data_6Z4D # _model_server_result.job_id ZL66kg-ycsXGr3tY_QbSmg _model_server_result.datetime_utc '2024-11-24 19:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 6Z4D # _exptl.entry_id 6Z4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3R,4R)-4-fluoro-1-{6-[(3-methoxy-1-methyl-1H-pyrazol-4-yl)amino]-9-methyl-9H-purin-2-yl}pyrrolidin-3-yl]propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z4D _cell.length_a 76.61 _cell.length_b 83.9 _cell.length_c 89.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 108 A CYS 797 1_555 C C29 8BS . A 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 B SG CYS 108 B CYS 797 1_555 F C29 8BS . B 8BS 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? # _chem_comp.formula 'C18 H24 F N9 O2' _chem_comp.formula_weight 417.441 _chem_comp.id 8BS _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3R,4R)-4-fluoro-1-{6-[(3-methoxy-1-methyl-1H-pyrazol-4-yl)amino]-9-methyl-9H-purin-2-yl}pyrrolidin-3-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N12 8BS sing 44 n n C13 N12 8BS sing 45 n y C13 N14 8BS doub 46 n y N12 C10 8BS sing 47 n y N14 C9 8BS sing 48 n y C10 C9 8BS doub 49 n y C10 N11 8BS sing 50 n y C9 C8 8BS sing 51 n y C23 O22 8BS sing 52 n n O22 C21 8BS sing 53 n n N11 C6 8BS doub 54 n y C8 N16 8BS sing 55 n n C8 N7 8BS doub 56 n y N16 C17 8BS sing 57 n n C6 N7 8BS sing 58 n y C6 N4 8BS sing 59 n n F25 C2 8BS sing 60 n n C21 C17 8BS sing 61 n y C21 N20 8BS doub 62 n y C17 C18 8BS doub 63 n y C3 N4 8BS sing 64 n n C3 C2 8BS sing 65 n n N4 C5 8BS sing 66 n n N20 N19 8BS sing 67 n y C2 C1 8BS sing 68 n n C18 N19 8BS sing 69 n y C5 C1 8BS sing 70 n n N19 C24 8BS sing 71 n n C1 N26 8BS sing 72 n n N26 C27 8BS sing 73 n n C27 O30 8BS doub 74 n n C27 C28 8BS sing 75 n n C28 C29 8BS sing 76 n n C5 H1 8BS sing 77 n n C5 H2 8BS sing 78 n n C13 H3 8BS sing 79 n n C15 H4 8BS sing 80 n n C15 H5 8BS sing 81 n n C15 H6 8BS sing 82 n n C24 H7 8BS sing 83 n n C24 H8 8BS sing 84 n n C24 H9 8BS sing 85 n n C28 H10 8BS sing 86 n n C28 H11 8BS sing 87 n n C1 H12 8BS sing 88 n n C2 H13 8BS sing 89 n n C3 H14 8BS sing 90 n n C3 H15 8BS sing 91 n n N16 H16 8BS sing 92 n n C18 H17 8BS sing 93 n n C23 H18 8BS sing 94 n n C23 H19 8BS sing 95 n n C23 H20 8BS sing 96 n n N26 H21 8BS sing 97 n n C29 H22 8BS sing 98 n n C29 H23 8BS sing 99 n n C29 H24 8BS sing 100 n n # _atom_sites.entry_id 6Z4D _atom_sites.fract_transf_matrix[1][1] 0.013053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8BS A 1 1101 1101 8BS LIG . D 3 SO4 A 1 1102 2 SO4 SO4 . E 3 SO4 A 1 1103 4 SO4 SO4 . F 2 8BS B 1 1101 1101 8BS LIG . G 4 57N B 1 1102 1101 57N EAI . H 3 SO4 B 1 1103 1 SO4 SO4 . I 3 SO4 B 1 1104 3 SO4 SO4 . J 3 SO4 B 1 1105 5 SO4 SO4 . K 5 HOH A 1 1201 195 HOH HOH . K 5 HOH A 2 1202 107 HOH HOH . K 5 HOH A 3 1203 94 HOH HOH . K 5 HOH A 4 1204 84 HOH HOH . K 5 HOH A 5 1205 120 HOH HOH . K 5 HOH A 6 1206 192 HOH HOH . K 5 HOH A 7 1207 50 HOH HOH . K 5 HOH A 8 1208 105 HOH HOH . K 5 HOH A 9 1209 121 HOH HOH . K 5 HOH A 10 1210 20 HOH HOH . K 5 HOH A 11 1211 112 HOH HOH . K 5 HOH A 12 1212 154 HOH HOH . K 5 HOH A 13 1213 37 HOH HOH . K 5 HOH A 14 1214 98 HOH HOH . K 5 HOH A 15 1215 17 HOH HOH . K 5 HOH A 16 1216 65 HOH HOH . K 5 HOH A 17 1217 190 HOH HOH . K 5 HOH A 18 1218 116 HOH HOH . K 5 HOH A 19 1219 51 HOH HOH . K 5 HOH A 20 1220 169 HOH HOH . K 5 HOH A 21 1221 101 HOH HOH . K 5 HOH A 22 1222 87 HOH HOH . K 5 HOH A 23 1223 111 HOH HOH . K 5 HOH A 24 1224 177 HOH HOH . K 5 HOH A 25 1225 81 HOH HOH . K 5 HOH A 26 1226 187 HOH HOH . K 5 HOH A 27 1227 96 HOH HOH . K 5 HOH A 28 1228 78 HOH HOH . K 5 HOH A 29 1229 25 HOH HOH . K 5 HOH A 30 1230 21 HOH HOH . K 5 HOH A 31 1231 176 HOH HOH . K 5 HOH A 32 1232 35 HOH HOH . K 5 HOH A 33 1233 196 HOH HOH . K 5 HOH A 34 1234 145 HOH HOH . K 5 HOH A 35 1235 104 HOH HOH . K 5 HOH A 36 1236 18 HOH HOH . K 5 HOH A 37 1237 26 HOH HOH . K 5 HOH A 38 1238 10 HOH HOH . K 5 HOH A 39 1239 29 HOH HOH . K 5 HOH A 40 1240 46 HOH HOH . K 5 HOH A 41 1241 48 HOH HOH . K 5 HOH A 42 1242 2 HOH HOH . K 5 HOH A 43 1243 163 HOH HOH . K 5 HOH A 44 1244 103 HOH HOH . K 5 HOH A 45 1245 85 HOH HOH . K 5 HOH A 46 1246 19 HOH HOH . K 5 HOH A 47 1247 92 HOH HOH . K 5 HOH A 48 1248 27 HOH HOH . K 5 HOH A 49 1249 15 HOH HOH . K 5 HOH A 50 1250 117 HOH HOH . K 5 HOH A 51 1251 5 HOH HOH . K 5 HOH A 52 1252 49 HOH HOH . K 5 HOH A 53 1253 69 HOH HOH . K 5 HOH A 54 1254 93 HOH HOH . K 5 HOH A 55 1255 178 HOH HOH . K 5 HOH A 56 1256 28 HOH HOH . K 5 HOH A 57 1257 47 HOH HOH . K 5 HOH A 58 1258 110 HOH HOH . K 5 HOH A 59 1259 30 HOH HOH . K 5 HOH A 60 1260 108 HOH HOH . K 5 HOH A 61 1261 31 HOH HOH . K 5 HOH A 62 1262 64 HOH HOH . K 5 HOH A 63 1263 188 HOH HOH . K 5 HOH A 64 1264 22 HOH HOH . K 5 HOH A 65 1265 102 HOH HOH . K 5 HOH A 66 1266 8 HOH HOH . K 5 HOH A 67 1267 167 HOH HOH . K 5 HOH A 68 1268 9 HOH HOH . K 5 HOH A 69 1269 66 HOH HOH . K 5 HOH A 70 1270 106 HOH HOH . K 5 HOH A 71 1271 118 HOH HOH . K 5 HOH A 72 1272 71 HOH HOH . K 5 HOH A 73 1273 182 HOH HOH . K 5 HOH A 74 1274 183 HOH HOH . K 5 HOH A 75 1275 109 HOH HOH . K 5 HOH A 76 1276 52 HOH HOH . K 5 HOH A 77 1277 6 HOH HOH . K 5 HOH A 78 1278 79 HOH HOH . K 5 HOH A 79 1279 168 HOH HOH . K 5 HOH A 80 1280 191 HOH HOH . K 5 HOH A 81 1281 181 HOH HOH . K 5 HOH A 82 1282 75 HOH HOH . K 5 HOH A 83 1283 11 HOH HOH . K 5 HOH A 84 1284 1 HOH HOH . K 5 HOH A 85 1285 193 HOH HOH . K 5 HOH A 86 1286 38 HOH HOH . K 5 HOH A 87 1287 194 HOH HOH . K 5 HOH A 88 1288 58 HOH HOH . K 5 HOH A 89 1289 91 HOH HOH . K 5 HOH A 90 1290 200 HOH HOH . K 5 HOH A 91 1291 40 HOH HOH . K 5 HOH A 92 1292 97 HOH HOH . K 5 HOH A 93 1293 95 HOH HOH . K 5 HOH A 94 1294 80 HOH HOH . K 5 HOH A 95 1295 197 HOH HOH . K 5 HOH A 96 1296 62 HOH HOH . K 5 HOH A 97 1297 76 HOH HOH . K 5 HOH A 98 1298 100 HOH HOH . K 5 HOH A 99 1299 113 HOH HOH . L 5 HOH B 1 1201 124 HOH HOH . L 5 HOH B 2 1202 43 HOH HOH . L 5 HOH B 3 1203 157 HOH HOH . L 5 HOH B 4 1204 158 HOH HOH . L 5 HOH B 5 1205 129 HOH HOH . L 5 HOH B 6 1206 144 HOH HOH . L 5 HOH B 7 1207 143 HOH HOH . L 5 HOH B 8 1208 140 HOH HOH . L 5 HOH B 9 1209 88 HOH HOH . L 5 HOH B 10 1210 44 HOH HOH . L 5 HOH B 11 1211 146 HOH HOH . L 5 HOH B 12 1212 150 HOH HOH . L 5 HOH B 13 1213 70 HOH HOH . L 5 HOH B 14 1214 3 HOH HOH . L 5 HOH B 15 1215 201 HOH HOH . L 5 HOH B 16 1216 68 HOH HOH . L 5 HOH B 17 1217 147 HOH HOH . L 5 HOH B 18 1218 7 HOH HOH . L 5 HOH B 19 1219 172 HOH HOH . L 5 HOH B 20 1220 155 HOH HOH . L 5 HOH B 21 1221 90 HOH HOH . L 5 HOH B 22 1222 83 HOH HOH . L 5 HOH B 23 1223 42 HOH HOH . L 5 HOH B 24 1224 41 HOH HOH . L 5 HOH B 25 1225 14 HOH HOH . L 5 HOH B 26 1226 36 HOH HOH . L 5 HOH B 27 1227 33 HOH HOH . L 5 HOH B 28 1228 132 HOH HOH . L 5 HOH B 29 1229 127 HOH HOH . L 5 HOH B 30 1230 161 HOH HOH . L 5 HOH B 31 1231 23 HOH HOH . L 5 HOH B 32 1232 162 HOH HOH . L 5 HOH B 33 1233 134 HOH HOH . L 5 HOH B 34 1234 32 HOH HOH . L 5 HOH B 35 1235 89 HOH HOH . L 5 HOH B 36 1236 12 HOH HOH . L 5 HOH B 37 1237 128 HOH HOH . L 5 HOH B 38 1238 4 HOH HOH . L 5 HOH B 39 1239 63 HOH HOH . L 5 HOH B 40 1240 24 HOH HOH . L 5 HOH B 41 1241 74 HOH HOH . L 5 HOH B 42 1242 131 HOH HOH . L 5 HOH B 43 1243 160 HOH HOH . L 5 HOH B 44 1244 57 HOH HOH . L 5 HOH B 45 1245 53 HOH HOH . L 5 HOH B 46 1246 54 HOH HOH . L 5 HOH B 47 1247 130 HOH HOH . L 5 HOH B 48 1248 170 HOH HOH . L 5 HOH B 49 1249 61 HOH HOH . L 5 HOH B 50 1250 125 HOH HOH . L 5 HOH B 51 1251 135 HOH HOH . L 5 HOH B 52 1252 149 HOH HOH . L 5 HOH B 53 1253 164 HOH HOH . L 5 HOH B 54 1254 123 HOH HOH . L 5 HOH B 55 1255 86 HOH HOH . L 5 HOH B 56 1256 199 HOH HOH . L 5 HOH B 57 1257 13 HOH HOH . L 5 HOH B 58 1258 60 HOH HOH . L 5 HOH B 59 1259 184 HOH HOH . L 5 HOH B 60 1260 16 HOH HOH . L 5 HOH B 61 1261 34 HOH HOH . L 5 HOH B 62 1262 142 HOH HOH . L 5 HOH B 63 1263 166 HOH HOH . L 5 HOH B 64 1264 77 HOH HOH . L 5 HOH B 65 1265 189 HOH HOH . L 5 HOH B 66 1266 126 HOH HOH . L 5 HOH B 67 1267 67 HOH HOH . L 5 HOH B 68 1268 139 HOH HOH . L 5 HOH B 69 1269 45 HOH HOH . L 5 HOH B 70 1270 151 HOH HOH . L 5 HOH B 71 1271 59 HOH HOH . L 5 HOH B 72 1272 153 HOH HOH . L 5 HOH B 73 1273 114 HOH HOH . L 5 HOH B 74 1274 202 HOH HOH . L 5 HOH B 75 1275 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 8BS . . . C 2 -47.125 -13.599 1.71 1 50 ? C5 8BS 1101 A 1 HETATM 2 C C6 8BS . . . C 2 -45.041 -12.222 1.976 1 41.75 ? C6 8BS 1101 A 1 HETATM 3 C C8 8BS . . . C 2 -42.745 -13.183 2.18 1 41.06 ? C8 8BS 1101 A 1 HETATM 4 C C10 8BS . . . C 2 -43.038 -10.675 2.175 1 40.52 ? C10 8BS 1101 A 1 HETATM 5 N N12 8BS . . . C 2 -42.333 -9.553 2.247 1 41.7 ? N12 8BS 1101 A 1 HETATM 6 C C13 8BS . . . C 2 -41.025 -9.895 2.364 1 41.63 ? C13 8BS 1101 A 1 HETATM 7 C C15 8BS . . . C 2 -42.904 -8.223 2.205 1 37.94 ? C15 8BS 1101 A 1 HETATM 8 C C17 8BS . . . C 2 -42.332 -15.69 1.716 1 47.02 ? C17 8BS 1101 A 1 HETATM 9 C C21 8BS . . . C 2 -41.565 -16.594 1.002 1 47.05 ? C21 8BS 1101 A 1 HETATM 10 C C24 8BS . . . C 2 -44.743 -18.313 1.126 1 47.03 ? C24 8BS 1101 A 1 HETATM 11 C C28 8BS . . . C 2 -49.613 -13.389 5.843 1 46.7 ? C28 8BS 1101 A 1 HETATM 12 C C1 8BS . . . C 2 -48.727 -13.187 1.958 1 50.86 ? C1 8BS 1101 A 1 HETATM 13 C C2 8BS . . . C 2 -48.848 -12.122 1.296 1 48.66 ? C2 8BS 1101 A 1 HETATM 14 C C3 8BS . . . C 2 -47.543 -11.29 1.798 1 45.57 ? C3 8BS 1101 A 1 HETATM 15 N N4 8BS . . . C 2 -46.492 -12.413 1.844 1 46.69 ? N4 8BS 1101 A 1 HETATM 16 N N7 8BS . . . C 2 -44.163 -13.372 2.048 1 40.64 ? N7 8BS 1101 A 1 HETATM 17 C C9 8BS . . . C 2 -42.188 -11.744 2.242 1 41.76 ? C9 8BS 1101 A 1 HETATM 18 N N11 8BS . . . C 2 -44.532 -10.871 2.035 1 40.15 ? N11 8BS 1101 A 1 HETATM 19 N N14 8BS . . . C 2 -40.947 -11.253 2.36 1 41.45 ? N14 8BS 1101 A 1 HETATM 20 N N16 8BS . . . C 2 -41.861 -14.379 2.249 1 44.39 ? N16 8BS 1101 A 1 HETATM 21 C C18 8BS . . . C 2 -43.587 -16.225 1.843 1 48.33 ? C18 8BS 1101 A 1 HETATM 22 N N19 8BS . . . C 2 -43.602 -17.413 1.227 1 49.51 ? N19 8BS 1101 A 1 HETATM 23 N N20 8BS . . . C 2 -42.327 -17.64 0.702 1 47.41 ? N20 8BS 1101 A 1 HETATM 24 O O22 8BS . . . C 2 -40.204 -16.438 0.649 1 48.55 ? O22 8BS 1101 A 1 HETATM 25 C C23 8BS . . . C 2 -39.656 -17.582 0.01 1 48.13 ? C23 8BS 1101 A 1 HETATM 26 F F25 8BS . . . C 2 -48.665 -12.392 -0.095 1 49.08 ? F25 8BS 1101 A 1 HETATM 27 N N26 8BS . . . C 2 -48.913 -12.824 3.409 1 54.92 ? N26 8BS 1101 A 1 HETATM 28 C C27 8BS . . . C 2 -49.428 -13.812 4.365 1 55.71 ? C27 8BS 1101 A 1 HETATM 29 C C29 8BS . . . C 2 -49.433 -14.65 6.688 1 36.81 ? C29 8BS 1101 A 1 HETATM 30 O O30 8BS . . . C 2 -49.688 -14.923 4.022 1 61.58 ? O30 8BS 1101 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #