data_6Z87 # _model_server_result.job_id Fr59tCH1V7uKNYvyfDuPDQ _model_server_result.datetime_utc '2024-11-05 14:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":300}' # _entry.id 6Z87 # _exptl.entry_id 6Z87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Z87 _cell.length_a 109.877 _cell.length_b 109.877 _cell.length_c 387.247 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 64.541167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 115 A CYS 141 1_555 F ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 A ND1 HIS 118 A HIS 144 1_555 F ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc3 A SG CYS 186 A CYS 212 1_555 F ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 B SG CYS 115 B CYS 141 1_555 G ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 B ND1 HIS 118 B HIS 144 1_555 G ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc6 B SG CYS 186 B CYS 212 1_555 G ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc7 C SG CYS 115 C CYS 141 1_555 H ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 C ND1 HIS 118 C HIS 144 1_555 H ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc9 C SG CYS 186 C CYS 212 1_555 H ZN ZN . C ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 D SG CYS 115 D CYS 141 1_555 I ZN ZN . D ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc11 D ND1 HIS 118 D HIS 144 1_555 I ZN ZN . D ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 D SG CYS 186 D CYS 212 1_555 I ZN ZN . D ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc13 E SG CYS 115 E CYS 141 1_555 J ZN ZN . E ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc14 E ND1 HIS 118 E HIS 144 1_555 J ZN ZN . E ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 E SG CYS 186 E CYS 212 1_555 J ZN ZN . E ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Z87 _atom_sites.fract_transf_matrix[1][1] 0.009101 _atom_sites.fract_transf_matrix[1][2] 0.005255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ZN A 1 300 300 ZN ZN . G 2 ZN B 1 300 300 ZN ZN . H 2 ZN C 1 300 300 ZN ZN . I 2 ZN D 1 300 300 ZN ZN . J 2 ZN E 1 300 300 ZN ZN . K 3 HOH A 1 401 23 HOH HOH . K 3 HOH A 2 402 41 HOH HOH . K 3 HOH A 3 403 18 HOH HOH . K 3 HOH A 4 404 10 HOH HOH . K 3 HOH A 5 405 62 HOH HOH . K 3 HOH A 6 406 108 HOH HOH . K 3 HOH A 7 407 102 HOH HOH . K 3 HOH A 8 408 57 HOH HOH . K 3 HOH A 9 409 81 HOH HOH . K 3 HOH A 10 410 112 HOH HOH . K 3 HOH A 11 411 32 HOH HOH . K 3 HOH A 12 412 79 HOH HOH . K 3 HOH A 13 413 61 HOH HOH . K 3 HOH A 14 414 107 HOH HOH . K 3 HOH A 15 415 117 HOH HOH . K 3 HOH A 16 416 128 HOH HOH . K 3 HOH A 17 417 47 HOH HOH . K 3 HOH A 18 418 54 HOH HOH . K 3 HOH A 19 419 17 HOH HOH . K 3 HOH A 20 420 68 HOH HOH . K 3 HOH A 21 421 72 HOH HOH . K 3 HOH A 22 422 89 HOH HOH . K 3 HOH A 23 423 50 HOH HOH . K 3 HOH A 24 424 160 HOH HOH . K 3 HOH A 25 425 135 HOH HOH . K 3 HOH A 26 426 148 HOH HOH . L 3 HOH B 1 401 39 HOH HOH . L 3 HOH B 2 402 4 HOH HOH . L 3 HOH B 3 403 36 HOH HOH . L 3 HOH B 4 404 119 HOH HOH . L 3 HOH B 5 405 58 HOH HOH . L 3 HOH B 6 406 53 HOH HOH . L 3 HOH B 7 407 94 HOH HOH . L 3 HOH B 8 408 74 HOH HOH . L 3 HOH B 9 409 8 HOH HOH . L 3 HOH B 10 410 33 HOH HOH . M 3 HOH C 1 401 1 HOH HOH . M 3 HOH C 2 402 64 HOH HOH . M 3 HOH C 3 403 144 HOH HOH . M 3 HOH C 4 404 7 HOH HOH . M 3 HOH C 5 405 80 HOH HOH . M 3 HOH C 6 406 123 HOH HOH . M 3 HOH C 7 407 15 HOH HOH . M 3 HOH C 8 408 73 HOH HOH . M 3 HOH C 9 409 139 HOH HOH . M 3 HOH C 10 410 22 HOH HOH . M 3 HOH C 11 411 3 HOH HOH . M 3 HOH C 12 412 70 HOH HOH . M 3 HOH C 13 413 20 HOH HOH . M 3 HOH C 14 414 99 HOH HOH . M 3 HOH C 15 415 85 HOH HOH . M 3 HOH C 16 416 147 HOH HOH . M 3 HOH C 17 417 114 HOH HOH . M 3 HOH C 18 418 24 HOH HOH . M 3 HOH C 19 419 38 HOH HOH . M 3 HOH C 20 420 37 HOH HOH . M 3 HOH C 21 421 162 HOH HOH . M 3 HOH C 22 422 6 HOH HOH . M 3 HOH C 23 423 118 HOH HOH . M 3 HOH C 24 424 104 HOH HOH . N 3 HOH D 1 401 127 HOH HOH . N 3 HOH D 2 402 84 HOH HOH . N 3 HOH D 3 403 88 HOH HOH . N 3 HOH D 4 404 2 HOH HOH . N 3 HOH D 5 405 27 HOH HOH . N 3 HOH D 6 406 157 HOH HOH . N 3 HOH D 7 407 92 HOH HOH . N 3 HOH D 8 408 120 HOH HOH . N 3 HOH D 9 409 126 HOH HOH . O 3 HOH E 1 401 78 HOH HOH . O 3 HOH E 2 402 165 HOH HOH . O 3 HOH E 3 403 113 HOH HOH . O 3 HOH E 4 404 5 HOH HOH . O 3 HOH E 5 405 110 HOH HOH . O 3 HOH E 6 406 16 HOH HOH . O 3 HOH E 7 407 98 HOH HOH . O 3 HOH E 8 408 161 HOH HOH . O 3 HOH E 9 409 82 HOH HOH . O 3 HOH E 10 410 44 HOH HOH . O 3 HOH E 11 411 40 HOH HOH . O 3 HOH E 12 412 121 HOH HOH . O 3 HOH E 13 413 51 HOH HOH . O 3 HOH E 14 414 49 HOH HOH . O 3 HOH E 15 415 46 HOH HOH . O 3 HOH E 16 416 146 HOH HOH . O 3 HOH E 17 417 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -15.819 _atom_site.Cartn_y 3.852 _atom_site.Cartn_z 23.394 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.99 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 300 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #