data_6Z60 # _model_server_result.job_id pLaF4ozd41t8LCrIRESiAA _model_server_result.datetime_utc '2024-11-17 03:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 6Z60 # _exptl.entry_id 6Z60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-fructopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z60 _cell.length_a 63.872 _cell.length_b 63.872 _cell.length_c 63.872 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BDF _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-fructopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-fructose;D-fructose;fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BDF sing 70 n n C1 O1 BDF sing 71 n n C1 H11 BDF sing 72 n n C1 H12 BDF sing 73 n n C2 C3 BDF sing 74 n n C2 O2 BDF sing 75 n n C2 O6 BDF sing 76 n n C3 C4 BDF sing 77 n n C3 O3 BDF sing 78 n n C3 H3 BDF sing 79 n n C4 C5 BDF sing 80 n n C4 O4 BDF sing 81 n n C4 H4 BDF sing 82 n n C5 C6 BDF sing 83 n n C5 O5 BDF sing 84 n n C5 H5 BDF sing 85 n n C6 O6 BDF sing 86 n n C6 H61 BDF sing 87 n n C6 H62 BDF sing 88 n n O1 HO1 BDF sing 89 n n O2 HO2 BDF sing 90 n n O3 HO3 BDF sing 91 n n O4 HO4 BDF sing 92 n n O5 HO5 BDF sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BDF DFrupb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BDF b-D-fructopyranose 'COMMON NAME' GMML 1 BDF b-D-Frup 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BDF Fru 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6Z60 _atom_sites.fract_transf_matrix[1][1] 0.015656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EVB A 1 101 203 EVB EVB . C 3 SO4 A 1 102 1 SO4 SO4 . D 4 BDF A 1 103 204 BDF BDF . E 4 BDF A 1 104 205 BDF BDF . F 5 HOH A 1 201 178 HOH HOH . F 5 HOH A 2 202 6 HOH HOH . F 5 HOH A 3 203 46 HOH HOH . F 5 HOH A 4 204 8 HOH HOH . F 5 HOH A 5 205 15 HOH HOH . F 5 HOH A 6 206 176 HOH HOH . F 5 HOH A 7 207 26 HOH HOH . F 5 HOH A 8 208 17 HOH HOH . F 5 HOH A 9 209 19 HOH HOH . F 5 HOH A 10 210 32 HOH HOH . F 5 HOH A 11 211 12 HOH HOH . F 5 HOH A 12 212 83 HOH HOH . F 5 HOH A 13 213 177 HOH HOH . F 5 HOH A 14 214 10 HOH HOH . F 5 HOH A 15 215 14 HOH HOH . F 5 HOH A 16 216 268 HOH HOH . F 5 HOH A 17 217 278 HOH HOH . F 5 HOH A 18 218 73 HOH HOH . F 5 HOH A 19 219 40 HOH HOH . F 5 HOH A 20 220 168 HOH HOH . F 5 HOH A 21 221 3 HOH HOH . F 5 HOH A 22 222 187 HOH HOH . F 5 HOH A 23 223 22 HOH HOH . F 5 HOH A 24 224 103 HOH HOH . F 5 HOH A 25 225 33 HOH HOH . F 5 HOH A 26 226 23 HOH HOH . F 5 HOH A 27 227 13 HOH HOH . F 5 HOH A 28 228 27 HOH HOH . F 5 HOH A 29 229 29 HOH HOH . F 5 HOH A 30 230 9 HOH HOH . F 5 HOH A 31 231 20 HOH HOH . F 5 HOH A 32 232 42 HOH HOH . F 5 HOH A 33 233 88 HOH HOH . F 5 HOH A 34 234 54 HOH HOH . F 5 HOH A 35 235 102 HOH HOH . F 5 HOH A 36 236 97 HOH HOH . F 5 HOH A 37 237 35 HOH HOH . F 5 HOH A 38 238 56 HOH HOH . F 5 HOH A 39 239 2 HOH HOH . F 5 HOH A 40 240 28 HOH HOH . F 5 HOH A 41 241 36 HOH HOH . F 5 HOH A 42 242 7 HOH HOH . F 5 HOH A 43 243 283 HOH HOH . F 5 HOH A 44 244 30 HOH HOH . F 5 HOH A 45 245 18 HOH HOH . F 5 HOH A 46 246 227 HOH HOH . F 5 HOH A 47 247 59 HOH HOH . F 5 HOH A 48 248 188 HOH HOH . F 5 HOH A 49 249 16 HOH HOH . F 5 HOH A 50 250 92 HOH HOH . F 5 HOH A 51 251 52 HOH HOH . F 5 HOH A 52 252 34 HOH HOH . F 5 HOH A 53 253 11 HOH HOH . F 5 HOH A 54 254 86 HOH HOH . F 5 HOH A 55 255 162 HOH HOH . F 5 HOH A 56 256 146 HOH HOH . F 5 HOH A 57 257 41 HOH HOH . F 5 HOH A 58 258 75 HOH HOH . F 5 HOH A 59 259 230 HOH HOH . F 5 HOH A 60 260 63 HOH HOH . F 5 HOH A 61 261 25 HOH HOH . F 5 HOH A 62 262 288 HOH HOH . F 5 HOH A 63 263 261 HOH HOH . F 5 HOH A 64 264 43 HOH HOH . F 5 HOH A 65 265 125 HOH HOH . F 5 HOH A 66 266 31 HOH HOH . F 5 HOH A 67 267 269 HOH HOH . F 5 HOH A 68 268 45 HOH HOH . F 5 HOH A 69 269 72 HOH HOH . F 5 HOH A 70 270 234 HOH HOH . F 5 HOH A 71 271 21 HOH HOH . F 5 HOH A 72 272 306 HOH HOH . F 5 HOH A 73 273 245 HOH HOH . F 5 HOH A 74 274 99 HOH HOH . F 5 HOH A 75 275 244 HOH HOH . F 5 HOH A 76 276 62 HOH HOH . F 5 HOH A 77 277 79 HOH HOH . F 5 HOH A 78 278 78 HOH HOH . F 5 HOH A 79 279 53 HOH HOH . F 5 HOH A 80 280 50 HOH HOH . F 5 HOH A 81 281 101 HOH HOH . F 5 HOH A 82 282 241 HOH HOH . F 5 HOH A 83 283 233 HOH HOH . F 5 HOH A 84 284 300 HOH HOH . F 5 HOH A 85 285 89 HOH HOH . F 5 HOH A 86 286 66 HOH HOH . F 5 HOH A 87 287 242 HOH HOH . F 5 HOH A 88 288 1 HOH HOH . F 5 HOH A 89 289 305 HOH HOH . F 5 HOH A 90 290 228 HOH HOH . F 5 HOH A 91 291 24 HOH HOH . F 5 HOH A 92 292 259 HOH HOH . F 5 HOH A 93 293 106 HOH HOH . F 5 HOH A 94 294 186 HOH HOH . F 5 HOH A 95 295 49 HOH HOH . F 5 HOH A 96 296 51 HOH HOH . F 5 HOH A 97 297 243 HOH HOH . F 5 HOH A 98 298 275 HOH HOH . F 5 HOH A 99 299 150 HOH HOH . F 5 HOH A 100 300 68 HOH HOH . F 5 HOH A 101 301 69 HOH HOH . F 5 HOH A 102 302 271 HOH HOH . F 5 HOH A 103 303 61 HOH HOH . F 5 HOH A 104 304 274 HOH HOH . F 5 HOH A 105 305 100 HOH HOH . F 5 HOH A 106 306 38 HOH HOH . F 5 HOH A 107 307 60 HOH HOH . F 5 HOH A 108 308 302 HOH HOH . F 5 HOH A 109 309 255 HOH HOH . F 5 HOH A 110 310 210 HOH HOH . F 5 HOH A 111 311 39 HOH HOH . F 5 HOH A 112 312 301 HOH HOH . F 5 HOH A 113 313 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BDF . . . D 4 11.697 -14.092 -6.57 1 15.57 ? C1 BDF 103 A 1 HETATM 2 C C2 BDF . . . D 4 11.732 -12.888 -7.499 1 13.52 ? C2 BDF 103 A 1 HETATM 3 C C3 BDF . . . D 4 12.594 -11.755 -6.92 1 13.12 ? C3 BDF 103 A 1 HETATM 4 C C4 BDF . . . D 4 12.442 -10.489 -7.758 1 13.32 ? C4 BDF 103 A 1 HETATM 5 C C5 BDF . . . D 4 10.97 -10.12 -7.887 1 12.08 ? C5 BDF 103 A 1 HETATM 6 C C6 BDF . . . D 4 10.21 -11.295 -8.462 1 12.96 ? C6 BDF 103 A 1 HETATM 7 O O1 BDF . . . D 4 10.986 -15.182 -7.141 1 21.29 ? O1 BDF 103 A 1 HETATM 8 O O2 BDF . . . D 4 12.235 -13.227 -8.764 1 16.48 ? O2 BDF 103 A 1 HETATM 9 O O3 BDF . . . D 4 13.968 -12.137 -6.893 1 13.85 ? O3 BDF 103 A 1 HETATM 10 O O4 BDF . . . D 4 13.206 -9.428 -7.188 1 12.22 ? O4 BDF 103 A 1 HETATM 11 O O5 BDF . . . D 4 10.394 -9.817 -6.615 1 12.16 ? O5 BDF 103 A 1 HETATM 12 O O6 BDF . . . D 4 10.38 -12.453 -7.624 1 13.49 ? O6 BDF 103 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #