data_6Z85
#
_model_server_result.job_id            mz-yOK4WqYYpFpROydqlcQ 
_model_server_result.datetime_utc      '2024-11-05 14:34:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6z85 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":302}' 
#
_entry.id    6Z85 
#
_exptl.entry_id    6Z85 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              239.231 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7,8-DIHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Z85 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Z85 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 V N N 
? 4 X N N 
? 4 Z N N 
? 4 BA N N 
? 4 DA N N 
? 4 FA N N 
? 4 HA N N 
? 4 JA N N 
? 4 LA N N 
? 4 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 115 A CYS 141 1_555 U ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 A SG CYS 186 A CYS 212 1_555 U ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc3 L SG CYS 115 C CYS 141 1_555 W ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc4 L SG CYS 186 C CYS 212 1_555 W ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc5 M SG CYS 115 D CYS 141 1_555 Y ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc6 M SG CYS 186 D CYS 212 1_555 Y ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc7 N SG CYS 115 B CYS 141 1_555 AA ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc8 N SG CYS 186 B CYS 212 1_555 AA ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc9 O SG CYS 115 E CYS 141 1_555 CA ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc10 O SG CYS 186 E CYS 212 1_555 CA ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc11 P SG CYS 115 G CYS 141 1_555 EA ZN ZN . G ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc12 P SG CYS 186 G CYS 212 1_555 EA ZN ZN . G ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc13 Q SG CYS 115 H CYS 141 1_555 GA ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc14 Q SG CYS 186 H CYS 212 1_555 GA ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc15 R SG CYS 115 I CYS 141 1_555 IA ZN ZN . I ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc16 R SG CYS 186 I CYS 212 1_555 IA ZN ZN . I ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc17 S SG CYS 115 J CYS 141 1_555 KA ZN ZN . J ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc18 S SG CYS 186 J CYS 212 1_555 KA ZN ZN . J ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc19 T SG CYS 115 F CYS 141 1_555 MA ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc20 T SG CYS 186 F CYS 212 1_555 MA ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
#
_chem_comp.formula           'C9 H13 N5 O3' 
_chem_comp.formula_weight    239.231 
_chem_comp.id                HBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7,8-DIHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HBI doub 129 n y 
N1 C8A HBI sing 130 n y 
N2 C2 HBI sing 131 n n 
N2 HN21 HBI sing 132 n n 
N2 HN22 HBI sing 133 n n 
C2 N3 HBI sing 134 n y 
N3 C4 HBI sing 135 n y 
N3 H3 HBI sing 136 n n 
C4 O4 HBI doub 137 n n 
C4 C4A HBI sing 138 n y 
C4A C8A HBI doub 139 n y 
C4A N5 HBI sing 140 n n 
C8A N8 HBI sing 141 n n 
N8 C7 HBI sing 142 n n 
N8 H8 HBI sing 143 n n 
C7 C6 HBI sing 144 n n 
C7 H71 HBI sing 145 n n 
C7 H72 HBI sing 146 n n 
C6 N5 HBI doub 147 n n 
C6 C9 HBI sing 148 n n 
C9 O9 HBI sing 149 n n 
C9 C10 HBI sing 150 n n 
C9 H9 HBI sing 151 n n 
O9 HO9 HBI sing 152 n n 
C10 O10 HBI sing 153 n n 
C10 C11 HBI sing 154 n n 
C10 H10 HBI sing 155 n n 
O10 HO1 HBI sing 156 n n 
C11 H111 HBI sing 157 n n 
C11 H112 HBI sing 158 n n 
C11 H113 HBI sing 159 n n 
#
_atom_sites.entry_id                     6Z85 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 3 ZN A 1 301 251 ZN ZN . 
V 4 HBI A 1 302 1101 HBI XXX . 
W 3 ZN C 1 301 251 ZN ZN . 
X 4 HBI C 1 302 1101 HBI XXX . 
Y 3 ZN D 1 301 251 ZN ZN . 
Z 4 HBI D 1 302 1101 HBI XXX . 
AA 3 ZN B 1 301 251 ZN ZN . 
BA 4 HBI B 1 302 1101 HBI XXX . 
CA 3 ZN E 1 301 251 ZN ZN . 
DA 4 HBI E 1 302 1101 HBI XXX . 
EA 3 ZN G 1 301 251 ZN ZN . 
FA 4 HBI G 1 302 1101 HBI XXX . 
GA 3 ZN H 1 301 251 ZN ZN . 
HA 4 HBI H 1 302 1101 HBI XXX . 
IA 3 ZN I 1 301 251 ZN ZN . 
JA 4 HBI I 1 302 1101 HBI XXX . 
KA 3 ZN J 1 301 251 ZN ZN . 
LA 4 HBI J 1 302 1101 HBI XXX . 
MA 3 ZN F 1 301 251 ZN ZN . 
NA 4 HBI F 1 302 1101 HBI XXX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HBI . . . Z 4 115.961 118.973 156.028 1 0 ? N1 HBI 302 D 1 
HETATM 2 N N2 HBI . . . Z 4 117.244 119.19 154.135 1 0 ? N2 HBI 302 D 1 
HETATM 3 C C2 HBI . . . Z 4 116.89 119.622 155.343 1 0 ? C2 HBI 302 D 1 
HETATM 4 N N3 HBI . . . Z 4 117.521 120.728 155.809 1 0 ? N3 HBI 302 D 1 
HETATM 5 C C4 HBI . . . Z 4 117.282 121.313 157.027 1 0 ? C4 HBI 302 D 1 
HETATM 6 O O4 HBI . . . Z 4 117.879 122.332 157.352 1 0 ? O4 HBI 302 D 1 
HETATM 7 C C4A HBI . . . Z 4 116.306 120.646 157.796 1 0 ? C4A HBI 302 D 1 
HETATM 8 C C8A HBI . . . Z 4 115.669 119.46 157.263 1 0 ? C8A HBI 302 D 1 
HETATM 9 N N8 HBI . . . Z 4 114.782 118.797 158.029 1 0 ? N8 HBI 302 D 1 
HETATM 10 C C7 HBI . . . Z 4 114.496 119.235 159.384 1 0 ? C7 HBI 302 D 1 
HETATM 11 C C6 HBI . . . Z 4 115.11 120.563 159.713 1 0 ? C6 HBI 302 D 1 
HETATM 12 N N5 HBI . . . Z 4 115.97 121.186 159.003 1 0 ? N5 HBI 302 D 1 
HETATM 13 C C9 HBI . . . Z 4 114.582 121.229 160.95 1 0 ? C9 HBI 302 D 1 
HETATM 14 O O9 HBI . . . Z 4 114.103 120.237 161.837 1 0 ? O9 HBI 302 D 1 
HETATM 15 C C10 HBI . . . Z 4 115.682 122.025 161.646 1 0 ? C10 HBI 302 D 1 
HETATM 16 O O10 HBI . . . Z 4 115.78 123.325 161.062 1 0 ? O10 HBI 302 D 1 
HETATM 17 C C11 HBI . . . Z 4 115.437 122.151 163.134 1 0 ? C11 HBI 302 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#