data_6Z5M # _model_server_result.job_id w1HiofqFe5j1u6gYafgyTg _model_server_result.datetime_utc '2024-11-18 05:50:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6Z5M # _exptl.entry_id 6Z5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z5M _cell.length_a 103.611 _cell.length_b 103.611 _cell.length_c 103.611 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 305 n n C1 C2 GOL sing 306 n n C1 H11 GOL sing 307 n n C1 H12 GOL sing 308 n n O1 HO1 GOL sing 309 n n C2 O2 GOL sing 310 n n C2 C3 GOL sing 311 n n C2 H2 GOL sing 312 n n O2 HO2 GOL sing 313 n n C3 O3 GOL sing 314 n n C3 H31 GOL sing 315 n n C3 H32 GOL sing 316 n n O3 HO3 GOL sing 317 n n # _atom_sites.entry_id 6Z5M _atom_sites.fract_transf_matrix[1][1] 0.009651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EVB A 1 201 201 EVB EVB . C 2 EVB A 1 202 301 EVB EVB . D 3 GOL A 1 203 401 GOL GOL . E 4 BDF A 1 204 1 BDF BDF . F 4 BDF A 1 205 2 BDF BDF . G 5 HOH A 1 301 202 HOH HOH . G 5 HOH A 2 302 343 HOH HOH . G 5 HOH A 3 303 429 HOH HOH . G 5 HOH A 4 304 253 HOH HOH . G 5 HOH A 5 305 58 HOH HOH . G 5 HOH A 6 306 116 HOH HOH . G 5 HOH A 7 307 199 HOH HOH . G 5 HOH A 8 308 124 HOH HOH . G 5 HOH A 9 309 450 HOH HOH . G 5 HOH A 10 310 63 HOH HOH . G 5 HOH A 11 311 246 HOH HOH . G 5 HOH A 12 312 112 HOH HOH . G 5 HOH A 13 313 99 HOH HOH . G 5 HOH A 14 314 68 HOH HOH . G 5 HOH A 15 315 27 HOH HOH . G 5 HOH A 16 316 176 HOH HOH . G 5 HOH A 17 317 83 HOH HOH . G 5 HOH A 18 318 436 HOH HOH . G 5 HOH A 19 319 60 HOH HOH . G 5 HOH A 20 320 5 HOH HOH . G 5 HOH A 21 321 142 HOH HOH . G 5 HOH A 22 322 2 HOH HOH . G 5 HOH A 23 323 382 HOH HOH . G 5 HOH A 24 324 57 HOH HOH . G 5 HOH A 25 325 101 HOH HOH . G 5 HOH A 26 326 53 HOH HOH . G 5 HOH A 27 327 106 HOH HOH . G 5 HOH A 28 328 110 HOH HOH . G 5 HOH A 29 329 213 HOH HOH . G 5 HOH A 30 330 23 HOH HOH . G 5 HOH A 31 331 7 HOH HOH . G 5 HOH A 32 332 24 HOH HOH . G 5 HOH A 33 333 37 HOH HOH . G 5 HOH A 34 334 21 HOH HOH . G 5 HOH A 35 335 311 HOH HOH . G 5 HOH A 36 336 121 HOH HOH . G 5 HOH A 37 337 69 HOH HOH . G 5 HOH A 38 338 326 HOH HOH . G 5 HOH A 39 339 1 HOH HOH . G 5 HOH A 40 340 127 HOH HOH . G 5 HOH A 41 341 175 HOH HOH . G 5 HOH A 42 342 78 HOH HOH . G 5 HOH A 43 343 3 HOH HOH . G 5 HOH A 44 344 46 HOH HOH . G 5 HOH A 45 345 28 HOH HOH . G 5 HOH A 46 346 35 HOH HOH . G 5 HOH A 47 347 76 HOH HOH . G 5 HOH A 48 348 91 HOH HOH . G 5 HOH A 49 349 22 HOH HOH . G 5 HOH A 50 350 66 HOH HOH . G 5 HOH A 51 351 8 HOH HOH . G 5 HOH A 52 352 13 HOH HOH . G 5 HOH A 53 353 328 HOH HOH . G 5 HOH A 54 354 136 HOH HOH . G 5 HOH A 55 355 64 HOH HOH . G 5 HOH A 56 356 17 HOH HOH . G 5 HOH A 57 357 6 HOH HOH . G 5 HOH A 58 358 408 HOH HOH . G 5 HOH A 59 359 18 HOH HOH . G 5 HOH A 60 360 67 HOH HOH . G 5 HOH A 61 361 93 HOH HOH . G 5 HOH A 62 362 137 HOH HOH . G 5 HOH A 63 363 71 HOH HOH . G 5 HOH A 64 364 14 HOH HOH . G 5 HOH A 65 365 330 HOH HOH . G 5 HOH A 66 366 48 HOH HOH . G 5 HOH A 67 367 15 HOH HOH . G 5 HOH A 68 368 12 HOH HOH . G 5 HOH A 69 369 43 HOH HOH . G 5 HOH A 70 370 126 HOH HOH . G 5 HOH A 71 371 301 HOH HOH . G 5 HOH A 72 372 94 HOH HOH . G 5 HOH A 73 373 74 HOH HOH . G 5 HOH A 74 374 107 HOH HOH . G 5 HOH A 75 375 62 HOH HOH . G 5 HOH A 76 376 291 HOH HOH . G 5 HOH A 77 377 20 HOH HOH . G 5 HOH A 78 378 125 HOH HOH . G 5 HOH A 79 379 146 HOH HOH . G 5 HOH A 80 380 332 HOH HOH . G 5 HOH A 81 381 102 HOH HOH . G 5 HOH A 82 382 81 HOH HOH . G 5 HOH A 83 383 70 HOH HOH . G 5 HOH A 84 384 26 HOH HOH . G 5 HOH A 85 385 4 HOH HOH . G 5 HOH A 86 386 16 HOH HOH . G 5 HOH A 87 387 108 HOH HOH . G 5 HOH A 88 388 369 HOH HOH . G 5 HOH A 89 389 65 HOH HOH . G 5 HOH A 90 390 31 HOH HOH . G 5 HOH A 91 391 49 HOH HOH . G 5 HOH A 92 392 140 HOH HOH . G 5 HOH A 93 393 130 HOH HOH . G 5 HOH A 94 394 254 HOH HOH . G 5 HOH A 95 395 86 HOH HOH . G 5 HOH A 96 396 315 HOH HOH . G 5 HOH A 97 397 152 HOH HOH . G 5 HOH A 98 398 47 HOH HOH . G 5 HOH A 99 399 92 HOH HOH . G 5 HOH A 100 400 197 HOH HOH . G 5 HOH A 101 401 113 HOH HOH . G 5 HOH A 102 402 139 HOH HOH . G 5 HOH A 103 403 300 HOH HOH . G 5 HOH A 104 404 80 HOH HOH . G 5 HOH A 105 405 327 HOH HOH . G 5 HOH A 106 406 10 HOH HOH . G 5 HOH A 107 407 469 HOH HOH . G 5 HOH A 108 408 30 HOH HOH . G 5 HOH A 109 409 160 HOH HOH . G 5 HOH A 110 410 319 HOH HOH . G 5 HOH A 111 411 279 HOH HOH . G 5 HOH A 112 412 11 HOH HOH . G 5 HOH A 113 413 19 HOH HOH . G 5 HOH A 114 414 42 HOH HOH . G 5 HOH A 115 415 100 HOH HOH . G 5 HOH A 116 416 51 HOH HOH . G 5 HOH A 117 417 25 HOH HOH . G 5 HOH A 118 418 36 HOH HOH . G 5 HOH A 119 419 34 HOH HOH . G 5 HOH A 120 420 9 HOH HOH . G 5 HOH A 121 421 314 HOH HOH . G 5 HOH A 122 422 252 HOH HOH . G 5 HOH A 123 423 174 HOH HOH . G 5 HOH A 124 424 131 HOH HOH . G 5 HOH A 125 425 387 HOH HOH . G 5 HOH A 126 426 82 HOH HOH . G 5 HOH A 127 427 32 HOH HOH . G 5 HOH A 128 428 55 HOH HOH . G 5 HOH A 129 429 75 HOH HOH . G 5 HOH A 130 430 89 HOH HOH . G 5 HOH A 131 431 54 HOH HOH . G 5 HOH A 132 432 123 HOH HOH . G 5 HOH A 133 433 178 HOH HOH . G 5 HOH A 134 434 141 HOH HOH . G 5 HOH A 135 435 40 HOH HOH . G 5 HOH A 136 436 29 HOH HOH . G 5 HOH A 137 437 380 HOH HOH . G 5 HOH A 138 438 72 HOH HOH . G 5 HOH A 139 439 96 HOH HOH . G 5 HOH A 140 440 305 HOH HOH . G 5 HOH A 141 441 275 HOH HOH . G 5 HOH A 142 442 230 HOH HOH . G 5 HOH A 143 443 463 HOH HOH . G 5 HOH A 144 444 97 HOH HOH . G 5 HOH A 145 445 90 HOH HOH . G 5 HOH A 146 446 241 HOH HOH . G 5 HOH A 147 447 103 HOH HOH . G 5 HOH A 148 448 39 HOH HOH . G 5 HOH A 149 449 128 HOH HOH . G 5 HOH A 150 450 308 HOH HOH . G 5 HOH A 151 451 159 HOH HOH . G 5 HOH A 152 452 459 HOH HOH . G 5 HOH A 153 453 491 HOH HOH . G 5 HOH A 154 454 312 HOH HOH . G 5 HOH A 155 455 423 HOH HOH . G 5 HOH A 156 456 302 HOH HOH . G 5 HOH A 157 457 377 HOH HOH . G 5 HOH A 158 458 290 HOH HOH . G 5 HOH A 159 459 173 HOH HOH . G 5 HOH A 160 460 309 HOH HOH . G 5 HOH A 161 461 348 HOH HOH . G 5 HOH A 162 462 401 HOH HOH . G 5 HOH A 163 463 483 HOH HOH . G 5 HOH A 164 464 210 HOH HOH . G 5 HOH A 165 465 98 HOH HOH . G 5 HOH A 166 466 281 HOH HOH . G 5 HOH A 167 467 111 HOH HOH . G 5 HOH A 168 468 85 HOH HOH . G 5 HOH A 169 469 87 HOH HOH . G 5 HOH A 170 470 443 HOH HOH . G 5 HOH A 171 471 208 HOH HOH . G 5 HOH A 172 472 203 HOH HOH . G 5 HOH A 173 473 320 HOH HOH . G 5 HOH A 174 474 329 HOH HOH . G 5 HOH A 175 475 211 HOH HOH . G 5 HOH A 176 476 293 HOH HOH . G 5 HOH A 177 477 41 HOH HOH . G 5 HOH A 178 478 492 HOH HOH . G 5 HOH A 179 479 350 HOH HOH . G 5 HOH A 180 480 59 HOH HOH . G 5 HOH A 181 481 395 HOH HOH . G 5 HOH A 182 482 135 HOH HOH . G 5 HOH A 183 483 163 HOH HOH . G 5 HOH A 184 484 335 HOH HOH . G 5 HOH A 185 485 138 HOH HOH . G 5 HOH A 186 486 109 HOH HOH . G 5 HOH A 187 487 115 HOH HOH . G 5 HOH A 188 488 84 HOH HOH . G 5 HOH A 189 489 297 HOH HOH . G 5 HOH A 190 490 119 HOH HOH . G 5 HOH A 191 491 33 HOH HOH . G 5 HOH A 192 492 473 HOH HOH . G 5 HOH A 193 493 38 HOH HOH . G 5 HOH A 194 494 381 HOH HOH . G 5 HOH A 195 495 493 HOH HOH . G 5 HOH A 196 496 346 HOH HOH . G 5 HOH A 197 497 143 HOH HOH . G 5 HOH A 198 498 79 HOH HOH . G 5 HOH A 199 499 104 HOH HOH . G 5 HOH A 200 500 289 HOH HOH . G 5 HOH A 201 501 237 HOH HOH . G 5 HOH A 202 502 188 HOH HOH . G 5 HOH A 203 503 148 HOH HOH . G 5 HOH A 204 504 198 HOH HOH . G 5 HOH A 205 505 419 HOH HOH . G 5 HOH A 206 506 170 HOH HOH . G 5 HOH A 207 507 494 HOH HOH . G 5 HOH A 208 508 422 HOH HOH . G 5 HOH A 209 509 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -20.181 -18.461 -9.338 1 36.32 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 -19.469 -18.667 -8.141 1 28.49 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 -19.891 -17.062 -9.868 1 48.37 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 -20.716 -16.13 -9.197 1 53.66 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 -20.191 -17.033 -11.362 1 38.43 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 -19.479 -15.97 -11.964 1 37.82 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #