data_6Z4R # _model_server_result.job_id Xq0oqOaQtzvSJVBoYhgDRQ _model_server_result.datetime_utc '2024-12-26 21:54:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6Z4R # _exptl.entry_id 6Z4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z4R _cell.length_a 40.063 _cell.length_b 47.26 _cell.length_c 76.213 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 92 A SER 92 1_555 A N Q78 93 A Q78 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C Q78 93 A Q78 93 1_555 A N ALA 94 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B FE HEM . A HEM 201 1_555 C O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 6Z4R _atom_sites.fract_transf_matrix[1][1] 0.024961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 HOH A 1 301 33 HOH HOH . C 3 HOH A 2 302 28 HOH HOH . C 3 HOH A 3 303 22 HOH HOH . C 3 HOH A 4 304 10 HOH HOH . C 3 HOH A 5 305 3 HOH HOH . C 3 HOH A 6 306 11 HOH HOH . C 3 HOH A 7 307 2 HOH HOH . C 3 HOH A 8 308 50 HOH HOH . C 3 HOH A 9 309 13 HOH HOH . C 3 HOH A 10 310 20 HOH HOH . C 3 HOH A 11 311 14 HOH HOH . C 3 HOH A 12 312 23 HOH HOH . C 3 HOH A 13 313 54 HOH HOH . C 3 HOH A 14 314 31 HOH HOH . C 3 HOH A 15 315 8 HOH HOH . C 3 HOH A 16 316 7 HOH HOH . C 3 HOH A 17 317 53 HOH HOH . C 3 HOH A 18 318 37 HOH HOH . C 3 HOH A 19 319 18 HOH HOH . C 3 HOH A 20 320 5 HOH HOH . C 3 HOH A 21 321 26 HOH HOH . C 3 HOH A 22 322 59 HOH HOH . C 3 HOH A 23 323 21 HOH HOH . C 3 HOH A 24 324 12 HOH HOH . C 3 HOH A 25 325 64 HOH HOH . C 3 HOH A 26 326 42 HOH HOH . C 3 HOH A 27 327 58 HOH HOH . C 3 HOH A 28 328 4 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 9 HOH HOH . C 3 HOH A 31 331 27 HOH HOH . C 3 HOH A 32 332 60 HOH HOH . C 3 HOH A 33 333 25 HOH HOH . C 3 HOH A 34 334 6 HOH HOH . C 3 HOH A 35 335 30 HOH HOH . C 3 HOH A 36 336 43 HOH HOH . C 3 HOH A 37 337 1 HOH HOH . C 3 HOH A 38 338 16 HOH HOH . C 3 HOH A 39 339 24 HOH HOH . C 3 HOH A 40 340 52 HOH HOH . C 3 HOH A 41 341 49 HOH HOH . C 3 HOH A 42 342 15 HOH HOH . C 3 HOH A 43 343 46 HOH HOH . C 3 HOH A 44 344 55 HOH HOH . C 3 HOH A 45 345 69 HOH HOH . C 3 HOH A 46 346 56 HOH HOH . C 3 HOH A 47 347 17 HOH HOH . C 3 HOH A 48 348 36 HOH HOH . C 3 HOH A 49 349 48 HOH HOH . C 3 HOH A 50 350 35 HOH HOH . C 3 HOH A 51 351 67 HOH HOH . C 3 HOH A 52 352 68 HOH HOH . C 3 HOH A 53 353 44 HOH HOH . C 3 HOH A 54 354 51 HOH HOH . C 3 HOH A 55 355 47 HOH HOH . C 3 HOH A 56 356 32 HOH HOH . C 3 HOH A 57 357 19 HOH HOH . C 3 HOH A 58 358 66 HOH HOH . C 3 HOH A 59 359 45 HOH HOH . C 3 HOH A 60 360 39 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 63 HOH HOH . C 3 HOH A 63 363 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -5.796 8.818 -9.439 1 32.66 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -5.114 6.524 -5.226 1 21.9 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -4.654 2.398 -7.644 1 20.4 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -5.993 4.625 -11.751 1 23.99 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -5.66 8.533 -8.105 1 27.3 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -5.783 9.51 -7.049 1 26.47 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -5.583 8.873 -5.885 1 26.19 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -5.34 7.479 -6.176 1 21.93 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -5.601 9.465 -4.459 1 25.38 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -6.062 11.016 -7.28 1 28.89 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -7.373 11.442 -6.618 1 34.62 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -8.571 10.876 -7.333 1 38.97 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -9.572 10.606 -6.637 1 48.89 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -8.551 10.683 -8.574 1 40.93 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -4.898 5.211 -5.496 1 19.41 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -4.535 4.199 -4.539 1 18.68 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -4.423 3.039 -5.202 1 19.5 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -4.674 3.311 -6.611 1 21.83 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -4.37 4.464 -3.027 1 19.65 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -4.037 1.649 -4.628 1 19.43 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -3.18 1.501 -3.595 1 19.43 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -4.993 2.646 -8.957 1 20.41 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -5.041 1.658 -10.023 1 22.03 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -5.417 2.286 -11.153 1 24.81 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -5.606 3.676 -10.836 1 25.03 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -4.71 0.165 -9.807 1 21.31 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -5.623 1.782 -12.595 1 22.84 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -5.121 0.631 -13.034 1 23.96 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -5.994 5.962 -11.497 1 27.41 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -6.152 6.994 -12.489 1 31.09 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -6.103 8.162 -11.855 1 36.96 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -5.906 7.894 -10.441 1 31.39 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -6.346 6.762 -13.996 1 29.85 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -6.202 9.556 -12.509 1 43.35 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -4.76 10.003 -12.766 1 46.05 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -4.665 11.452 -13.179 1 54.94 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -4.614 12.332 -12.281 1 56.93 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -4.625 11.73 -14.405 1 54.28 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -5.406 7.291 -7.54 1 22.32 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -4.979 4.651 -6.743 1 23.55 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -5.337 3.876 -9.493 1 24.22 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -5.846 6.538 -10.254 1 26.73 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -5.112 5.642 -8.492 1 28.25 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #