data_6Z4Y # _model_server_result.job_id VM-ftHNRuj5aLiLb216P2Q _model_server_result.datetime_utc '2024-11-22 20:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6Z4Y # _exptl.entry_id 6Z4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Z4Y _cell.length_a 82.83 _cell.length_b 82.83 _cell.length_c 173.301 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 6Z4Y _atom_sites.fract_transf_matrix[1][1] 0.012073 _atom_sites.fract_transf_matrix[1][2] 0.00697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 501 1 CIT CIT . C 2 CIT A 1 502 2 CIT CIT . D 3 EDO A 1 503 5 EDO EDO . E 3 EDO A 1 504 6 EDO EDO . F 3 EDO A 1 505 7 EDO EDO . G 3 EDO A 1 506 8 EDO EDO . H 3 EDO A 1 507 9 EDO EDO . I 4 Q7Q A 1 508 1 Q7Q XXX . J 5 HOH A 1 601 28 HOH HOH . J 5 HOH A 2 602 1 HOH HOH . J 5 HOH A 3 603 112 HOH HOH . J 5 HOH A 4 604 140 HOH HOH . J 5 HOH A 5 605 11 HOH HOH . J 5 HOH A 6 606 13 HOH HOH . J 5 HOH A 7 607 9 HOH HOH . J 5 HOH A 8 608 33 HOH HOH . J 5 HOH A 9 609 17 HOH HOH . J 5 HOH A 10 610 79 HOH HOH . J 5 HOH A 11 611 71 HOH HOH . J 5 HOH A 12 612 94 HOH HOH . J 5 HOH A 13 613 107 HOH HOH . J 5 HOH A 14 614 19 HOH HOH . J 5 HOH A 15 615 68 HOH HOH . J 5 HOH A 16 616 78 HOH HOH . J 5 HOH A 17 617 58 HOH HOH . J 5 HOH A 18 618 32 HOH HOH . J 5 HOH A 19 619 113 HOH HOH . J 5 HOH A 20 620 109 HOH HOH . J 5 HOH A 21 621 27 HOH HOH . J 5 HOH A 22 622 91 HOH HOH . J 5 HOH A 23 623 43 HOH HOH . J 5 HOH A 24 624 117 HOH HOH . J 5 HOH A 25 625 20 HOH HOH . J 5 HOH A 26 626 80 HOH HOH . J 5 HOH A 27 627 31 HOH HOH . J 5 HOH A 28 628 6 HOH HOH . J 5 HOH A 29 629 118 HOH HOH . J 5 HOH A 30 630 24 HOH HOH . J 5 HOH A 31 631 23 HOH HOH . J 5 HOH A 32 632 14 HOH HOH . J 5 HOH A 33 633 82 HOH HOH . J 5 HOH A 34 634 138 HOH HOH . J 5 HOH A 35 635 29 HOH HOH . J 5 HOH A 36 636 133 HOH HOH . J 5 HOH A 37 637 36 HOH HOH . J 5 HOH A 38 638 41 HOH HOH . J 5 HOH A 39 639 108 HOH HOH . J 5 HOH A 40 640 99 HOH HOH . J 5 HOH A 41 641 73 HOH HOH . J 5 HOH A 42 642 38 HOH HOH . J 5 HOH A 43 643 46 HOH HOH . J 5 HOH A 44 644 123 HOH HOH . J 5 HOH A 45 645 127 HOH HOH . J 5 HOH A 46 646 8 HOH HOH . J 5 HOH A 47 647 4 HOH HOH . J 5 HOH A 48 648 15 HOH HOH . J 5 HOH A 49 649 75 HOH HOH . J 5 HOH A 50 650 22 HOH HOH . J 5 HOH A 51 651 92 HOH HOH . J 5 HOH A 52 652 139 HOH HOH . J 5 HOH A 53 653 49 HOH HOH . J 5 HOH A 54 654 59 HOH HOH . J 5 HOH A 55 655 104 HOH HOH . J 5 HOH A 56 656 42 HOH HOH . J 5 HOH A 57 657 137 HOH HOH . J 5 HOH A 58 658 119 HOH HOH . J 5 HOH A 59 659 37 HOH HOH . J 5 HOH A 60 660 18 HOH HOH . J 5 HOH A 61 661 3 HOH HOH . J 5 HOH A 62 662 93 HOH HOH . J 5 HOH A 63 663 12 HOH HOH . J 5 HOH A 64 664 102 HOH HOH . J 5 HOH A 65 665 30 HOH HOH . J 5 HOH A 66 666 132 HOH HOH . J 5 HOH A 67 667 89 HOH HOH . J 5 HOH A 68 668 26 HOH HOH . J 5 HOH A 69 669 63 HOH HOH . J 5 HOH A 70 670 70 HOH HOH . J 5 HOH A 71 671 111 HOH HOH . J 5 HOH A 72 672 76 HOH HOH . J 5 HOH A 73 673 116 HOH HOH . J 5 HOH A 74 674 125 HOH HOH . J 5 HOH A 75 675 50 HOH HOH . J 5 HOH A 76 676 48 HOH HOH . J 5 HOH A 77 677 47 HOH HOH . J 5 HOH A 78 678 129 HOH HOH . J 5 HOH A 79 679 72 HOH HOH . J 5 HOH A 80 680 98 HOH HOH . J 5 HOH A 81 681 120 HOH HOH . J 5 HOH A 82 682 115 HOH HOH . J 5 HOH A 83 683 74 HOH HOH . J 5 HOH A 84 684 122 HOH HOH . J 5 HOH A 85 685 57 HOH HOH . J 5 HOH A 86 686 136 HOH HOH . J 5 HOH A 87 687 69 HOH HOH . J 5 HOH A 88 688 77 HOH HOH . J 5 HOH A 89 689 135 HOH HOH . J 5 HOH A 90 690 130 HOH HOH . J 5 HOH A 91 691 121 HOH HOH . J 5 HOH A 92 692 131 HOH HOH . J 5 HOH A 93 693 126 HOH HOH . J 5 HOH A 94 694 10 HOH HOH . J 5 HOH A 95 695 53 HOH HOH . J 5 HOH A 96 696 16 HOH HOH . J 5 HOH A 97 697 100 HOH HOH . J 5 HOH A 98 698 62 HOH HOH . J 5 HOH A 99 699 56 HOH HOH . J 5 HOH A 100 700 85 HOH HOH . J 5 HOH A 101 701 114 HOH HOH . J 5 HOH A 102 702 65 HOH HOH . J 5 HOH A 103 703 66 HOH HOH . J 5 HOH A 104 704 35 HOH HOH . J 5 HOH A 105 705 101 HOH HOH . J 5 HOH A 106 706 96 HOH HOH . J 5 HOH A 107 707 51 HOH HOH . J 5 HOH A 108 708 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 28.544 36.583 16.606 1 69.2 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 3 29.851 35.984 16.742 1 71.31 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 3 27.925 36.908 17.963 1 67.39 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 3 27.173 35.763 18.388 1 69.43 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #