data_6Z5F
#
_model_server_result.job_id            hkUUcKeqn3Jr3pMNyDZgJg 
_model_server_result.datetime_utc      '2024-11-28 21:17:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":803}' 
#
_entry.id    6Z5F 
#
_exptl.entry_id    6Z5F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Z5F 
_cell.length_a            65.155 
_cell.length_b            125.977 
_cell.length_c            223.527 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,L 1 1 
B,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6Z5F 
_atom_sites.fract_transf_matrix[1][1]    0.015348 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007938 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZOZ AAA 1 801 801 ZOZ ZOZ . 
D 3 NAD AAA 1 802 1001 NAD NAD . 
E 4 GOL AAA 1 803 1101 GOL GOL . 
F 2 ZOZ AAA 1 804 1201 ZOZ ZOZ . 
G 5 SO4 AAA 1 805 1 SO4 SO4 . 
H 4 GOL AAA 1 806 1 GOL GOL . 
I 3 NAD BBB 1 901 901 NAD NAD . 
J 2 ZOZ BBB 1 902 1001 ZOZ ZOZ . 
K 5 SO4 BBB 1 903 2 SO4 SO4 . 
L 6 HOH AAA 1 901 3 HOH HOH . 
L 6 HOH AAA 2 902 11 HOH HOH . 
L 6 HOH AAA 3 903 119 HOH HOH . 
L 6 HOH AAA 4 904 58 HOH HOH . 
L 6 HOH AAA 5 905 140 HOH HOH . 
L 6 HOH AAA 6 906 43 HOH HOH . 
L 6 HOH AAA 7 907 4 HOH HOH . 
L 6 HOH AAA 8 908 16 HOH HOH . 
L 6 HOH AAA 9 909 2 HOH HOH . 
L 6 HOH AAA 10 910 35 HOH HOH . 
L 6 HOH AAA 11 911 19 HOH HOH . 
L 6 HOH AAA 12 912 131 HOH HOH . 
L 6 HOH AAA 13 913 170 HOH HOH . 
L 6 HOH AAA 14 914 26 HOH HOH . 
L 6 HOH AAA 15 915 27 HOH HOH . 
L 6 HOH AAA 16 916 38 HOH HOH . 
L 6 HOH AAA 17 917 67 HOH HOH . 
L 6 HOH AAA 18 918 120 HOH HOH . 
L 6 HOH AAA 19 919 30 HOH HOH . 
L 6 HOH AAA 20 920 125 HOH HOH . 
L 6 HOH AAA 21 921 76 HOH HOH . 
L 6 HOH AAA 22 922 148 HOH HOH . 
L 6 HOH AAA 23 923 46 HOH HOH . 
L 6 HOH AAA 24 924 124 HOH HOH . 
L 6 HOH AAA 25 925 97 HOH HOH . 
L 6 HOH AAA 26 926 50 HOH HOH . 
L 6 HOH AAA 27 927 167 HOH HOH . 
L 6 HOH AAA 28 928 13 HOH HOH . 
L 6 HOH AAA 29 929 10 HOH HOH . 
L 6 HOH AAA 30 930 55 HOH HOH . 
L 6 HOH AAA 31 931 158 HOH HOH . 
L 6 HOH AAA 32 932 32 HOH HOH . 
L 6 HOH AAA 33 933 68 HOH HOH . 
L 6 HOH AAA 34 934 186 HOH HOH . 
L 6 HOH AAA 35 935 1 HOH HOH . 
L 6 HOH AAA 36 936 6 HOH HOH . 
L 6 HOH AAA 37 937 133 HOH HOH . 
L 6 HOH AAA 38 938 145 HOH HOH . 
L 6 HOH AAA 39 939 60 HOH HOH . 
L 6 HOH AAA 40 940 15 HOH HOH . 
L 6 HOH AAA 41 941 36 HOH HOH . 
L 6 HOH AAA 42 942 39 HOH HOH . 
L 6 HOH AAA 43 943 45 HOH HOH . 
L 6 HOH AAA 44 944 79 HOH HOH . 
L 6 HOH AAA 45 945 51 HOH HOH . 
L 6 HOH AAA 46 946 24 HOH HOH . 
L 6 HOH AAA 47 947 8 HOH HOH . 
L 6 HOH AAA 48 948 12 HOH HOH . 
L 6 HOH AAA 49 949 47 HOH HOH . 
L 6 HOH AAA 50 950 31 HOH HOH . 
L 6 HOH AAA 51 951 64 HOH HOH . 
L 6 HOH AAA 52 952 22 HOH HOH . 
L 6 HOH AAA 53 953 147 HOH HOH . 
L 6 HOH AAA 54 954 127 HOH HOH . 
L 6 HOH AAA 55 955 40 HOH HOH . 
L 6 HOH AAA 56 956 78 HOH HOH . 
L 6 HOH AAA 57 957 155 HOH HOH . 
L 6 HOH AAA 58 958 23 HOH HOH . 
L 6 HOH AAA 59 959 69 HOH HOH . 
L 6 HOH AAA 60 960 42 HOH HOH . 
L 6 HOH AAA 61 961 54 HOH HOH . 
L 6 HOH AAA 62 962 95 HOH HOH . 
L 6 HOH AAA 63 963 129 HOH HOH . 
L 6 HOH AAA 64 964 137 HOH HOH . 
L 6 HOH AAA 65 965 85 HOH HOH . 
L 6 HOH AAA 66 966 136 HOH HOH . 
L 6 HOH AAA 67 967 9 HOH HOH . 
L 6 HOH AAA 68 968 164 HOH HOH . 
L 6 HOH AAA 69 969 171 HOH HOH . 
L 6 HOH AAA 70 970 153 HOH HOH . 
L 6 HOH AAA 71 971 160 HOH HOH . 
L 6 HOH AAA 72 972 87 HOH HOH . 
L 6 HOH AAA 73 973 173 HOH HOH . 
L 6 HOH AAA 74 974 190 HOH HOH . 
L 6 HOH AAA 75 975 101 HOH HOH . 
L 6 HOH AAA 76 976 165 HOH HOH . 
L 6 HOH AAA 77 977 56 HOH HOH . 
L 6 HOH AAA 78 978 34 HOH HOH . 
L 6 HOH AAA 79 979 146 HOH HOH . 
L 6 HOH AAA 80 980 154 HOH HOH . 
L 6 HOH AAA 81 981 156 HOH HOH . 
L 6 HOH AAA 82 982 113 HOH HOH . 
L 6 HOH AAA 83 983 94 HOH HOH . 
L 6 HOH AAA 84 984 92 HOH HOH . 
L 6 HOH AAA 85 985 134 HOH HOH . 
L 6 HOH AAA 86 986 73 HOH HOH . 
L 6 HOH AAA 87 987 21 HOH HOH . 
L 6 HOH AAA 88 988 91 HOH HOH . 
L 6 HOH AAA 89 989 70 HOH HOH . 
L 6 HOH AAA 90 990 110 HOH HOH . 
L 6 HOH AAA 91 991 59 HOH HOH . 
L 6 HOH AAA 92 992 169 HOH HOH . 
L 6 HOH AAA 93 993 142 HOH HOH . 
L 6 HOH AAA 94 994 174 HOH HOH . 
L 6 HOH AAA 95 995 99 HOH HOH . 
L 6 HOH AAA 96 996 52 HOH HOH . 
L 6 HOH AAA 97 997 62 HOH HOH . 
L 6 HOH AAA 98 998 135 HOH HOH . 
L 6 HOH AAA 99 999 72 HOH HOH . 
L 6 HOH AAA 100 1000 112 HOH HOH . 
L 6 HOH AAA 101 1001 130 HOH HOH . 
L 6 HOH AAA 102 1002 166 HOH HOH . 
L 6 HOH AAA 103 1003 162 HOH HOH . 
L 6 HOH AAA 104 1004 18 HOH HOH . 
L 6 HOH AAA 105 1005 181 HOH HOH . 
L 6 HOH AAA 106 1006 141 HOH HOH . 
L 6 HOH AAA 107 1007 93 HOH HOH . 
L 6 HOH AAA 108 1008 177 HOH HOH . 
L 6 HOH AAA 109 1009 182 HOH HOH . 
L 6 HOH AAA 110 1010 121 HOH HOH . 
L 6 HOH AAA 111 1011 104 HOH HOH . 
L 6 HOH AAA 112 1012 138 HOH HOH . 
L 6 HOH AAA 113 1013 161 HOH HOH . 
L 6 HOH AAA 114 1014 83 HOH HOH . 
L 6 HOH AAA 115 1015 105 HOH HOH . 
L 6 HOH AAA 116 1016 111 HOH HOH . 
L 6 HOH AAA 117 1017 189 HOH HOH . 
L 6 HOH AAA 118 1018 176 HOH HOH . 
L 6 HOH AAA 119 1019 157 HOH HOH . 
L 6 HOH AAA 120 1020 143 HOH HOH . 
L 6 HOH AAA 121 1021 172 HOH HOH . 
L 6 HOH AAA 122 1022 115 HOH HOH . 
L 6 HOH AAA 123 1023 188 HOH HOH . 
M 6 HOH BBB 1 1001 102 HOH HOH . 
M 6 HOH BBB 2 1002 41 HOH HOH . 
M 6 HOH BBB 3 1003 191 HOH HOH . 
M 6 HOH BBB 4 1004 82 HOH HOH . 
M 6 HOH BBB 5 1005 126 HOH HOH . 
M 6 HOH BBB 6 1006 106 HOH HOH . 
M 6 HOH BBB 7 1007 90 HOH HOH . 
M 6 HOH BBB 8 1008 65 HOH HOH . 
M 6 HOH BBB 9 1009 33 HOH HOH . 
M 6 HOH BBB 10 1010 17 HOH HOH . 
M 6 HOH BBB 11 1011 163 HOH HOH . 
M 6 HOH BBB 12 1012 5 HOH HOH . 
M 6 HOH BBB 13 1013 28 HOH HOH . 
M 6 HOH BBB 14 1014 98 HOH HOH . 
M 6 HOH BBB 15 1015 25 HOH HOH . 
M 6 HOH BBB 16 1016 114 HOH HOH . 
M 6 HOH BBB 17 1017 20 HOH HOH . 
M 6 HOH BBB 18 1018 151 HOH HOH . 
M 6 HOH BBB 19 1019 183 HOH HOH . 
M 6 HOH BBB 20 1020 139 HOH HOH . 
M 6 HOH BBB 21 1021 149 HOH HOH . 
M 6 HOH BBB 22 1022 150 HOH HOH . 
M 6 HOH BBB 23 1023 175 HOH HOH . 
M 6 HOH BBB 24 1024 192 HOH HOH . 
M 6 HOH BBB 25 1025 118 HOH HOH . 
M 6 HOH BBB 26 1026 100 HOH HOH . 
M 6 HOH BBB 27 1027 107 HOH HOH . 
M 6 HOH BBB 28 1028 180 HOH HOH . 
M 6 HOH BBB 29 1029 184 HOH HOH . 
M 6 HOH BBB 30 1030 179 HOH HOH . 
M 6 HOH BBB 31 1031 187 HOH HOH . 
M 6 HOH BBB 32 1032 144 HOH HOH . 
M 6 HOH BBB 33 1033 61 HOH HOH . 
M 6 HOH BBB 34 1034 178 HOH HOH . 
M 6 HOH BBB 35 1035 152 HOH HOH . 
M 6 HOH BBB 36 1036 109 HOH HOH . 
M 6 HOH BBB 37 1037 185 HOH HOH . 
M 6 HOH BBB 38 1038 89 HOH HOH . 
M 6 HOH BBB 39 1039 168 HOH HOH . 
M 6 HOH BBB 40 1040 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -90.604 29.983 -104.694 1 73.16 ? C1 GOL 803 AAA 1 
HETATM 2 O O1 GOL . . . E 4 -91.803 29.388 -105.188 1 59.33 ? O1 GOL 803 AAA 1 
HETATM 3 C C2 GOL . . . E 4 -89.403 29.08 -104.892 1 70.22 ? C2 GOL 803 AAA 1 
HETATM 4 O O2 GOL . . . E 4 -88.51 29.628 -105.862 1 61.81 ? O2 GOL 803 AAA 1 
HETATM 5 C C3 GOL . . . E 4 -88.678 28.722 -103.609 1 72.14 ? C3 GOL 803 AAA 1 
HETATM 6 O O3 GOL . . . E 4 -88.675 27.313 -103.379 1 66.21 ? O3 GOL 803 AAA 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           6 
#