data_6Z61
#
_model_server_result.job_id            RN-lEUzOFSELtRVcMerGIw 
_model_server_result.datetime_utc      '2024-12-01 10:32:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6Z61 
#
_exptl.entry_id    6Z61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              613.583 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R},3~{R},4~{S},5~{R})-2-[6-azanyl-8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-(2-azanylethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Z61 
_cell.length_a            62.585 
_cell.length_b            75.423 
_cell.length_c            118.131 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
A,B,C,D 1 3 
A,B,C,D 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.585 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.585 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H31 N11 O8' 
_chem_comp.formula_weight    613.583 
_chem_comp.id                Q9H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R},3~{R},4~{S},5~{R})-2-[6-azanyl-8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-(2-azanylethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C Q9H sing 297 n n 
C C1 Q9H sing 298 n n 
C1 N1 Q9H sing 299 n n 
N1 C2 Q9H sing 300 n n 
N2 C2 Q9H doub 301 n y 
N2 C3 Q9H sing 302 n y 
C2 C6 Q9H sing 303 n y 
C3 N3 Q9H doub 304 n y 
C6 C4 Q9H doub 305 n y 
C6 N5 Q9H sing 306 n y 
N3 C4 Q9H sing 307 n y 
C4 N4 Q9H sing 308 n y 
N5 C5 Q9H doub 309 n y 
C24 O7 Q9H sing 310 n n 
C24 C23 Q9H sing 311 n n 
C24 C7 Q9H sing 312 n n 
C5 N4 Q9H sing 313 n y 
N4 C7 Q9H sing 314 n n 
O6 C23 Q9H sing 315 n n 
C23 C8 Q9H sing 316 n n 
C7 O Q9H sing 317 n n 
O C8 Q9H sing 318 n n 
C8 C9 Q9H sing 319 n n 
C9 O1 Q9H sing 320 n n 
N7 C15 Q9H sing 321 n n 
O1 C10 Q9H sing 322 n n 
C15 N8 Q9H doub 323 n y 
C15 C14 Q9H sing 324 n y 
N8 C16 Q9H sing 325 n y 
N6 C14 Q9H sing 326 n y 
N6 C13 Q9H doub 327 n y 
C14 C17 Q9H doub 328 n y 
O3 C20 Q9H sing 329 n n 
C10 C11 Q9H sing 330 n n 
C16 N9 Q9H doub 331 n y 
C13 C12 Q9H sing 332 n n 
C13 N10 Q9H sing 333 n y 
C11 C12 Q9H trip 334 n n 
C17 N9 Q9H sing 335 n y 
C17 N10 Q9H sing 336 n y 
O2 C18 Q9H sing 337 n n 
O2 C19 Q9H sing 338 n n 
N10 C18 Q9H sing 339 n n 
C20 C19 Q9H sing 340 n n 
C18 C22 Q9H sing 341 n n 
C19 C21 Q9H sing 342 n n 
C22 C21 Q9H sing 343 n n 
C22 O5 Q9H sing 344 n n 
C21 O4 Q9H sing 345 n n 
O3 H1 Q9H sing 346 n n 
C5 H2 Q9H sing 347 n n 
O4 H3 Q9H sing 348 n n 
N1 H4 Q9H sing 349 n n 
C7 H5 Q9H sing 350 n n 
C8 H6 Q9H sing 351 n n 
C9 H7 Q9H sing 352 n n 
C9 H8 Q9H sing 353 n n 
O5 H9 Q9H sing 354 n n 
C10 H10 Q9H sing 355 n n 
C10 H11 Q9H sing 356 n n 
O6 H12 Q9H sing 357 n n 
O7 H13 Q9H sing 358 n n 
N H14 Q9H sing 359 n n 
N H15 Q9H sing 360 n n 
C H17 Q9H sing 361 n n 
C H18 Q9H sing 362 n n 
C1 H19 Q9H sing 363 n n 
C1 H20 Q9H sing 364 n n 
C16 H21 Q9H sing 365 n n 
C18 H22 Q9H sing 366 n n 
C19 H23 Q9H sing 367 n n 
C20 H24 Q9H sing 368 n n 
C20 H25 Q9H sing 369 n n 
C21 H26 Q9H sing 370 n n 
C22 H27 Q9H sing 371 n n 
C23 H28 Q9H sing 372 n n 
C24 H29 Q9H sing 373 n n 
C3 H30 Q9H sing 374 n n 
N7 H31 Q9H sing 375 n n 
N7 H32 Q9H sing 376 n n 
#
_atom_sites.entry_id                     6Z61 
_atom_sites.fract_transf_matrix[1][1]    0.015978 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 265 CIT CIT . 
C 3 Q9H A 1 302 1 Q9H XXX . 
D 4 HOH A 1 401 15 HOH HOH . 
D 4 HOH A 2 402 3 HOH HOH . 
D 4 HOH A 3 403 10 HOH HOH . 
D 4 HOH A 4 404 9 HOH HOH . 
D 4 HOH A 5 405 8 HOH HOH . 
D 4 HOH A 6 406 17 HOH HOH . 
D 4 HOH A 7 407 2 HOH HOH . 
D 4 HOH A 8 408 5 HOH HOH . 
D 4 HOH A 9 409 7 HOH HOH . 
D 4 HOH A 10 410 16 HOH HOH . 
D 4 HOH A 11 411 4 HOH HOH . 
D 4 HOH A 12 412 11 HOH HOH . 
D 4 HOH A 13 413 6 HOH HOH . 
D 4 HOH A 14 414 1 HOH HOH . 
D 4 HOH A 15 415 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 Q9H . . . C 3 15.436 7.293 12.136 1 89.72 ? O3 Q9H 302 A 1 
HETATM 2 C C4 Q9H . . . C 3 14.904 6.884 7.027 1 77.35 ? C4 Q9H 302 A 1 
HETATM 3 C C5 Q9H . . . C 3 16.706 5.939 7.853 1 73.63 ? C5 Q9H 302 A 1 
HETATM 4 O O4 Q9H . . . C 3 18.797 6.906 15.534 1 97.1 ? O4 Q9H 302 A 1 
HETATM 5 C C6 Q9H . . . C 3 15.079 5.594 6.549 1 75.26 ? C6 Q9H 302 A 1 
HETATM 6 N N1 Q9H . . . C 3 14.147 3.936 5.048 1 77.81 ? N1 Q9H 302 A 1 
HETATM 7 C C7 Q9H . . . C 3 16.312 8.32 8.596 1 64.99 ? C7 Q9H 302 A 1 
HETATM 8 C C8 Q9H . . . C 3 14.887 9.809 9.691 1 67.09 ? C8 Q9H 302 A 1 
HETATM 9 N N2 Q9H . . . C 3 13.05 5.949 5.363 1 81.01 ? N2 Q9H 302 A 1 
HETATM 10 C C9 Q9H . . . C 3 13.511 9.809 10.309 1 68.34 ? C9 Q9H 302 A 1 
HETATM 11 O O5 Q9H . . . C 3 19.13 9.543 16.031 1 91.61 ? O5 Q9H 302 A 1 
HETATM 12 C C10 Q9H . . . C 3 13.863 10.576 12.517 1 75.2 ? C10 Q9H 302 A 1 
HETATM 13 O O6 Q9H . . . C 3 15.057 11.703 8.176 1 56.62 ? O6 Q9H 302 A 1 
HETATM 14 C C11 Q9H . . . C 3 15.31 10.764 12.639 1 78.05 ? C11 Q9H 302 A 1 
HETATM 15 C C12 Q9H . . . C 3 16.485 10.958 12.664 1 79.81 ? C12 Q9H 302 A 1 
HETATM 16 N N3 Q9H . . . C 3 13.903 7.716 6.764 1 81.98 ? N3 Q9H 302 A 1 
HETATM 17 C C13 Q9H . . . C 3 17.854 11.34 12.577 1 78.19 ? C13 Q9H 302 A 1 
HETATM 18 O O7 Q9H . . . C 3 17.412 10.419 8.029 1 57.58 ? O7 Q9H 302 A 1 
HETATM 19 C C14 Q9H . . . C 3 19.661 12.377 12.132 1 77.12 ? C14 Q9H 302 A 1 
HETATM 20 C C15 Q9H . . . C 3 20.691 13.242 11.712 1 74.49 ? C15 Q9H 302 A 1 
HETATM 21 N N4 Q9H . . . C 3 15.984 7.096 7.864 1 72.3 ? N4 Q9H 302 A 1 
HETATM 22 N N Q9H . . . C 3 13.063 3.846 1.494 1 72.61 ? N Q9H 302 A 1 
HETATM 23 C C Q9H . . . C 3 13.947 3.598 2.635 1 74.77 ? C Q9H 302 A 1 
HETATM 24 O O Q9H . . . C 3 15.389 8.459 9.659 1 68.66 ? O Q9H 302 A 1 
HETATM 25 C C1 Q9H . . . C 3 13.218 3.524 4.01 1 77.5 ? C1 Q9H 302 A 1 
HETATM 26 C C16 Q9H . . . C 3 22.185 11.681 12.536 1 73.97 ? C16 Q9H 302 A 1 
HETATM 27 C C17 Q9H . . . C 3 20.047 11.195 12.739 1 78.21 ? C17 Q9H 302 A 1 
HETATM 28 C C18 Q9H . . . C 3 18.761 9.218 13.657 1 87.86 ? C18 Q9H 302 A 1 
HETATM 29 C C19 Q9H . . . C 3 17.258 7.434 13.727 1 92.7 ? C19 Q9H 302 A 1 
HETATM 30 C C2 Q9H . . . C 3 14.08 5.136 5.65 1 78.39 ? C2 Q9H 302 A 1 
HETATM 31 C C20 Q9H . . . C 3 15.767 7.522 13.499 1 91.77 ? C20 Q9H 302 A 1 
HETATM 32 C C21 Q9H . . . C 3 17.714 7.748 15.155 1 94.14 ? C21 Q9H 302 A 1 
HETATM 33 C C22 Q9H . . . C 3 18.151 9.21 15.054 1 91.09 ? C22 Q9H 302 A 1 
HETATM 34 C C23 Q9H . . . C 3 14.978 10.283 8.248 1 59.11 ? C23 Q9H 302 A 1 
HETATM 35 C C24 Q9H . . . C 3 16.269 9.614 7.763 1 59.62 ? C24 Q9H 302 A 1 
HETATM 36 C C3 Q9H . . . C 3 13.021 7.16 5.928 1 81.64 ? C3 Q9H 302 A 1 
HETATM 37 N N10 Q9H . . . C 3 18.872 10.522 13.028 1 81.04 ? N10 Q9H 302 A 1 
HETATM 38 N N5 Q9H . . . C 3 16.206 5.004 7.072 1 70.91 ? N5 Q9H 302 A 1 
HETATM 39 N N6 Q9H . . . C 3 18.278 12.466 12.036 1 76.13 ? N6 Q9H 302 A 1 
HETATM 40 N N7 Q9H . . . C 3 20.477 14.41 11.098 1 73.08 ? N7 Q9H 302 A 1 
HETATM 41 N N8 Q9H . . . C 3 21.965 12.854 11.934 1 73.17 ? N8 Q9H 302 A 1 
HETATM 42 N N9 Q9H . . . C 3 21.297 10.786 12.975 1 74.92 ? N9 Q9H 302 A 1 
HETATM 43 O O1 Q9H . . . C 3 13.386 10.9 11.216 1 72.1 ? O1 Q9H 302 A 1 
HETATM 44 O O2 Q9H . . . C 3 17.931 8.386 12.87 1 91.1 ? O2 Q9H 302 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#