data_6Z6R # _model_server_result.job_id enlLFzD6teBNCdLUzglWRQ _model_server_result.datetime_utc '2024-11-26 19:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 6Z6R # _exptl.entry_id 6Z6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Z6R _cell.length_a 49.852 _cell.length_b 90.59 _cell.length_c 122.361 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 C MN MN . A MN 801 1_555 F O06 UQK . A UQK 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 C MN MN . A MN 801 1_555 F O09 UQK . A UQK 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 C MN MN . A MN 801 1_555 G O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6Z6R _atom_sites.fract_transf_matrix[1][1] 0.020059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 801 801 MN MN . D 4 BR A 1 802 802 BR BR . E 5 GOL A 1 803 804 GOL GOL . F 6 UQK A 1 804 901 UQK LIG . G 7 HOH A 1 901 15 HOH HOH . G 7 HOH A 2 902 8 HOH HOH . G 7 HOH A 3 903 20 HOH HOH . G 7 HOH A 4 904 112 HOH HOH . G 7 HOH A 5 905 36 HOH HOH . G 7 HOH A 6 906 18 HOH HOH . G 7 HOH A 7 907 14 HOH HOH . G 7 HOH A 8 908 17 HOH HOH . G 7 HOH A 9 909 63 HOH HOH . G 7 HOH A 10 910 16 HOH HOH . G 7 HOH A 11 911 7 HOH HOH . G 7 HOH A 12 912 32 HOH HOH . G 7 HOH A 13 913 37 HOH HOH . G 7 HOH A 14 914 2 HOH HOH . G 7 HOH A 15 915 48 HOH HOH . G 7 HOH A 16 916 52 HOH HOH . G 7 HOH A 17 917 72 HOH HOH . G 7 HOH A 18 918 67 HOH HOH . G 7 HOH A 19 919 33 HOH HOH . G 7 HOH A 20 920 68 HOH HOH . G 7 HOH A 21 921 34 HOH HOH . G 7 HOH A 22 922 13 HOH HOH . G 7 HOH A 23 923 9 HOH HOH . G 7 HOH A 24 924 27 HOH HOH . G 7 HOH A 25 925 66 HOH HOH . G 7 HOH A 26 926 30 HOH HOH . G 7 HOH A 27 927 86 HOH HOH . G 7 HOH A 28 928 64 HOH HOH . G 7 HOH A 29 929 53 HOH HOH . G 7 HOH A 30 930 70 HOH HOH . G 7 HOH A 31 931 51 HOH HOH . G 7 HOH A 32 932 73 HOH HOH . G 7 HOH A 33 933 4 HOH HOH . G 7 HOH A 34 934 6 HOH HOH . G 7 HOH A 35 935 12 HOH HOH . G 7 HOH A 36 936 10 HOH HOH . G 7 HOH A 37 937 40 HOH HOH . G 7 HOH A 38 938 19 HOH HOH . G 7 HOH A 39 939 25 HOH HOH . G 7 HOH A 40 940 5 HOH HOH . G 7 HOH A 41 941 45 HOH HOH . G 7 HOH A 42 942 26 HOH HOH . G 7 HOH A 43 943 101 HOH HOH . G 7 HOH A 44 944 77 HOH HOH . G 7 HOH A 45 945 104 HOH HOH . G 7 HOH A 46 946 65 HOH HOH . G 7 HOH A 47 947 83 HOH HOH . G 7 HOH A 48 948 62 HOH HOH . G 7 HOH A 49 949 47 HOH HOH . G 7 HOH A 50 950 90 HOH HOH . G 7 HOH A 51 951 71 HOH HOH . G 7 HOH A 52 952 80 HOH HOH . G 7 HOH A 53 953 42 HOH HOH . G 7 HOH A 54 954 24 HOH HOH . G 7 HOH A 55 955 87 HOH HOH . G 7 HOH A 56 956 107 HOH HOH . G 7 HOH A 57 957 97 HOH HOH . G 7 HOH A 58 958 23 HOH HOH . G 7 HOH A 59 959 44 HOH HOH . G 7 HOH A 60 960 109 HOH HOH . G 7 HOH A 61 961 96 HOH HOH . G 7 HOH A 62 962 41 HOH HOH . G 7 HOH A 63 963 50 HOH HOH . G 7 HOH A 64 964 35 HOH HOH . G 7 HOH A 65 965 99 HOH HOH . G 7 HOH A 66 966 92 HOH HOH . G 7 HOH A 67 967 108 HOH HOH . G 7 HOH A 68 968 81 HOH HOH . G 7 HOH A 69 969 11 HOH HOH . G 7 HOH A 70 970 75 HOH HOH . G 7 HOH A 71 971 115 HOH HOH . G 7 HOH A 72 972 94 HOH HOH . G 7 HOH A 73 973 59 HOH HOH . G 7 HOH A 74 974 1 HOH HOH . G 7 HOH A 75 975 60 HOH HOH . G 7 HOH A 76 976 69 HOH HOH . G 7 HOH A 77 977 106 HOH HOH . G 7 HOH A 78 978 98 HOH HOH . G 7 HOH A 79 979 111 HOH HOH . G 7 HOH A 80 980 89 HOH HOH . G 7 HOH A 81 981 100 HOH HOH . G 7 HOH A 82 982 85 HOH HOH . G 7 HOH A 83 983 43 HOH HOH . G 7 HOH A 84 984 93 HOH HOH . G 7 HOH A 85 985 3 HOH HOH . G 7 HOH A 86 986 61 HOH HOH . G 7 HOH A 87 987 102 HOH HOH . G 7 HOH A 88 988 28 HOH HOH . G 7 HOH A 89 989 88 HOH HOH . G 7 HOH A 90 990 58 HOH HOH . G 7 HOH A 91 991 55 HOH HOH . G 7 HOH A 92 992 38 HOH HOH . G 7 HOH A 93 993 29 HOH HOH . G 7 HOH A 94 994 49 HOH HOH . G 7 HOH A 95 995 113 HOH HOH . G 7 HOH A 96 996 57 HOH HOH . G 7 HOH A 97 997 78 HOH HOH . G 7 HOH A 98 998 74 HOH HOH . G 7 HOH A 99 999 21 HOH HOH . G 7 HOH A 100 1000 110 HOH HOH . G 7 HOH A 101 1001 91 HOH HOH . G 7 HOH A 102 1002 114 HOH HOH . G 7 HOH A 103 1003 39 HOH HOH . G 7 HOH A 104 1004 54 HOH HOH . G 7 HOH A 105 1005 82 HOH HOH . G 7 HOH A 106 1006 105 HOH HOH . H 7 HOH B 1 201 79 HOH HOH . H 7 HOH B 2 202 31 HOH HOH . H 7 HOH B 3 203 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 78.781 32.411 57.058 1 39.51 ? C1 GOL 803 A 1 HETATM 2 O O1 GOL . . . E 5 79.455 32.759 55.89 1 41.11 ? O1 GOL 803 A 1 HETATM 3 C C2 GOL . . . E 5 78.159 30.994 56.862 1 49.54 ? C2 GOL 803 A 1 HETATM 4 O O2 GOL . . . E 5 78.922 29.997 57.512 1 73.86 ? O2 GOL 803 A 1 HETATM 5 C C3 GOL . . . E 5 76.737 31.166 57.447 1 45.82 ? C3 GOL 803 A 1 HETATM 6 O O3 GOL . . . E 5 76.058 29.907 57.414 1 40.22 ? O3 GOL 803 A 1 HETATM 7 H H11 GOL . . . E 5 78.084 33.044 57.287 1 47.5 ? H11 GOL 803 A 1 HETATM 8 H H12 GOL . . . E 5 79.381 32.4 57.82 1 47.5 ? H12 GOL 803 A 1 HETATM 9 H HO1 GOL . . . E 5 80.28 32.805 56.091 1 49.43 ? HO1 GOL 803 A 1 HETATM 10 H H2 GOL . . . E 5 78.132 30.752 55.923 1 59.54 ? H2 GOL 803 A 1 HETATM 11 H HO2 GOL . . . E 5 78.41 29.338 57.67 1 88.73 ? HO2 GOL 803 A 1 HETATM 12 H H31 GOL . . . E 5 76.285 31.837 56.946 1 55.08 ? H31 GOL 803 A 1 HETATM 13 H H32 GOL . . . E 5 76.798 31.518 58.349 1 55.08 ? H32 GOL 803 A 1 HETATM 14 H HO3 GOL . . . E 5 75.789 29.754 58.206 1 48.36 ? HO3 GOL 803 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #