data_6Z7U
#
_model_server_result.job_id            5D54m-d1iQ0nXi3Ir-lisA 
_model_server_result.datetime_utc      '2025-02-26 19:34:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z7u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    6Z7U 
#
_exptl.entry_id    6Z7U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Z7U 
_cell.length_a            47.373 
_cell.length_b            88.697 
_cell.length_c            199.891 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z7U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6Z7U 
_atom_sites.fract_transf_matrix[1][1]    0.021109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 801 801 EDO EDO . 
C 3 ADP A 1 802 1 ADP ADP . 
D 4 BIT A 1 803 2 BIT BIT . 
E 2 EDO A 1 804 3 EDO EDO . 
F 2 EDO A 1 805 4 EDO EDO . 
G 2 EDO A 1 806 5 EDO EDO . 
H 2 EDO A 1 807 6 EDO EDO . 
I 2 EDO A 1 808 7 EDO EDO . 
J 2 EDO A 1 809 8 EDO EDO . 
K 2 EDO A 1 810 9 EDO EDO . 
L 2 EDO A 1 811 10 EDO EDO . 
M 5 HOH A 1 901 31 HOH HOH . 
M 5 HOH A 2 902 51 HOH HOH . 
M 5 HOH A 3 903 41 HOH HOH . 
M 5 HOH A 4 904 5 HOH HOH . 
M 5 HOH A 5 905 38 HOH HOH . 
M 5 HOH A 6 906 3 HOH HOH . 
M 5 HOH A 7 907 52 HOH HOH . 
M 5 HOH A 8 908 1 HOH HOH . 
M 5 HOH A 9 909 21 HOH HOH . 
M 5 HOH A 10 910 8 HOH HOH . 
M 5 HOH A 11 911 42 HOH HOH . 
M 5 HOH A 12 912 40 HOH HOH . 
M 5 HOH A 13 913 9 HOH HOH . 
M 5 HOH A 14 914 50 HOH HOH . 
M 5 HOH A 15 915 37 HOH HOH . 
M 5 HOH A 16 916 18 HOH HOH . 
M 5 HOH A 17 917 7 HOH HOH . 
M 5 HOH A 18 918 43 HOH HOH . 
M 5 HOH A 19 919 22 HOH HOH . 
M 5 HOH A 20 920 25 HOH HOH . 
M 5 HOH A 21 921 26 HOH HOH . 
M 5 HOH A 22 922 49 HOH HOH . 
M 5 HOH A 23 923 55 HOH HOH . 
M 5 HOH A 24 924 36 HOH HOH . 
M 5 HOH A 25 925 30 HOH HOH . 
M 5 HOH A 26 926 4 HOH HOH . 
M 5 HOH A 27 927 48 HOH HOH . 
M 5 HOH A 28 928 14 HOH HOH . 
M 5 HOH A 29 929 10 HOH HOH . 
M 5 HOH A 30 930 44 HOH HOH . 
M 5 HOH A 31 931 47 HOH HOH . 
M 5 HOH A 32 932 32 HOH HOH . 
M 5 HOH A 33 933 20 HOH HOH . 
M 5 HOH A 34 934 28 HOH HOH . 
M 5 HOH A 35 935 54 HOH HOH . 
M 5 HOH A 36 936 59 HOH HOH . 
M 5 HOH A 37 937 17 HOH HOH . 
M 5 HOH A 38 938 39 HOH HOH . 
M 5 HOH A 39 939 46 HOH HOH . 
M 5 HOH A 40 940 13 HOH HOH . 
M 5 HOH A 41 941 6 HOH HOH . 
M 5 HOH A 42 942 57 HOH HOH . 
M 5 HOH A 43 943 23 HOH HOH . 
M 5 HOH A 44 944 53 HOH HOH . 
M 5 HOH A 45 945 58 HOH HOH . 
M 5 HOH A 46 946 12 HOH HOH . 
M 5 HOH A 47 947 24 HOH HOH . 
M 5 HOH A 48 948 29 HOH HOH . 
M 5 HOH A 49 949 19 HOH HOH . 
M 5 HOH A 50 950 33 HOH HOH . 
M 5 HOH A 51 951 45 HOH HOH . 
M 5 HOH A 52 952 11 HOH HOH . 
M 5 HOH A 53 953 56 HOH HOH . 
M 5 HOH A 54 954 34 HOH HOH . 
M 5 HOH A 55 955 16 HOH HOH . 
M 5 HOH A 56 956 35 HOH HOH . 
M 5 HOH A 57 957 27 HOH HOH . 
M 5 HOH A 58 958 2 HOH HOH . 
M 5 HOH A 59 959 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -5.665 14.154 -13.674 1 61.72 ? PB ADP 802 A 1 
HETATM 2 O O1B ADP . . . C 3 -6.784 14.422 -14.654 1 61.77 ? O1B ADP 802 A 1 
HETATM 3 O O2B ADP . . . C 3 -4.377 13.69 -14.312 1 73.16 ? O2B ADP 802 A 1 
HETATM 4 O O3B ADP . . . C 3 -6.054 13.346 -12.459 1 62.09 ? O3B ADP 802 A 1 
HETATM 5 P PA ADP . . . C 3 -5.125 16.921 -13.955 1 62.22 ? PA ADP 802 A 1 
HETATM 6 O O1A ADP . . . C 3 -5.069 16.512 -15.409 1 56.99 ? O1A ADP 802 A 1 
HETATM 7 O O2A ADP . . . C 3 -6.124 17.969 -13.525 1 52.88 ? O2A ADP 802 A 1 
HETATM 8 O O3A ADP . . . C 3 -5.318 15.6 -13.052 1 67.34 ? O3A ADP 802 A 1 
HETATM 9 O O5' ADP . . . C 3 -3.672 17.421 -13.489 1 58 ? O5' ADP 802 A 1 
HETATM 10 C C5' ADP . . . C 3 -2.491 16.783 -13.955 1 53.06 ? C5' ADP 802 A 1 
HETATM 11 C C4' ADP . . . C 3 -1.328 17.241 -13.085 1 58.95 ? C4' ADP 802 A 1 
HETATM 12 O O4' ADP . . . C 3 -0.94 18.582 -13.428 1 57.2 ? O4' ADP 802 A 1 
HETATM 13 C C3' ADP . . . C 3 -1.64 17.248 -11.59 1 59.73 ? C3' ADP 802 A 1 
HETATM 14 O O3' ADP . . . C 3 -0.583 16.588 -10.893 1 66.19 ? O3' ADP 802 A 1 
HETATM 15 C C2' ADP . . . C 3 -1.705 18.707 -11.161 1 54.67 ? C2' ADP 802 A 1 
HETATM 16 O O2' ADP . . . C 3 -0.919 18.907 -9.988 1 76.01 ? O2' ADP 802 A 1 
HETATM 17 C C1' ADP . . . C 3 -1.117 19.496 -12.329 1 56.03 ? C1' ADP 802 A 1 
HETATM 18 N N9 ADP . . . C 3 -1.956 20.644 -12.755 1 48.84 ? N9 ADP 802 A 1 
HETATM 19 C C8 ADP . . . C 3 -3.061 20.594 -13.523 1 48.08 ? C8 ADP 802 A 1 
HETATM 20 N N7 ADP . . . C 3 -3.562 21.842 -13.716 1 43.83 ? N7 ADP 802 A 1 
HETATM 21 C C5 ADP . . . C 3 -2.766 22.71 -13.067 1 45.56 ? C5 ADP 802 A 1 
HETATM 22 C C6 ADP . . . C 3 -2.726 24.174 -12.86 1 44.31 ? C6 ADP 802 A 1 
HETATM 23 N N6 ADP . . . C 3 -3.674 24.968 -13.411 1 44.88 ? N6 ADP 802 A 1 
HETATM 24 N N1 ADP . . . C 3 -1.719 24.679 -12.11 1 50.31 ? N1 ADP 802 A 1 
HETATM 25 C C2 ADP . . . C 3 -0.773 23.892 -11.561 1 59.11 ? C2 ADP 802 A 1 
HETATM 26 N N3 ADP . . . C 3 -0.755 22.555 -11.713 1 56.38 ? N3 ADP 802 A 1 
HETATM 27 C C4 ADP . . . C 3 -1.705 21.916 -12.438 1 50.34 ? C4 ADP 802 A 1 
HETATM 28 H "H5'1" ADP . . . C 3 -2.601 15.698 -13.897 1 63.67 ? "H5'1" ADP 802 A 1 
HETATM 29 H "H5'2" ADP . . . C 3 -2.308 17.047 -14.999 1 63.67 ? "H5'2" ADP 802 A 1 
HETATM 30 H H4' ADP . . . C 3 -0.527 16.515 -13.28 1 70.74 ? H4' ADP 802 A 1 
HETATM 31 H H3' ADP . . . C 3 -2.583 16.729 -11.368 1 71.68 ? H3' ADP 802 A 1 
HETATM 32 H H2' ADP . . . C 3 -2.729 19.024 -10.921 1 65.6 ? H2' ADP 802 A 1 
HETATM 33 H HO2' ADP . . . C 3 -1.266 18.36 -9.27 1 91.21 ? HO2' ADP 802 A 1 
HETATM 34 H H1' ADP . . . C 3 -0.165 19.925 -11.987 1 67.23 ? H1' ADP 802 A 1 
HETATM 35 H H8 ADP . . . C 3 -3.489 19.686 -13.931 1 57.7 ? H8 ADP 802 A 1 
HETATM 36 H HN61 ADP . . . C 3 -4.413 24.559 -13.965 1 53.86 ? HN61 ADP 802 A 1 
HETATM 37 H HN62 ADP . . . C 3 -3.644 25.966 -13.27 1 53.86 ? HN62 ADP 802 A 1 
HETATM 38 H H2 ADP . . . C 3 0.008 24.357 -10.971 1 70.93 ? H2 ADP 802 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#