data_6Z3S # _model_server_result.job_id f_5WhoN0PYDr6ixOwxHjTQ _model_server_result.datetime_utc '2025-03-11 06:57:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6Z3S # _exptl.entry_id 6Z3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.22 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Z3S _cell.length_a 82.7 _cell.length_b 82.7 _cell.length_c 422.968 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1,2 B,C,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H15 N2 O7 P' _chem_comp.formula_weight 318.22 _chem_comp.id P1T _chem_comp.mon_nstd_flag . _chem_comp.name '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP1 P P1T sing 235 n n OP1 HOP1 P1T sing 236 n n P OP2 P1T doub 237 n n P OP4 P1T sing 238 n n P OP3 P1T sing 239 n n OP3 HOP3 P1T sing 240 n n OP4 C5A P1T sing 241 n n C5A C5 P1T sing 242 n n C5A H5A1 P1T sing 243 n n C5A H5A2 P1T sing 244 n n C5 C4 P1T sing 245 n y C5 C6 P1T doub 246 n y C6 N1 P1T sing 247 n y C6 H6 P1T sing 248 n n N1 C2 P1T doub 249 n y C2 C3 P1T sing 250 n y C2 C2A P1T sing 251 n n C2A H2A1 P1T sing 252 n n C2A H2A2 P1T sing 253 n n C2A H2A3 P1T sing 254 n n C3 O3A P1T sing 255 n n C3 C4 P1T doub 256 n y O3A HO3A P1T sing 257 n n C4 C4A P1T sing 258 n n C4A N P1T sing 259 n n C4A H4A1 P1T sing 260 n n C4A H4A2 P1T sing 261 n n N CA P1T sing 262 n n N HN P1T sing 263 n n CA C P1T sing 264 n n CA CB P1T doub 265 n n CB HB1 P1T sing 266 n n CB HB2 P1T sing 267 n n C OXT P1T doub 268 n n C O P1T sing 269 n n O HO P1T sing 270 n n # _atom_sites.entry_id 6Z3S _atom_sites.fract_transf_matrix[1][1] 0.012092 _atom_sites.fract_transf_matrix[1][2] 0.006981 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 P1T D 1 601 601 P1T P1T . E 2 P1T A 1 601 601 P1T P1T . F 2 P1T B 1 601 601 P1T P1T . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP1 P1T . . . F 2 25.076 -15.833 -66.453 1 59.83 ? OP1 P1T 601 B 1 HETATM 2 P P P1T . . . F 2 24.576 -15.31 -65.126 1 59.22 ? P P1T 601 B 1 HETATM 3 O OP2 P1T . . . F 2 23.2 -14.721 -65.32 1 60.58 ? OP2 P1T 601 B 1 HETATM 4 O OP3 P1T . . . F 2 25.507 -14.236 -64.616 1 59.23 ? OP3 P1T 601 B 1 HETATM 5 O OP4 P1T . . . F 2 24.471 -16.55 -64.042 1 56.29 ? OP4 P1T 601 B 1 HETATM 6 C C5A P1T . . . F 2 23.659 -17.64 -64.385 1 55.96 ? C5A P1T 601 B 1 HETATM 7 C C5 P1T . . . F 2 22.969 -18.274 -63.171 1 53.75 ? C5 P1T 601 B 1 HETATM 8 C C6 P1T . . . F 2 23.216 -19.604 -62.872 1 52.9 ? C6 P1T 601 B 1 HETATM 9 N N1 P1T . . . F 2 22.613 -20.189 -61.81 1 51.67 ? N1 P1T 601 B 1 HETATM 10 C C2 P1T . . . F 2 21.763 -19.477 -61.037 1 51.07 ? C2 P1T 601 B 1 HETATM 11 C C2A P1T . . . F 2 21.067 -20.108 -59.838 1 49.66 ? C2A P1T 601 B 1 HETATM 12 C C3 P1T . . . F 2 21.505 -18.155 -61.327 1 51.74 ? C3 P1T 601 B 1 HETATM 13 O O3A P1T . . . F 2 20.622 -17.419 -60.523 1 50.97 ? O3A P1T 601 B 1 HETATM 14 C C4 P1T . . . F 2 22.114 -17.571 -62.383 1 53.17 ? C4 P1T 601 B 1 HETATM 15 C C4A P1T . . . F 2 21.794 -16.11 -62.675 1 54.07 ? C4A P1T 601 B 1 HETATM 16 N N P1T . . . F 2 20.64 -15.71 -61.903 1 53.13 ? N P1T 601 B 1 HETATM 17 C CA P1T . . . F 2 19.922 -14.534 -62.324 1 53.77 ? CA P1T 601 B 1 HETATM 18 C CB P1T . . . F 2 19.617 -14.41 -63.595 1 55.26 ? CB P1T 601 B 1 HETATM 19 C C P1T . . . F 2 19.317 -13.619 -61.268 1 52.72 ? C P1T 601 B 1 HETATM 20 O O P1T . . . F 2 19.688 -13.721 -60.071 1 51.48 ? O P1T 601 B 1 HETATM 21 O OXT P1T . . . F 2 18.485 -12.735 -61.591 1 53.11 ? OXT P1T 601 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #