211.352 1 45.97 ? O2' ATP 601 C 1 
HETATM 21 C C1' ATP . . . G 7 167.535 163.892 211.672 1 45.97 ? C1' ATP 601 C 1 
HETATM 22 N N9 ATP . . . G 7 168.402 163.907 210.5 1 45.97 ? N9 ATP 601 C 1 
HETATM 23 C C8 ATP . . . G 7 168.794 162.835 209.745 1 45.97 ? C8 ATP 601 C 1 
HETATM 24 N N7 ATP . . . G 7 169.58 163.179 208.752 1 45.97 ? N7 ATP 601 C 1 
HETATM 25 C C5 ATP . . . G 7 169.709 164.556 208.864 1 45.97 ? C5 ATP 601 C 1 
HETATM 26 C C6 ATP . . . G 7 170.412 165.512 208.108 1 45.97 ? C6 ATP 601 C 1 
HETATM 27 N N6 ATP . . . G 7 171.151 165.218 207.043 1 45.97 ? N6 ATP 601 C 1 
HETATM 28 N N1 ATP . . . G 7 170.32 166.804 208.501 1 45.97 ? N1 ATP 601 C 1 
HETATM 29 C C2 ATP . . . G 7 169.575 167.095 209.574 1 45.97 ? C2 ATP 601 C 1 
HETATM 30 N N3 ATP . . . G 7 168.872 166.282 210.357 1 45.97 ? N3 ATP 601 C 1 
HETATM 31 C C4 ATP . . . G 7 168.984 165.012 209.941 1 45.97 ? C4 ATP 601 C 1 
HETATM 32 H "H5'1" ATP . . . G 7 167.086 160.916 210.939 1 45.97 ? "H5'1" ATP 601 C 1 
HETATM 33 H "H5'2" ATP . . . G 7 168.302 160.513 211.907 1 45.97 ? "H5'2" ATP 601 C 1 
HETATM 34 H H4' ATP . . . G 7 167.045 161.586 213.695 1 45.97 ? H4' ATP 601 C 1 
HETATM 35 H H3' ATP . . . G 7 165.001 161.96 212.182 1 45.97 ? H3' ATP 601 C 1 
HETATM 36 H HO3' ATP . . . G 7 164.434 163.528 213.516 1 45.97 ? HO3' ATP 601 C 1 
HETATM 37 H H2' ATP . . . G 7 166.018 163.09 210.47 1 45.97 ? H2' ATP 601 C 1 
HETATM 38 H HO2' ATP . . . G 7 165.527 165.21 212 1 45.97 ? HO2' ATP 601 C 1 
HETATM 39 H H1' ATP . . . G 7 167.567 164.774 212.109 1 45.97 ? H1' ATP 601 C 1 
HETATM 40 H H8 ATP . . . G 7 168.536 161.945 209.911 1 45.97 ? H8 ATP 601 C 1 
HETATM 41 H HN61 ATP . . . G 7 171.722 165.807 206.734 1 45.97 ? HN61 ATP 601 C 1 
HETATM 42 H HN62 ATP . . . G 7 171.064 164.436 206.656 1 45.97 ? HN62 ATP 601 C 1 
HETATM 43 H H2 ATP . . . G 7 169.542 168.01 209.807 1 45.97 ? H2 ATP 601 C 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           711 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           43 
#