data_6Z89 # _model_server_result.job_id jUGg9CtnPxNu688_XHHz-w _model_server_result.datetime_utc '2024-11-05 14:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6Z89 # _exptl.entry_id 6Z89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Z89 _cell.length_a 121.786 _cell.length_b 121.786 _cell.length_c 357.15 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 59.525 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 115 B CYS 141 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc2 B SG CYS 186 B CYS 212 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 C SG CYS 115 C CYS 141 1_555 I ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 C ND1 HIS 118 C HIS 144 1_555 I ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 C SG CYS 186 C CYS 212 1_555 I ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 E SG CYS 115 E CYS 141 1_555 K ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 E ND1 HIS 118 E HIS 144 1_555 K ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc8 E SG CYS 186 E CYS 212 1_555 K ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Z89 _atom_sites.fract_transf_matrix[1][1] 0.008211 _atom_sites.fract_transf_matrix[1][2] 0.004741 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 QBK A 1 301 301 QBK LIG . G 3 ZN A 1 302 1 ZN ZN . H 3 ZN B 1 301 251 ZN ZN . I 3 ZN C 1 301 251 ZN ZN . J 3 ZN D 1 301 251 ZN ZN . K 3 ZN E 1 301 251 ZN ZN . L 2 QBK E 1 302 301 QBK LIG . M 4 HOH A 1 401 3 HOH HOH . M 4 HOH A 2 402 12 HOH HOH . M 4 HOH A 3 403 1 HOH HOH . M 4 HOH A 4 404 67 HOH HOH . M 4 HOH A 5 405 18 HOH HOH . M 4 HOH A 6 406 36 HOH HOH . M 4 HOH A 7 407 57 HOH HOH . M 4 HOH A 8 408 74 HOH HOH . M 4 HOH A 9 409 30 HOH HOH . M 4 HOH A 10 410 51 HOH HOH . M 4 HOH A 11 411 79 HOH HOH . M 4 HOH A 12 412 140 HOH HOH . M 4 HOH A 13 413 82 HOH HOH . M 4 HOH A 14 414 49 HOH HOH . M 4 HOH A 15 415 24 HOH HOH . M 4 HOH A 16 416 53 HOH HOH . M 4 HOH A 17 417 88 HOH HOH . M 4 HOH A 18 418 111 HOH HOH . M 4 HOH A 19 419 22 HOH HOH . M 4 HOH A 20 420 50 HOH HOH . M 4 HOH A 21 421 5 HOH HOH . M 4 HOH A 22 422 63 HOH HOH . M 4 HOH A 23 423 71 HOH HOH . M 4 HOH A 24 424 130 HOH HOH . M 4 HOH A 25 425 117 HOH HOH . M 4 HOH A 26 426 6 HOH HOH . M 4 HOH A 27 427 77 HOH HOH . M 4 HOH A 28 428 70 HOH HOH . M 4 HOH A 29 429 189 HOH HOH . M 4 HOH A 30 430 106 HOH HOH . M 4 HOH A 31 431 207 HOH HOH . M 4 HOH A 32 432 102 HOH HOH . M 4 HOH A 33 433 192 HOH HOH . M 4 HOH A 34 434 215 HOH HOH . M 4 HOH A 35 435 198 HOH HOH . M 4 HOH A 36 436 121 HOH HOH . N 4 HOH B 1 401 7 HOH HOH . N 4 HOH B 2 402 4 HOH HOH . N 4 HOH B 3 403 60 HOH HOH . N 4 HOH B 4 404 38 HOH HOH . N 4 HOH B 5 405 80 HOH HOH . N 4 HOH B 6 406 11 HOH HOH . N 4 HOH B 7 407 43 HOH HOH . N 4 HOH B 8 408 27 HOH HOH . N 4 HOH B 9 409 62 HOH HOH . N 4 HOH B 10 410 41 HOH HOH . N 4 HOH B 11 411 138 HOH HOH . N 4 HOH B 12 412 65 HOH HOH . N 4 HOH B 13 413 9 HOH HOH . N 4 HOH B 14 414 68 HOH HOH . N 4 HOH B 15 415 86 HOH HOH . N 4 HOH B 16 416 14 HOH HOH . N 4 HOH B 17 417 76 HOH HOH . N 4 HOH B 18 418 8 HOH HOH . N 4 HOH B 19 419 143 HOH HOH . N 4 HOH B 20 420 25 HOH HOH . N 4 HOH B 21 421 99 HOH HOH . N 4 HOH B 22 422 81 HOH HOH . N 4 HOH B 23 423 146 HOH HOH . O 4 HOH C 1 401 32 HOH HOH . O 4 HOH C 2 402 34 HOH HOH . O 4 HOH C 3 403 33 HOH HOH . O 4 HOH C 4 404 52 HOH HOH . O 4 HOH C 5 405 6 HOH HOH . O 4 HOH C 6 406 48 HOH HOH . P 4 HOH D 1 401 8 HOH HOH . P 4 HOH D 2 402 31 HOH HOH . P 4 HOH D 3 403 26 HOH HOH . P 4 HOH D 4 404 15 HOH HOH . P 4 HOH D 5 405 28 HOH HOH . P 4 HOH D 6 406 19 HOH HOH . P 4 HOH D 7 407 59 HOH HOH . P 4 HOH D 8 408 87 HOH HOH . P 4 HOH D 9 409 124 HOH HOH . P 4 HOH D 10 410 35 HOH HOH . P 4 HOH D 11 411 84 HOH HOH . P 4 HOH D 12 412 119 HOH HOH . P 4 HOH D 13 413 150 HOH HOH . P 4 HOH D 14 414 116 HOH HOH . P 4 HOH D 15 415 112 HOH HOH . Q 4 HOH E 1 401 9 HOH HOH . Q 4 HOH E 2 402 187 HOH HOH . Q 4 HOH E 3 403 13 HOH HOH . Q 4 HOH E 4 404 44 HOH HOH . Q 4 HOH E 5 405 2 HOH HOH . Q 4 HOH E 6 406 45 HOH HOH . Q 4 HOH E 7 407 129 HOH HOH . Q 4 HOH E 8 408 7 HOH HOH . Q 4 HOH E 9 409 205 HOH HOH . Q 4 HOH E 10 410 110 HOH HOH . Q 4 HOH E 11 411 101 HOH HOH . Q 4 HOH E 12 412 29 HOH HOH . Q 4 HOH E 13 413 204 HOH HOH . Q 4 HOH E 14 414 104 HOH HOH . Q 4 HOH E 15 415 10 HOH HOH . Q 4 HOH E 16 416 141 HOH HOH . Q 4 HOH E 17 417 166 HOH HOH . Q 4 HOH E 18 418 213 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -38.151 _atom_site.Cartn_y 35.119 _atom_site.Cartn_z 2.227 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 162.48 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #