data_6Z81
#
_model_server_result.job_id            01BtY1Rp9HXtoQfMWr89-g 
_model_server_result.datetime_utc      '2024-10-20 00:30:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":302}' 
#
_entry.id    6Z81 
#
_exptl.entry_id    6Z81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         109.38 
_cell.angle_beta          92 
_cell.angle_gamma         116.94 
_cell.entry_id            6Z81 
_cell.length_a            63.23 
_cell.length_b            69.25 
_cell.length_c            86.54 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,O,P,Y,Z,AA,BA,CA,HA,JA 1 1 
B,D,Q,R,S,T,U,V,W,X,DA,EA,FA,GA,IA,KA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 Z N N 
? 10 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 111 A HIS 111 1_555 G ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc2 A NE2 HIS 115 A HIS 115 1_555 G ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 A OD1 ASP 300 A ASP 300 1_555 G ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc4 G ZN ZN . A ZN 403 1_555 H OX QCB . A QCB 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 G ZN ZN . A ZN 403 1_555 H OP1 QCB . A QCB 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc6 N O1 PEG . A PEG 410 1_555 Y NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? 
metalc ? metalc7 B NE2 HIS 111 B HIS 111 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc8 B NE2 HIS 115 B HIS 115 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc9 B OD1 ASP 300 B ASP 300 1_555 S ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc10 S ZN ZN . B ZN 403 1_555 T OP3 QCB . B QCB 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc11 S ZN ZN . B ZN 403 1_555 T OX QCB . B QCB 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 19 n n 
P O2P AMP sing 20 n n 
P O3P AMP sing 21 n n 
P O5' AMP sing 22 n n 
O2P HOP2 AMP sing 23 n n 
O3P HOP3 AMP sing 24 n n 
O5' C5' AMP sing 25 n n 
C5' C4' AMP sing 26 n n 
C5' "H5'1" AMP sing 27 n n 
C5' "H5'2" AMP sing 28 n n 
C4' O4' AMP sing 29 n n 
C4' C3' AMP sing 30 n n 
C4' H4' AMP sing 31 n n 
O4' C1' AMP sing 32 n n 
C3' O3' AMP sing 33 n n 
C3' C2' AMP sing 34 n n 
C3' H3' AMP sing 35 n n 
O3' HO3' AMP sing 36 n n 
C2' O2' AMP sing 37 n n 
C2' C1' AMP sing 38 n n 
C2' H2' AMP sing 39 n n 
O2' HO2' AMP sing 40 n n 
C1' N9 AMP sing 41 n n 
C1' H1' AMP sing 42 n n 
N9 C8 AMP sing 43 n y 
N9 C4 AMP sing 44 n y 
C8 N7 AMP doub 45 n y 
C8 H8 AMP sing 46 n n 
N7 C5 AMP sing 47 n y 
C5 C6 AMP sing 48 n y 
C5 C4 AMP doub 49 n y 
C6 N6 AMP sing 50 n n 
C6 N1 AMP doub 51 n y 
N6 HN61 AMP sing 52 n n 
N6 HN62 AMP sing 53 n n 
N1 C2 AMP sing 54 n y 
C2 N3 AMP doub 55 n y 
C2 H2 AMP sing 56 n n 
N3 C4 AMP sing 57 n y 
#
_atom_sites.entry_id                     6Z81 
_atom_sites.fract_transf_matrix[1][1]    0.015815 
_atom_sites.fract_transf_matrix[1][2]    0.008037 
_atom_sites.fract_transf_matrix[1][3]    0.004006 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016198 
_atom_sites.fract_transf_matrix[2][3]    0.006865 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NI A 1 401 353 NI NI . 
F 3 NI A 1 402 355 NI NI . 
G 4 ZN A 1 403 360 ZN ZN . 
H 5 QCB A 1 404 361 QCB BK9 . 
I 6 SO4 A 1 405 387 SO4 SO4 . 
J 6 SO4 A 1 406 388 SO4 SO4 . 
K 7 NA A 1 407 394 NA NA . 
L 8 ACT A 1 408 401 ACT ACT . 
M 8 ACT A 1 409 402 ACT ACT . 
N 9 PEG A 1 410 403 PEG PEG . 
O 9 PEG A 1 411 501 PEG PEG . 
P 8 ACT A 1 412 601 ACT ACT . 
Q 3 NI B 1 401 353 NI NI . 
R 3 NI B 1 402 354 NI NI . 
S 4 ZN B 1 403 360 ZN ZN . 
T 5 QCB B 1 404 361 QCB BK9 . 
U 6 SO4 B 1 405 387 SO4 SO4 . 
V 6 SO4 B 1 406 388 SO4 SO4 . 
W 8 ACT B 1 407 401 ACT ACT . 
X 9 PEG B 1 408 501 PEG PEG . 
Y 7 NA C 1 301 391 NA NA . 
Z 10 AMP C 1 302 401 AMP AMP . 
AA 8 ACT C 1 303 402 ACT ACT . 
BA 8 ACT C 1 304 403 ACT ACT . 
CA 8 ACT C 1 305 404 ACT ACT . 
DA 7 NA D 1 301 395 NA NA . 
EA 10 AMP D 1 302 401 AMP AMP . 
FA 8 ACT D 1 303 402 ACT ACT . 
GA 8 ACT D 1 304 501 ACT ACT . 
HA 11 HOH A 1 501 36 HOH HOH . 
HA 11 HOH A 2 502 418 HOH HOH . 
HA 11 HOH A 3 503 431 HOH HOH . 
HA 11 HOH A 4 504 416 HOH HOH . 
HA 11 HOH A 5 505 412 HOH HOH . 
HA 11 HOH A 6 506 37 HOH HOH . 
HA 11 HOH A 7 507 433 HOH HOH . 
HA 11 HOH A 8 508 35 HOH HOH . 
HA 11 HOH A 9 509 421 HOH HOH . 
HA 11 HOH A 10 510 420 HOH HOH . 
HA 11 HOH A 11 511 33 HOH HOH . 
HA 11 HOH A 12 512 414 HOH HOH . 
HA 11 HOH A 13 513 426 HOH HOH . 
HA 11 HOH A 14 514 425 HOH HOH . 
HA 11 HOH A 15 515 422 HOH HOH . 
HA 11 HOH A 16 516 410 HOH HOH . 
HA 11 HOH A 17 517 421 HOH HOH . 
HA 11 HOH A 18 518 430 HOH HOH . 
HA 11 HOH A 19 519 407 HOH HOH . 
HA 11 HOH A 20 520 429 HOH HOH . 
HA 11 HOH A 21 521 14 HOH HOH . 
HA 11 HOH A 22 522 26 HOH HOH . 
HA 11 HOH A 23 523 27 HOH HOH . 
HA 11 HOH A 24 524 9 HOH HOH . 
HA 11 HOH A 25 525 7 HOH HOH . 
HA 11 HOH A 26 526 440 HOH HOH . 
HA 11 HOH A 27 527 16 HOH HOH . 
HA 11 HOH A 28 528 6 HOH HOH . 
HA 11 HOH A 29 529 11 HOH HOH . 
HA 11 HOH A 30 530 17 HOH HOH . 
IA 11 HOH B 1 501 421 HOH HOH . 
IA 11 HOH B 2 502 423 HOH HOH . 
IA 11 HOH B 3 503 426 HOH HOH . 
IA 11 HOH B 4 504 434 HOH HOH . 
IA 11 HOH B 5 505 411 HOH HOH . 
IA 11 HOH B 6 506 427 HOH HOH . 
IA 11 HOH B 7 507 31 HOH HOH . 
IA 11 HOH B 8 508 410 HOH HOH . 
IA 11 HOH B 9 509 406 HOH HOH . 
IA 11 HOH B 10 510 417 HOH HOH . 
IA 11 HOH B 11 511 430 HOH HOH . 
IA 11 HOH B 12 512 433 HOH HOH . 
IA 11 HOH B 13 513 414 HOH HOH . 
IA 11 HOH B 14 514 436 HOH HOH . 
IA 11 HOH B 15 515 424 HOH HOH . 
IA 11 HOH B 16 516 410 HOH HOH . 
IA 11 HOH B 17 517 412 HOH HOH . 
IA 11 HOH B 18 518 432 HOH HOH . 
IA 11 HOH B 19 519 5 HOH HOH . 
IA 11 HOH B 20 520 428 HOH HOH . 
IA 11 HOH B 21 521 439 HOH HOH . 
IA 11 HOH B 22 522 12 HOH HOH . 
IA 11 HOH B 23 523 13 HOH HOH . 
IA 11 HOH B 24 524 34 HOH HOH . 
IA 11 HOH B 25 525 418 HOH HOH . 
IA 11 HOH B 26 526 10 HOH HOH . 
IA 11 HOH B 27 527 1 HOH HOH . 
IA 11 HOH B 28 528 18 HOH HOH . 
IA 11 HOH B 29 529 23 HOH HOH . 
IA 11 HOH B 30 530 3 HOH HOH . 
IA 11 HOH B 31 531 29 HOH HOH . 
IA 11 HOH B 32 532 4 HOH HOH . 
JA 11 HOH C 1 401 406 HOH HOH . 
JA 11 HOH C 2 402 422 HOH HOH . 
JA 11 HOH C 3 403 419 HOH HOH . 
JA 11 HOH C 4 404 414 HOH HOH . 
JA 11 HOH C 5 405 427 HOH HOH . 
JA 11 HOH C 6 406 409 HOH HOH . 
JA 11 HOH C 7 407 421 HOH HOH . 
JA 11 HOH C 8 408 28 HOH HOH . 
JA 11 HOH C 9 409 429 HOH HOH . 
JA 11 HOH C 10 410 428 HOH HOH . 
JA 11 HOH C 11 411 32 HOH HOH . 
JA 11 HOH C 12 412 425 HOH HOH . 
JA 11 HOH C 13 413 417 HOH HOH . 
JA 11 HOH C 14 414 424 HOH HOH . 
JA 11 HOH C 15 415 418 HOH HOH . 
JA 11 HOH C 16 416 24 HOH HOH . 
JA 11 HOH C 17 417 15 HOH HOH . 
JA 11 HOH C 18 418 21 HOH HOH . 
KA 11 HOH D 1 401 413 HOH HOH . 
KA 11 HOH D 2 402 409 HOH HOH . 
KA 11 HOH D 3 403 419 HOH HOH . 
KA 11 HOH D 4 404 423 HOH HOH . 
KA 11 HOH D 5 405 30 HOH HOH . 
KA 11 HOH D 6 406 425 HOH HOH . 
KA 11 HOH D 7 407 411 HOH HOH . 
KA 11 HOH D 8 408 412 HOH HOH . 
KA 11 HOH D 9 409 414 HOH HOH . 
KA 11 HOH D 10 410 419 HOH HOH . 
KA 11 HOH D 11 411 415 HOH HOH . 
KA 11 HOH D 12 412 416 HOH HOH . 
KA 11 HOH D 13 413 407 HOH HOH . 
KA 11 HOH D 14 414 417 HOH HOH . 
KA 11 HOH D 15 415 427 HOH HOH . 
KA 11 HOH D 16 416 8 HOH HOH . 
KA 11 HOH D 17 417 426 HOH HOH . 
KA 11 HOH D 18 418 22 HOH HOH . 
KA 11 HOH D 19 419 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . Z 10 24.916 -20.299 -46.88 0.65 60.2 ? P AMP 302 C 1 
HETATM 2 O O1P AMP . . . Z 10 23.943 -20.164 -48.077 0.65 60.63 ? O1P AMP 302 C 1 
HETATM 3 O O2P AMP . . . Z 10 26.027 -19.224 -47.042 0.65 59.35 ? O2P AMP 302 C 1 
HETATM 4 O O3P AMP . . . Z 10 24.207 -20.204 -45.552 0.65 58.9 ? O3P AMP 302 C 1 
HETATM 5 O O5' AMP . . . Z 10 25.649 -21.778 -47.022 0.65 55.8 ? O5' AMP 302 C 1 
HETATM 6 C C5' AMP . . . Z 10 26.041 -22.359 -48.29 0.65 50.43 ? C5' AMP 302 C 1 
HETATM 7 C C4' AMP . . . Z 10 26.066 -23.867 -48.202 0.65 46.91 ? C4' AMP 302 C 1 
HETATM 8 O O4' AMP . . . Z 10 26.965 -24.288 -47.152 0.65 45.68 ? O4' AMP 302 C 1 
HETATM 9 C C3' AMP . . . Z 10 24.744 -24.537 -47.849 0.65 44.55 ? C3' AMP 302 C 1 
HETATM 10 O O3' AMP . . . Z 10 23.841 -24.598 -48.949 0.65 42.81 ? O3' AMP 302 C 1 
HETATM 11 C C2' AMP . . . Z 10 25.205 -25.895 -47.302 0.65 41.54 ? C2' AMP 302 C 1 
HETATM 12 O O2' AMP . . . Z 10 25.403 -26.909 -48.279 0.65 37.95 ? O2' AMP 302 C 1 
HETATM 13 C C1' AMP . . . Z 10 26.538 -25.538 -46.63 0.65 43.97 ? C1' AMP 302 C 1 
HETATM 14 N N9 AMP . . . Z 10 26.458 -25.463 -45.17 0.65 44.5 ? N9 AMP 302 C 1 
HETATM 15 C C8 AMP . . . Z 10 26.035 -24.407 -44.404 0.65 44.31 ? C8 AMP 302 C 1 
HETATM 16 N N7 AMP . . . Z 10 25.914 -24.684 -43.128 0.65 43.92 ? N7 AMP 302 C 1 
HETATM 17 C C5 AMP . . . Z 10 26.283 -26.019 -43.045 0.65 43.24 ? C5 AMP 302 C 1 
HETATM 18 C C6 AMP . . . Z 10 26.303 -26.937 -41.974 0.65 41.91 ? C6 AMP 302 C 1 
HETATM 19 N N6 AMP . . . Z 10 25.759 -26.692 -40.782 0.65 44.47 ? N6 AMP 302 C 1 
HETATM 20 N N1 AMP . . . Z 10 26.745 -28.19 -42.225 0.65 40.24 ? N1 AMP 302 C 1 
HETATM 21 C C2 AMP . . . Z 10 27.088 -28.513 -43.478 0.65 42.69 ? C2 AMP 302 C 1 
HETATM 22 N N3 AMP . . . Z 10 27.061 -27.749 -44.576 0.65 44.03 ? N3 AMP 302 C 1 
HETATM 23 C C4 AMP . . . Z 10 26.646 -26.504 -44.292 0.65 43.95 ? C4 AMP 302 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#