data_6Z5X # _model_server_result.job_id wZsD91sbEGc_Yp79Q1R73Q _model_server_result.datetime_utc '2024-11-23 05:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":105}' # _entry.id 6Z5X # _exptl.entry_id 6Z5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z5X _cell.length_a 64.056 _cell.length_b 64.056 _cell.length_c 64.056 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 5 A THR 5 1_555 F NA NA . A NA 105 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc2 A OD1 ASN 47 A ASN 47 1_555 F NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 A O TYR 64 A TYR 64 1_555 F NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 A OG SER 66 A SER 66 1_555 F NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Z5X _atom_sites.fract_transf_matrix[1][1] 0.015611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EVB A 1 101 203 EVB EVB . C 3 SO4 A 1 102 1 SO4 SO4 . D 4 BDF A 1 103 1 BDF BDF . E 4 BDF A 1 104 2 BDF BDF . F 5 NA A 1 105 1 NA NA . G 6 HOH A 1 201 44 HOH HOH . G 6 HOH A 2 202 30 HOH HOH . G 6 HOH A 3 203 26 HOH HOH . G 6 HOH A 4 204 101 HOH HOH . G 6 HOH A 5 205 4 HOH HOH . G 6 HOH A 6 206 20 HOH HOH . G 6 HOH A 7 207 35 HOH HOH . G 6 HOH A 8 208 45 HOH HOH . G 6 HOH A 9 209 9 HOH HOH . G 6 HOH A 10 210 93 HOH HOH . G 6 HOH A 11 211 6 HOH HOH . G 6 HOH A 12 212 3 HOH HOH . G 6 HOH A 13 213 86 HOH HOH . G 6 HOH A 14 214 38 HOH HOH . G 6 HOH A 15 215 74 HOH HOH . G 6 HOH A 16 216 11 HOH HOH . G 6 HOH A 17 217 34 HOH HOH . G 6 HOH A 18 218 80 HOH HOH . G 6 HOH A 19 219 17 HOH HOH . G 6 HOH A 20 220 5 HOH HOH . G 6 HOH A 21 221 36 HOH HOH . G 6 HOH A 22 222 29 HOH HOH . G 6 HOH A 23 223 23 HOH HOH . G 6 HOH A 24 224 54 HOH HOH . G 6 HOH A 25 225 22 HOH HOH . G 6 HOH A 26 226 49 HOH HOH . G 6 HOH A 27 227 71 HOH HOH . G 6 HOH A 28 228 33 HOH HOH . G 6 HOH A 29 229 15 HOH HOH . G 6 HOH A 30 230 8 HOH HOH . G 6 HOH A 31 231 43 HOH HOH . G 6 HOH A 32 232 55 HOH HOH . G 6 HOH A 33 233 59 HOH HOH . G 6 HOH A 34 234 28 HOH HOH . G 6 HOH A 35 235 32 HOH HOH . G 6 HOH A 36 236 13 HOH HOH . G 6 HOH A 37 237 84 HOH HOH . G 6 HOH A 38 238 2 HOH HOH . G 6 HOH A 39 239 98 HOH HOH . G 6 HOH A 40 240 60 HOH HOH . G 6 HOH A 41 241 14 HOH HOH . G 6 HOH A 42 242 24 HOH HOH . G 6 HOH A 43 243 77 HOH HOH . G 6 HOH A 44 244 110 HOH HOH . G 6 HOH A 45 245 7 HOH HOH . G 6 HOH A 46 246 12 HOH HOH . G 6 HOH A 47 247 61 HOH HOH . G 6 HOH A 48 248 107 HOH HOH . G 6 HOH A 49 249 41 HOH HOH . G 6 HOH A 50 250 16 HOH HOH . G 6 HOH A 51 251 31 HOH HOH . G 6 HOH A 52 252 106 HOH HOH . G 6 HOH A 53 253 90 HOH HOH . G 6 HOH A 54 254 19 HOH HOH . G 6 HOH A 55 255 117 HOH HOH . G 6 HOH A 56 256 25 HOH HOH . G 6 HOH A 57 257 21 HOH HOH . G 6 HOH A 58 258 103 HOH HOH . G 6 HOH A 59 259 125 HOH HOH . G 6 HOH A 60 260 105 HOH HOH . G 6 HOH A 61 261 50 HOH HOH . G 6 HOH A 62 262 48 HOH HOH . G 6 HOH A 63 263 53 HOH HOH . G 6 HOH A 64 264 81 HOH HOH . G 6 HOH A 65 265 65 HOH HOH . G 6 HOH A 66 266 27 HOH HOH . G 6 HOH A 67 267 39 HOH HOH . G 6 HOH A 68 268 121 HOH HOH . G 6 HOH A 69 269 72 HOH HOH . G 6 HOH A 70 270 51 HOH HOH . G 6 HOH A 71 271 132 HOH HOH . G 6 HOH A 72 272 83 HOH HOH . G 6 HOH A 73 273 78 HOH HOH . G 6 HOH A 74 274 73 HOH HOH . G 6 HOH A 75 275 75 HOH HOH . G 6 HOH A 76 276 52 HOH HOH . G 6 HOH A 77 277 10 HOH HOH . G 6 HOH A 78 278 37 HOH HOH . G 6 HOH A 79 279 118 HOH HOH . G 6 HOH A 80 280 82 HOH HOH . G 6 HOH A 81 281 128 HOH HOH . G 6 HOH A 82 282 104 HOH HOH . G 6 HOH A 83 283 112 HOH HOH . G 6 HOH A 84 284 109 HOH HOH . G 6 HOH A 85 285 113 HOH HOH . G 6 HOH A 86 286 100 HOH HOH . G 6 HOH A 87 287 64 HOH HOH . G 6 HOH A 88 288 56 HOH HOH . G 6 HOH A 89 289 131 HOH HOH . G 6 HOH A 90 290 69 HOH HOH . G 6 HOH A 91 291 137 HOH HOH . G 6 HOH A 92 292 111 HOH HOH . G 6 HOH A 93 293 130 HOH HOH . G 6 HOH A 94 294 120 HOH HOH . G 6 HOH A 95 295 114 HOH HOH . G 6 HOH A 96 296 115 HOH HOH . G 6 HOH A 97 297 134 HOH HOH . G 6 HOH A 98 298 124 HOH HOH . G 6 HOH A 99 299 42 HOH HOH . G 6 HOH A 100 300 46 HOH HOH . G 6 HOH A 101 301 133 HOH HOH . G 6 HOH A 102 302 99 HOH HOH . G 6 HOH A 103 303 76 HOH HOH . G 6 HOH A 104 304 116 HOH HOH . G 6 HOH A 105 305 127 HOH HOH . G 6 HOH A 106 306 18 HOH HOH . G 6 HOH A 107 307 108 HOH HOH . G 6 HOH A 108 308 129 HOH HOH . G 6 HOH A 109 309 66 HOH HOH . G 6 HOH A 110 310 47 HOH HOH . G 6 HOH A 111 311 70 HOH HOH . G 6 HOH A 112 312 79 HOH HOH . G 6 HOH A 113 313 135 HOH HOH . G 6 HOH A 114 314 40 HOH HOH . G 6 HOH A 115 315 58 HOH HOH . G 6 HOH A 116 316 62 HOH HOH . G 6 HOH A 117 317 136 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 11.096 _atom_site.Cartn_y 0.278 _atom_site.Cartn_z 2.839 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.12 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #