data_6Z59 # _model_server_result.job_id S129F1oy3bIJ2h4uy8kL5A _model_server_result.datetime_utc '2024-12-23 05:26:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6Z59 # _exptl.entry_id 6Z59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 11-oxa-8,14,18,19,22-pentazatetracyclo[13.5.2.12,6.018,21]tricosa-1(21),2,4,6(23),15(22),16,19-heptaen-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z59 _cell.length_a 69.159 _cell.length_b 78.29 _cell.length_c 86.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 113 A GLU 554 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A O PHE 115 A PHE 556 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A OG SER 243 A SER 684 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 C NA NA . A NA 802 1_555 D O HOH . A HOH 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'C17 H17 N5 O2' _chem_comp.formula_weight 323.349 _chem_comp.id Q98 _chem_comp.mon_nstd_flag . _chem_comp.name 11-oxa-8,14,18,19,22-pentazatetracyclo[13.5.2.12,6.018,21]tricosa-1(21),2,4,6(23),15(22),16,19-heptaen-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C9 Q98 doub 277 n y N2 N1 Q98 sing 278 n y C9 C8 Q98 sing 279 n y N1 C6 Q98 sing 280 n y N1 C7 Q98 sing 281 n y C11 C12 Q98 doub 282 n y C11 C10 Q98 sing 283 n y C8 C10 Q98 sing 284 n n C8 C7 Q98 doub 285 n y C6 C5 Q98 doub 286 n y C12 C13 Q98 sing 287 n y C10 C15 Q98 doub 288 n y C7 N4 Q98 sing 289 n y C5 C4 Q98 sing 290 n y C13 C14 Q98 doub 291 n y C15 C14 Q98 sing 292 n y N4 C4 Q98 doub 293 n y C4 N Q98 sing 294 n n C14 C16 Q98 sing 295 n n N C3 Q98 sing 296 n n C16 O1 Q98 doub 297 n n C16 N3 Q98 sing 298 n n C3 C2 Q98 sing 299 n n N3 C Q98 sing 300 n n C2 O Q98 sing 301 n n O C1 Q98 sing 302 n n C C1 Q98 sing 303 n n C5 H1 Q98 sing 304 n n C6 H2 Q98 sing 305 n n C9 H3 Q98 sing 306 n n C11 H4 Q98 sing 307 n n C12 H5 Q98 sing 308 n n N3 H6 Q98 sing 309 n n C13 H7 Q98 sing 310 n n C15 H8 Q98 sing 311 n n C H9 Q98 sing 312 n n C H10 Q98 sing 313 n n N H11 Q98 sing 314 n n C3 H12 Q98 sing 315 n n C3 H13 Q98 sing 316 n n C2 H14 Q98 sing 317 n n C2 H15 Q98 sing 318 n n C1 H16 Q98 sing 319 n n C1 H17 Q98 sing 320 n n # _atom_sites.entry_id 6Z59 _atom_sites.fract_transf_matrix[1][1] 0.014459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q98 A 1 801 1 Q98 XXX . C 3 NA A 1 802 1 NA NA . D 4 HOH A 1 901 47 HOH HOH . D 4 HOH A 2 902 169 HOH HOH . D 4 HOH A 3 903 170 HOH HOH . D 4 HOH A 4 904 87 HOH HOH . D 4 HOH A 5 905 28 HOH HOH . D 4 HOH A 6 906 162 HOH HOH . D 4 HOH A 7 907 43 HOH HOH . D 4 HOH A 8 908 6 HOH HOH . D 4 HOH A 9 909 175 HOH HOH . D 4 HOH A 10 910 172 HOH HOH . D 4 HOH A 11 911 201 HOH HOH . D 4 HOH A 12 912 123 HOH HOH . D 4 HOH A 13 913 38 HOH HOH . D 4 HOH A 14 914 77 HOH HOH . D 4 HOH A 15 915 49 HOH HOH . D 4 HOH A 16 916 24 HOH HOH . D 4 HOH A 17 917 73 HOH HOH . D 4 HOH A 18 918 99 HOH HOH . D 4 HOH A 19 919 117 HOH HOH . D 4 HOH A 20 920 183 HOH HOH . D 4 HOH A 21 921 164 HOH HOH . D 4 HOH A 22 922 209 HOH HOH . D 4 HOH A 23 923 50 HOH HOH . D 4 HOH A 24 924 74 HOH HOH . D 4 HOH A 25 925 150 HOH HOH . D 4 HOH A 26 926 193 HOH HOH . D 4 HOH A 27 927 125 HOH HOH . D 4 HOH A 28 928 62 HOH HOH . D 4 HOH A 29 929 141 HOH HOH . D 4 HOH A 30 930 88 HOH HOH . D 4 HOH A 31 931 109 HOH HOH . D 4 HOH A 32 932 57 HOH HOH . D 4 HOH A 33 933 51 HOH HOH . D 4 HOH A 34 934 3 HOH HOH . D 4 HOH A 35 935 21 HOH HOH . D 4 HOH A 36 936 72 HOH HOH . D 4 HOH A 37 937 18 HOH HOH . D 4 HOH A 38 938 39 HOH HOH . D 4 HOH A 39 939 36 HOH HOH . D 4 HOH A 40 940 37 HOH HOH . D 4 HOH A 41 941 142 HOH HOH . D 4 HOH A 42 942 4 HOH HOH . D 4 HOH A 43 943 177 HOH HOH . D 4 HOH A 44 944 67 HOH HOH . D 4 HOH A 45 945 45 HOH HOH . D 4 HOH A 46 946 171 HOH HOH . D 4 HOH A 47 947 168 HOH HOH . D 4 HOH A 48 948 194 HOH HOH . D 4 HOH A 49 949 64 HOH HOH . D 4 HOH A 50 950 85 HOH HOH . D 4 HOH A 51 951 215 HOH HOH . D 4 HOH A 52 952 155 HOH HOH . D 4 HOH A 53 953 94 HOH HOH . D 4 HOH A 54 954 206 HOH HOH . D 4 HOH A 55 955 213 HOH HOH . D 4 HOH A 56 956 63 HOH HOH . D 4 HOH A 57 957 197 HOH HOH . D 4 HOH A 58 958 143 HOH HOH . D 4 HOH A 59 959 65 HOH HOH . D 4 HOH A 60 960 115 HOH HOH . D 4 HOH A 61 961 111 HOH HOH . D 4 HOH A 62 962 105 HOH HOH . D 4 HOH A 63 963 104 HOH HOH . D 4 HOH A 64 964 71 HOH HOH . D 4 HOH A 65 965 153 HOH HOH . D 4 HOH A 66 966 196 HOH HOH . D 4 HOH A 67 967 107 HOH HOH . D 4 HOH A 68 968 121 HOH HOH . D 4 HOH A 69 969 19 HOH HOH . D 4 HOH A 70 970 154 HOH HOH . D 4 HOH A 71 971 29 HOH HOH . D 4 HOH A 72 972 118 HOH HOH . D 4 HOH A 73 973 130 HOH HOH . D 4 HOH A 74 974 96 HOH HOH . D 4 HOH A 75 975 190 HOH HOH . D 4 HOH A 76 976 61 HOH HOH . D 4 HOH A 77 977 68 HOH HOH . D 4 HOH A 78 978 54 HOH HOH . D 4 HOH A 79 979 174 HOH HOH . D 4 HOH A 80 980 119 HOH HOH . D 4 HOH A 81 981 8 HOH HOH . D 4 HOH A 82 982 13 HOH HOH . D 4 HOH A 83 983 9 HOH HOH . D 4 HOH A 84 984 5 HOH HOH . D 4 HOH A 85 985 33 HOH HOH . D 4 HOH A 86 986 137 HOH HOH . D 4 HOH A 87 987 16 HOH HOH . D 4 HOH A 88 988 32 HOH HOH . D 4 HOH A 89 989 127 HOH HOH . D 4 HOH A 90 990 31 HOH HOH . D 4 HOH A 91 991 114 HOH HOH . D 4 HOH A 92 992 112 HOH HOH . D 4 HOH A 93 993 1 HOH HOH . D 4 HOH A 94 994 122 HOH HOH . D 4 HOH A 95 995 59 HOH HOH . D 4 HOH A 96 996 189 HOH HOH . D 4 HOH A 97 997 26 HOH HOH . D 4 HOH A 98 998 182 HOH HOH . D 4 HOH A 99 999 179 HOH HOH . D 4 HOH A 100 1000 212 HOH HOH . D 4 HOH A 101 1001 58 HOH HOH . D 4 HOH A 102 1002 205 HOH HOH . D 4 HOH A 103 1003 188 HOH HOH . D 4 HOH A 104 1004 157 HOH HOH . D 4 HOH A 105 1005 30 HOH HOH . D 4 HOH A 106 1006 78 HOH HOH . D 4 HOH A 107 1007 146 HOH HOH . D 4 HOH A 108 1008 15 HOH HOH . D 4 HOH A 109 1009 204 HOH HOH . D 4 HOH A 110 1010 89 HOH HOH . D 4 HOH A 111 1011 44 HOH HOH . D 4 HOH A 112 1012 95 HOH HOH . D 4 HOH A 113 1013 12 HOH HOH . D 4 HOH A 114 1014 2 HOH HOH . D 4 HOH A 115 1015 83 HOH HOH . D 4 HOH A 116 1016 100 HOH HOH . D 4 HOH A 117 1017 124 HOH HOH . D 4 HOH A 118 1018 17 HOH HOH . D 4 HOH A 119 1019 210 HOH HOH . D 4 HOH A 120 1020 152 HOH HOH . D 4 HOH A 121 1021 192 HOH HOH . D 4 HOH A 122 1022 187 HOH HOH . D 4 HOH A 123 1023 46 HOH HOH . D 4 HOH A 124 1024 69 HOH HOH . D 4 HOH A 125 1025 207 HOH HOH . D 4 HOH A 126 1026 163 HOH HOH . D 4 HOH A 127 1027 98 HOH HOH . D 4 HOH A 128 1028 91 HOH HOH . D 4 HOH A 129 1029 134 HOH HOH . D 4 HOH A 130 1030 25 HOH HOH . D 4 HOH A 131 1031 23 HOH HOH . D 4 HOH A 132 1032 131 HOH HOH . D 4 HOH A 133 1033 27 HOH HOH . D 4 HOH A 134 1034 139 HOH HOH . D 4 HOH A 135 1035 160 HOH HOH . D 4 HOH A 136 1036 42 HOH HOH . D 4 HOH A 137 1037 55 HOH HOH . D 4 HOH A 138 1038 41 HOH HOH . D 4 HOH A 139 1039 129 HOH HOH . D 4 HOH A 140 1040 186 HOH HOH . D 4 HOH A 141 1041 211 HOH HOH . D 4 HOH A 142 1042 14 HOH HOH . D 4 HOH A 143 1043 120 HOH HOH . D 4 HOH A 144 1044 79 HOH HOH . D 4 HOH A 145 1045 158 HOH HOH . D 4 HOH A 146 1046 76 HOH HOH . D 4 HOH A 147 1047 86 HOH HOH . D 4 HOH A 148 1048 184 HOH HOH . D 4 HOH A 149 1049 136 HOH HOH . D 4 HOH A 150 1050 113 HOH HOH . D 4 HOH A 151 1051 116 HOH HOH . D 4 HOH A 152 1052 53 HOH HOH . D 4 HOH A 153 1053 22 HOH HOH . D 4 HOH A 154 1054 92 HOH HOH . D 4 HOH A 155 1055 56 HOH HOH . D 4 HOH A 156 1056 75 HOH HOH . D 4 HOH A 157 1057 60 HOH HOH . D 4 HOH A 158 1058 34 HOH HOH . D 4 HOH A 159 1059 181 HOH HOH . D 4 HOH A 160 1060 191 HOH HOH . D 4 HOH A 161 1061 149 HOH HOH . D 4 HOH A 162 1062 102 HOH HOH . D 4 HOH A 163 1063 11 HOH HOH . D 4 HOH A 164 1064 128 HOH HOH . D 4 HOH A 165 1065 81 HOH HOH . D 4 HOH A 166 1066 7 HOH HOH . D 4 HOH A 167 1067 48 HOH HOH . D 4 HOH A 168 1068 151 HOH HOH . D 4 HOH A 169 1069 200 HOH HOH . D 4 HOH A 170 1070 214 HOH HOH . D 4 HOH A 171 1071 203 HOH HOH . D 4 HOH A 172 1072 180 HOH HOH . D 4 HOH A 173 1073 70 HOH HOH . D 4 HOH A 174 1074 176 HOH HOH . D 4 HOH A 175 1075 159 HOH HOH . D 4 HOH A 176 1076 20 HOH HOH . D 4 HOH A 177 1077 173 HOH HOH . D 4 HOH A 178 1078 97 HOH HOH . D 4 HOH A 179 1079 93 HOH HOH . D 4 HOH A 180 1080 106 HOH HOH . D 4 HOH A 181 1081 178 HOH HOH . D 4 HOH A 182 1082 198 HOH HOH . D 4 HOH A 183 1083 10 HOH HOH . D 4 HOH A 184 1084 35 HOH HOH . D 4 HOH A 185 1085 82 HOH HOH . D 4 HOH A 186 1086 40 HOH HOH . D 4 HOH A 187 1087 144 HOH HOH . D 4 HOH A 188 1088 202 HOH HOH . D 4 HOH A 189 1089 108 HOH HOH . D 4 HOH A 190 1090 167 HOH HOH . D 4 HOH A 191 1091 110 HOH HOH . D 4 HOH A 192 1092 161 HOH HOH . D 4 HOH A 193 1093 195 HOH HOH . D 4 HOH A 194 1094 84 HOH HOH . D 4 HOH A 195 1095 101 HOH HOH . D 4 HOH A 196 1096 103 HOH HOH . D 4 HOH A 197 1097 199 HOH HOH . D 4 HOH A 198 1098 156 HOH HOH . D 4 HOH A 199 1099 165 HOH HOH . D 4 HOH A 200 1100 66 HOH HOH . D 4 HOH A 201 1101 185 HOH HOH . D 4 HOH A 202 1102 145 HOH HOH . D 4 HOH A 203 1103 147 HOH HOH . D 4 HOH A 204 1104 166 HOH HOH . D 4 HOH A 205 1105 90 HOH HOH . D 4 HOH A 206 1106 80 HOH HOH . D 4 HOH A 207 1107 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 Q98 . . . B 2 56.069 51.524 30.17 1 24.16 ? C4 Q98 801 A 1 HETATM 2 C C5 Q98 . . . B 2 54.79 51.396 29.62 1 23.61 ? C5 Q98 801 A 1 HETATM 3 C C6 Q98 . . . B 2 54.57 50.497 28.613 1 22.77 ? C6 Q98 801 A 1 HETATM 4 N N1 Q98 . . . B 2 55.624 49.702 28.233 1 22.76 ? N1 Q98 801 A 1 HETATM 5 C C7 Q98 . . . B 2 56.85 49.822 28.864 1 23 ? C7 Q98 801 A 1 HETATM 6 C C8 Q98 . . . B 2 57.6 48.748 28.385 1 22.53 ? C8 Q98 801 A 1 HETATM 7 N N2 Q98 . . . B 2 55.552 48.667 27.371 1 21.82 ? N2 Q98 801 A 1 HETATM 8 C C9 Q98 . . . B 2 56.749 48.104 27.48 1 22.34 ? C9 Q98 801 A 1 HETATM 9 C C10 Q98 . . . B 2 58.94 48.283 28.833 1 23.17 ? C10 Q98 801 A 1 HETATM 10 C C11 Q98 . . . B 2 59.484 47.096 28.336 1 22.41 ? C11 Q98 801 A 1 HETATM 11 C C12 Q98 . . . B 2 60.733 46.67 28.755 1 22.78 ? C12 Q98 801 A 1 HETATM 12 N N3 Q98 . . . B 2 61.084 50.422 31.779 1 24.99 ? N3 Q98 801 A 1 HETATM 13 C C13 Q98 . . . B 2 61.455 47.419 29.667 1 22.51 ? C13 Q98 801 A 1 HETATM 14 C C14 Q98 . . . B 2 60.918 48.585 30.205 1 23.13 ? C14 Q98 801 A 1 HETATM 15 C C15 Q98 . . . B 2 59.665 49.02 29.771 1 23.22 ? C15 Q98 801 A 1 HETATM 16 N N4 Q98 . . . B 2 57.098 50.745 29.809 1 23.97 ? N4 Q98 801 A 1 HETATM 17 O O1 Q98 . . . B 2 62.82 48.998 31.584 1 23.02 ? O1 Q98 801 A 1 HETATM 18 C C16 Q98 . . . B 2 61.675 49.334 31.268 1 24.34 ? C16 Q98 801 A 1 HETATM 19 C C Q98 . . . B 2 61.472 51.078 33.017 1 26.58 ? C Q98 801 A 1 HETATM 20 N N Q98 . . . B 2 56.293 52.478 31.123 1 24.89 ? N Q98 801 A 1 HETATM 21 C C3 Q98 . . . B 2 57.539 52.882 31.756 1 24.73 ? C3 Q98 801 A 1 HETATM 22 C C2 Q98 . . . B 2 58.157 51.88 32.673 1 24.93 ? C2 Q98 801 A 1 HETATM 23 O O Q98 . . . B 2 59.467 52.371 32.936 1 26.21 ? O Q98 801 A 1 HETATM 24 C C1 Q98 . . . B 2 60.268 51.553 33.782 1 26.44 ? C1 Q98 801 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #