data_6Z4H
#
_model_server_result.job_id            XwZy93OsnS-W2qt7bA1McA 
_model_server_result.datetime_utc      '2024-11-01 21:28:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z4h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6Z4H 
#
_exptl.entry_id    6Z4H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.664 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(4-chlorophenyl)methyl]-2-selanyl-benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.759 
_cell.angle_gamma         90 
_cell.entry_id            6Z4H 
_cell.length_a            38.613 
_cell.length_b            68.289 
_cell.length_c            50.899 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z4H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 57 AAA CYS 57 1_555 A SG CYS 146 AAA CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
disulf ? disulf2 B SG CYS 57 BBB CYS 57 1_555 B SG CYS 146 BBB CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
covale ? covale1 A SG CYS 111 AAA CYS 111 1_555 D SE LQW . AAA LQW 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
covale ? covale2 B SG CYS 111 BBB CYS 111 1_555 H SE LQW . BBB LQW 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc1 A ND1 HIS 46 AAA HIS 46 1_555 F ZN ZN . AAA ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 A NE2 HIS 48 AAA HIS 48 1_555 F ZN ZN . AAA ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc3 A ND1 HIS 63 AAA HIS 63 1_555 C ZN ZN . AAA ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc4 A ND1 HIS 71 AAA HIS 71 1_555 C ZN ZN . AAA ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc5 A ND1 HIS 80 AAA HIS 80 1_555 C ZN ZN . AAA ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? 
metalc ? metalc6 A OD1 ASP 83 AAA ASP 83 1_555 C ZN ZN . AAA ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc7 A NE2 HIS 120 AAA HIS 120 1_555 F ZN ZN . AAA ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? 
metalc ? metalc8 E O2 SO4 . AAA SO4 203 1_555 F ZN ZN . AAA ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc9 B ND1 HIS 46 BBB HIS 46 1_555 J ZN ZN . BBB ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc10 B NE2 HIS 48 BBB HIS 48 1_555 J ZN ZN . BBB ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc11 B ND1 HIS 63 BBB HIS 63 1_555 G ZN ZN . BBB ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc12 B ND1 HIS 71 BBB HIS 71 1_555 G ZN ZN . BBB ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc13 B ND1 HIS 80 BBB HIS 80 1_555 G ZN ZN . BBB ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? 
metalc ? metalc14 B OD1 ASP 83 BBB ASP 83 1_555 G ZN ZN . BBB ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
#
_chem_comp.formula           'C14 H12 Cl N O Se' 
_chem_comp.formula_weight    324.664 
_chem_comp.id                LQW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(4-chlorophenyl)methyl]-2-selanyl-benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C11 LQW sing 194 n n 
C12 C11 LQW doub 195 n y 
C12 C13 LQW sing 196 n y 
C11 C10 LQW sing 197 n y 
C13 C8 LQW doub 198 n y 
SE C4 LQW sing 199 n n 
C10 C9 LQW doub 200 n y 
C8 C9 LQW sing 201 n y 
C8 C7 LQW sing 202 n n 
C4 C3 LQW doub 203 n y 
C4 C5 LQW sing 204 n y 
C3 C2 LQW sing 205 n y 
C7 N LQW sing 206 n n 
N C6 LQW sing 207 n n 
C6 C5 LQW sing 208 n n 
C6 O LQW doub 209 n n 
C5 C LQW doub 210 n y 
C2 C1 LQW doub 211 n y 
C C1 LQW sing 212 n y 
C1 H1 LQW sing 213 n n 
C2 H2 LQW sing 214 n n 
C3 H3 LQW sing 215 n n 
C7 H4 LQW sing 216 n n 
C7 H5 LQW sing 217 n n 
C9 H6 LQW sing 218 n n 
C13 H7 LQW sing 219 n n 
C10 H8 LQW sing 220 n n 
C12 H9 LQW sing 221 n n 
N H10 LQW sing 222 n n 
C H11 LQW sing 223 n n 
SE H12 LQW sing 224 n n 
#
_atom_sites.entry_id                     6Z4H 
_atom_sites.fract_transf_matrix[1][1]    0.025898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN AAA 1 201 154 ZN ZN . 
D 3 LQW AAA 1 202 201 LQW CP4 . 
E 4 SO4 AAA 1 203 1 SO4 SO4 . 
F 2 ZN AAA 1 204 1 ZN ZN . 
G 2 ZN BBB 1 201 154 ZN ZN . 
H 3 LQW BBB 1 202 201 LQW CP4 . 
I 4 SO4 BBB 1 203 2 SO4 SO4 . 
J 2 ZN BBB 1 204 2 ZN ZN . 
K 5 HOH AAA 1 301 80 HOH HOH . 
K 5 HOH AAA 2 302 93 HOH HOH . 
K 5 HOH AAA 3 303 96 HOH HOH . 
K 5 HOH AAA 4 304 56 HOH HOH . 
K 5 HOH AAA 5 305 62 HOH HOH . 
K 5 HOH AAA 6 306 40 HOH HOH . 
K 5 HOH AAA 7 307 52 HOH HOH . 
K 5 HOH AAA 8 308 44 HOH HOH . 
K 5 HOH AAA 9 309 58 HOH HOH . 
K 5 HOH AAA 10 310 63 HOH HOH . 
K 5 HOH AAA 11 311 95 HOH HOH . 
K 5 HOH AAA 12 312 84 HOH HOH . 
K 5 HOH AAA 13 313 49 HOH HOH . 
K 5 HOH AAA 14 314 57 HOH HOH . 
K 5 HOH AAA 15 315 64 HOH HOH . 
K 5 HOH AAA 16 316 59 HOH HOH . 
K 5 HOH AAA 17 317 4 HOH HOH . 
K 5 HOH AAA 18 318 3 HOH HOH . 
K 5 HOH AAA 19 319 35 HOH HOH . 
K 5 HOH AAA 20 320 50 HOH HOH . 
K 5 HOH AAA 21 321 8 HOH HOH . 
K 5 HOH AAA 22 322 55 HOH HOH . 
K 5 HOH AAA 23 323 46 HOH HOH . 
K 5 HOH AAA 24 324 53 HOH HOH . 
K 5 HOH AAA 25 325 77 HOH HOH . 
K 5 HOH AAA 26 326 60 HOH HOH . 
K 5 HOH AAA 27 327 9 HOH HOH . 
K 5 HOH AAA 28 328 47 HOH HOH . 
K 5 HOH AAA 29 329 51 HOH HOH . 
K 5 HOH AAA 30 330 79 HOH HOH . 
K 5 HOH AAA 31 331 48 HOH HOH . 
K 5 HOH AAA 32 332 19 HOH HOH . 
K 5 HOH AAA 33 333 90 HOH HOH . 
K 5 HOH AAA 34 334 82 HOH HOH . 
K 5 HOH AAA 35 335 36 HOH HOH . 
K 5 HOH AAA 36 336 23 HOH HOH . 
K 5 HOH AAA 37 337 94 HOH HOH . 
L 5 HOH BBB 1 301 81 HOH HOH . 
L 5 HOH BBB 2 302 2 HOH HOH . 
L 5 HOH BBB 3 303 1 HOH HOH . 
L 5 HOH BBB 4 304 87 HOH HOH . 
L 5 HOH BBB 5 305 38 HOH HOH . 
L 5 HOH BBB 6 306 78 HOH HOH . 
L 5 HOH BBB 7 307 69 HOH HOH . 
L 5 HOH BBB 8 308 61 HOH HOH . 
L 5 HOH BBB 9 309 27 HOH HOH . 
L 5 HOH BBB 10 310 92 HOH HOH . 
L 5 HOH BBB 11 311 89 HOH HOH . 
L 5 HOH BBB 12 312 68 HOH HOH . 
L 5 HOH BBB 13 313 10 HOH HOH . 
L 5 HOH BBB 14 314 21 HOH HOH . 
L 5 HOH BBB 15 315 39 HOH HOH . 
L 5 HOH BBB 16 316 28 HOH HOH . 
L 5 HOH BBB 17 317 6 HOH HOH . 
L 5 HOH BBB 18 318 34 HOH HOH . 
L 5 HOH BBB 19 319 70 HOH HOH . 
L 5 HOH BBB 20 320 30 HOH HOH . 
L 5 HOH BBB 21 321 42 HOH HOH . 
L 5 HOH BBB 22 322 76 HOH HOH . 
L 5 HOH BBB 23 323 75 HOH HOH . 
L 5 HOH BBB 24 324 73 HOH HOH . 
L 5 HOH BBB 25 325 13 HOH HOH . 
L 5 HOH BBB 26 326 41 HOH HOH . 
L 5 HOH BBB 27 327 67 HOH HOH . 
L 5 HOH BBB 28 328 31 HOH HOH . 
L 5 HOH BBB 29 329 12 HOH HOH . 
L 5 HOH BBB 30 330 88 HOH HOH . 
L 5 HOH BBB 31 331 43 HOH HOH . 
L 5 HOH BBB 32 332 7 HOH HOH . 
L 5 HOH BBB 33 333 25 HOH HOH . 
L 5 HOH BBB 34 334 22 HOH HOH . 
L 5 HOH BBB 35 335 11 HOH HOH . 
L 5 HOH BBB 36 336 5 HOH HOH . 
L 5 HOH BBB 37 337 24 HOH HOH . 
L 5 HOH BBB 38 338 71 HOH HOH . 
L 5 HOH BBB 39 339 83 HOH HOH . 
L 5 HOH BBB 40 340 20 HOH HOH . 
L 5 HOH BBB 41 341 32 HOH HOH . 
L 5 HOH BBB 42 342 29 HOH HOH . 
L 5 HOH BBB 43 343 18 HOH HOH . 
L 5 HOH BBB 44 344 91 HOH HOH . 
L 5 HOH BBB 45 345 66 HOH HOH . 
L 5 HOH BBB 46 346 72 HOH HOH . 
L 5 HOH BBB 47 347 17 HOH HOH . 
L 5 HOH BBB 48 348 74 HOH HOH . 
L 5 HOH BBB 49 349 14 HOH HOH . 
L 5 HOH BBB 50 350 37 HOH HOH . 
L 5 HOH BBB 51 351 33 HOH HOH . 
L 5 HOH BBB 52 352 15 HOH HOH . 
L 5 HOH BBB 53 353 16 HOH HOH . 
L 5 HOH BBB 54 354 85 HOH HOH . 
L 5 HOH BBB 55 355 65 HOH HOH . 
L 5 HOH BBB 56 356 26 HOH HOH . 
L 5 HOH BBB 57 357 54 HOH HOH . 
L 5 HOH BBB 58 358 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LQW . . . D 3 -2.82 -1.609 6.24 1 84.22 ? C1 LQW 202 AAA 1 
HETATM 2 C C2 LQW . . . D 3 -1.954 -2.689 6.117 1 80.7 ? C2 LQW 202 AAA 1 
HETATM 3 C C3 LQW . . . D 3 -0.643 -2.498 5.674 1 76.51 ? C3 LQW 202 AAA 1 
HETATM 4 C C5 LQW . . . D 3 -1.085 -0.088 5.469 1 78.74 ? C5 LQW 202 AAA 1 
HETATM 5 C C6 LQW . . . D 3 -0.692 1.332 5.173 1 76.27 ? C6 LQW 202 AAA 1 
HETATM 6 C C7 LQW . . . D 3 0.495 3.331 6.104 1 67.17 ? C7 LQW 202 AAA 1 
HETATM 7 C C8 LQW . . . D 3 1.436 3.941 5.08 1 63.23 ? C8 LQW 202 AAA 1 
HETATM 8 C C9 LQW . . . D 3 2.252 3.124 4.302 1 63.31 ? C9 LQW 202 AAA 1 
HETATM 9 C C13 LQW . . . D 3 1.478 5.317 4.889 1 61.66 ? C13 LQW 202 AAA 1 
HETATM 10 CL CL LQW . . . D 3 4.298 5.704 1.929 1 64.46 ? CL LQW 202 AAA 1 
HETATM 11 C C11 LQW . . . D 3 3.17 5.048 3.172 1 65.06 ? C11 LQW 202 AAA 1 
HETATM 12 C C10 LQW . . . D 3 3.098 3.666 3.348 1 61.67 ? C10 LQW 202 AAA 1 
HETATM 13 C C12 LQW . . . D 3 2.339 5.88 3.935 1 62.29 ? C12 LQW 202 AAA 1 
HETATM 14 N N LQW . . . D 3 0.282 1.891 5.925 1 73.12 ? N LQW 202 AAA 1 
HETATM 15 O O LQW . . . D 3 -1.359 1.936 4.345 1 84.47 ? O LQW 202 AAA 1 
HETATM 16 C C LQW . . . D 3 -2.395 -0.318 5.927 1 81.35 ? C LQW 202 AAA 1 
HETATM 17 C C4 LQW . . . D 3 -0.134 -1.245 5.327 1 73.39 ? C4 LQW 202 AAA 1 
HETATM 18 SE SE LQW . . . D 3 1.373 -1.104 4.819 1 52.36 ? SE LQW 202 AAA 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#