data_6Z8A # _model_server_result.job_id LhpIl_GvbDpVF_RgjwaW9A _model_server_result.datetime_utc '2025-02-17 06:33:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6z8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 6Z8A # _exptl.entry_id 6Z8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 598.689 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8E)-6,17,28-trihydroxy-1,6,12,17,23,28-hexaazacyclotritriacont-8-ene-2,5,13,16,24,27-hexone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6Z8A _cell.length_a 95.222 _cell.length_b 95.222 _cell.length_c 178.651 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 754 A CYS 798 1_555 A SG CYS 760 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc1 E NBO 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc2 E OAH 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 E OAE 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 E NBN 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 E OAG 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc6 E OAD 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 E NBP 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 E OAF 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc9 E OAI 6L0 . A 6L0 904 1_555 F FE FE . A FE 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C27 H46 N6 O9' _chem_comp.formula_weight 598.689 _chem_comp.id 6L0 _chem_comp.mon_nstd_flag . _chem_comp.name (8E)-6,17,28-trihydroxy-1,6,12,17,23,28-hexaazacyclotritriacont-8-ene-2,5,13,16,24,27-hexone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBB CAP 6L0 sing 1 n n CBB NBN 6L0 sing 2 n n CAP CAJ 6L0 doub 3 e n OAG NBN 6L0 sing 4 n n CAN CAT 6L0 sing 5 n n CAN CAK 6L0 sing 6 n n NBN CBK 6L0 sing 7 n n CAJ CAM 6L0 sing 8 n n CAT NBF 6L0 sing 9 n n CAM CAS 6L0 sing 10 n n CBK CAY 6L0 sing 11 n n CBK OAD 6L0 doub 12 n n OAI NBP 6L0 sing 13 n n CAK CAQ 6L0 sing 14 n n OAH NBO 6L0 sing 15 n n CAQ CBD 6L0 sing 16 n n CAY CAV 6L0 sing 17 n n CBD NBP 6L0 sing 18 n n NBF CBI 6L0 sing 19 n n CAS NBE 6L0 sing 20 n n CBC NBO 6L0 sing 21 n n CBC CAR 6L0 sing 22 n n NBO CBL 6L0 sing 23 n n NBP CBM 6L0 sing 24 n n CAV CBI 6L0 sing 25 n n OAA CBH 6L0 doub 26 n n OAE CBL 6L0 doub 27 n n CAR CAL 6L0 sing 28 n n CBI OAB 6L0 doub 29 n n CBL CAZ 6L0 sing 30 n n NBE CBH 6L0 sing 31 n n CBM OAF 6L0 doub 32 n n CBM CBA 6L0 sing 33 n n CBH CAW 6L0 sing 34 n n CAZ CAW 6L0 sing 35 n n CAL CAO 6L0 sing 36 n n CBA CAX 6L0 sing 37 n n CAO CAU 6L0 sing 38 n n CAX CBJ 6L0 sing 39 n n OAC CBJ 6L0 doub 40 n n CBJ NBG 6L0 sing 41 n n CAU NBG 6L0 sing 42 n n CBA H1 6L0 sing 43 n n CBA H2 6L0 sing 44 n n CAX H3 6L0 sing 45 n n CAX H4 6L0 sing 46 n n NBG H5 6L0 sing 47 n n CAU H6 6L0 sing 48 n n CAU H7 6L0 sing 49 n n CAO H8 6L0 sing 50 n n CAO H9 6L0 sing 51 n n CAL H10 6L0 sing 52 n n CAL H11 6L0 sing 53 n n CAR H12 6L0 sing 54 n n CAR H13 6L0 sing 55 n n CBC H14 6L0 sing 56 n n CBC H15 6L0 sing 57 n n OAH H16 6L0 sing 58 n n CAZ H17 6L0 sing 59 n n CAZ H18 6L0 sing 60 n n CAW H19 6L0 sing 61 n n CAW H20 6L0 sing 62 n n NBE H21 6L0 sing 63 n n CAS H22 6L0 sing 64 n n CAS H23 6L0 sing 65 n n CAM H24 6L0 sing 66 n n CAM H25 6L0 sing 67 n n CAJ H26 6L0 sing 68 n n CAP H27 6L0 sing 69 n n CBB H28 6L0 sing 70 n n CBB H29 6L0 sing 71 n n OAG H30 6L0 sing 72 n n CAY H31 6L0 sing 73 n n CAY H32 6L0 sing 74 n n CAV H33 6L0 sing 75 n n CAV H34 6L0 sing 76 n n NBF H35 6L0 sing 77 n n CAT H36 6L0 sing 78 n n CAT H37 6L0 sing 79 n n CAN H38 6L0 sing 80 n n CAN H39 6L0 sing 81 n n CAK H40 6L0 sing 82 n n CAK H41 6L0 sing 83 n n CAQ H42 6L0 sing 84 n n CAQ H43 6L0 sing 85 n n CBD H44 6L0 sing 86 n n CBD H45 6L0 sing 87 n n OAI H46 6L0 sing 88 n n # _atom_sites.entry_id 6Z8A _atom_sites.fract_transf_matrix[1][1] 0.010502 _atom_sites.fract_transf_matrix[1][2] 0.006063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 2 SO4 A 1 902 1001 SO4 SO4 . D 3 DMS A 1 903 1301 DMS DMS . E 4 6L0 A 1 904 1 6L0 6L0 . F 5 FE A 1 905 2 FE FE . G 2 SO4 A 1 906 1 SO4 SO4 . H 6 HOH A 1 1001 8 HOH HOH . H 6 HOH A 2 1002 7 HOH HOH . H 6 HOH A 3 1003 1 HOH HOH . H 6 HOH A 4 1004 6 HOH HOH . H 6 HOH A 5 1005 3 HOH HOH . H 6 HOH A 6 1006 2 HOH HOH . H 6 HOH A 7 1007 4 HOH HOH . H 6 HOH A 8 1008 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBA 6L0 . . . E 4 -33.22 9.598 -32.04 1 68.42 ? CBA 6L0 904 A 1 HETATM 2 C CAX 6L0 . . . E 4 -32.918 10.982 -32.482 1 69.54 ? CAX 6L0 904 A 1 HETATM 3 C CBJ 6L0 . . . E 4 -33.937 11.971 -31.998 1 73.06 ? CBJ 6L0 904 A 1 HETATM 4 O OAC 6L0 . . . E 4 -33.752 13.18 -32.062 1 73.74 ? OAC 6L0 904 A 1 HETATM 5 N NBG 6L0 . . . E 4 -35.057 11.478 -31.481 1 72.32 ? NBG 6L0 904 A 1 HETATM 6 C CAU 6L0 . . . E 4 -36.07 12.326 -30.873 1 69.32 ? CAU 6L0 904 A 1 HETATM 7 C CAO 6L0 . . . E 4 -35.478 13.396 -29.978 1 66.01 ? CAO 6L0 904 A 1 HETATM 8 C CAL 6L0 . . . E 4 -35.817 13.217 -28.521 1 60.81 ? CAL 6L0 904 A 1 HETATM 9 C CAR 6L0 . . . E 4 -34.784 12.474 -27.731 1 60.48 ? CAR 6L0 904 A 1 HETATM 10 C CBC 6L0 . . . E 4 -35.331 11.391 -26.829 1 63.73 ? CBC 6L0 904 A 1 HETATM 11 N NBO 6L0 . . . E 4 -34.59 10.145 -26.97 1 63.21 ? NBO 6L0 904 A 1 HETATM 12 O OAH 6L0 . . . E 4 -35.017 9.409 -28.016 1 65.56 ? OAH 6L0 904 A 1 HETATM 13 C CBL 6L0 . . . E 4 -33.616 9.751 -26.169 1 59.45 ? CBL 6L0 904 A 1 HETATM 14 O OAE 6L0 . . . E 4 -32.875 8.84 -26.442 1 55.38 ? OAE 6L0 904 A 1 HETATM 15 C CAZ 6L0 . . . E 4 -33.432 10.521 -24.897 1 64.36 ? CAZ 6L0 904 A 1 HETATM 16 C CAW 6L0 . . . E 4 -34.574 10.378 -23.946 1 61.3 ? CAW 6L0 904 A 1 HETATM 17 O OAA 6L0 . . . E 4 -34.23 8.043 -23.757 1 59.27 ? OAA 6L0 904 A 1 HETATM 18 C CBH 6L0 . . . E 4 -35.027 8.96 -23.847 1 57.41 ? CBH 6L0 904 A 1 HETATM 19 N NBE 6L0 . . . E 4 -36.337 8.741 -23.89 1 56.26 ? NBE 6L0 904 A 1 HETATM 20 C CAS 6L0 . . . E 4 -36.899 7.406 -23.983 1 57.9 ? CAS 6L0 904 A 1 HETATM 21 C CAM 6L0 . . . E 4 -37.47 7.119 -25.354 1 60.17 ? CAM 6L0 904 A 1 HETATM 22 C CAJ 6L0 . . . E 4 -36.813 5.976 -26.067 1 61.94 ? CAJ 6L0 904 A 1 HETATM 23 C CAP 6L0 . . . E 4 -36.678 5.864 -27.368 1 58.62 ? CAP 6L0 904 A 1 HETATM 24 C CBB 6L0 . . . E 4 -36.087 6.898 -28.264 1 56.96 ? CBB 6L0 904 A 1 HETATM 25 N NBN 6L0 . . . E 4 -34.736 6.626 -28.713 1 55.22 ? NBN 6L0 904 A 1 HETATM 26 O OAG 6L0 . . . E 4 -34.537 7.244 -29.889 1 65.4 ? OAG 6L0 904 A 1 HETATM 27 C CBK 6L0 . . . E 4 -33.778 5.912 -28.119 1 52.33 ? CBK 6L0 904 A 1 HETATM 28 O OAD 6L0 . . . E 4 -32.627 6.264 -28.035 1 51.32 ? OAD 6L0 904 A 1 HETATM 29 C CAY 6L0 . . . E 4 -34.154 4.575 -27.575 1 54.42 ? CAY 6L0 904 A 1 HETATM 30 C CAV 6L0 . . . E 4 -32.948 3.733 -27.377 1 59.71 ? CAV 6L0 904 A 1 HETATM 31 C CBI 6L0 . . . E 4 -32.08 3.685 -28.601 1 62.55 ? CBI 6L0 904 A 1 HETATM 32 O OAB 6L0 . . . E 4 -32.403 3.069 -29.605 1 58.51 ? OAB 6L0 904 A 1 HETATM 33 N NBF 6L0 . . . E 4 -30.938 4.356 -28.552 1 66.12 ? NBF 6L0 904 A 1 HETATM 34 C CAT 6L0 . . . E 4 -30.117 4.589 -29.724 1 69.49 ? CAT 6L0 904 A 1 HETATM 35 C CAN 6L0 . . . E 4 -30.939 4.897 -30.956 1 65.91 ? CAN 6L0 904 A 1 HETATM 36 C CAK 6L0 . . . E 4 -30.419 6.135 -31.634 1 66.37 ? CAK 6L0 904 A 1 HETATM 37 C CAQ 6L0 . . . E 4 -31.392 7.272 -31.79 1 67.4 ? CAQ 6L0 904 A 1 HETATM 38 C CBD 6L0 . . . E 4 -30.925 8.545 -31.115 1 64.75 ? CBD 6L0 904 A 1 HETATM 39 N NBP 6L0 . . . E 4 -31.903 9.057 -30.167 1 63.9 ? NBP 6L0 904 A 1 HETATM 40 C CBM 6L0 . . . E 4 -33.11 9.442 -30.556 1 67.12 ? CBM 6L0 904 A 1 HETATM 41 O OAF 6L0 . . . E 4 -34.057 9.689 -29.843 1 68.57 ? OAF 6L0 904 A 1 HETATM 42 O OAI 6L0 . . . E 4 -31.392 9.198 -28.93 1 56.4 ? OAI 6L0 904 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 42 #